A Thoracic Factor Stimulates Replication of Microplitis Demolitor
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Diversity of Large DNA Viruses of Invertebrates ⇑ Trevor Williams A, Max Bergoin B, Monique M
Journal of Invertebrate Pathology 147 (2017) 4–22 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/jip Diversity of large DNA viruses of invertebrates ⇑ Trevor Williams a, Max Bergoin b, Monique M. van Oers c, a Instituto de Ecología AC, Xalapa, Veracruz 91070, Mexico b Laboratoire de Pathologie Comparée, Faculté des Sciences, Université Montpellier, Place Eugène Bataillon, 34095 Montpellier, France c Laboratory of Virology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands article info abstract Article history: In this review we provide an overview of the diversity of large DNA viruses known to be pathogenic for Received 22 June 2016 invertebrates. We present their taxonomical classification and describe the evolutionary relationships Revised 3 August 2016 among various groups of invertebrate-infecting viruses. We also indicate the relationships of the Accepted 4 August 2016 invertebrate viruses to viruses infecting mammals or other vertebrates. The shared characteristics of Available online 31 August 2016 the viruses within the various families are described, including the structure of the virus particle, genome properties, and gene expression strategies. Finally, we explain the transmission and mode of infection of Keywords: the most important viruses in these families and indicate, which orders of invertebrates are susceptible to Entomopoxvirus these pathogens. Iridovirus Ó Ascovirus 2016 Elsevier Inc. All rights reserved. Nudivirus Hytrosavirus Filamentous viruses of hymenopterans Mollusk-infecting herpesviruses 1. Introduction in the cytoplasm. This group comprises viruses in the families Poxviridae (subfamily Entomopoxvirinae) and Iridoviridae. The Invertebrate DNA viruses span several virus families, some of viruses in the family Ascoviridae are also discussed as part of which also include members that infect vertebrates, whereas other this group as their replication starts in the nucleus, which families are restricted to invertebrates. -
Virus World As an Evolutionary Network of Viruses and Capsidless Selfish Elements
Virus World as an Evolutionary Network of Viruses and Capsidless Selfish Elements Koonin, E. V., & Dolja, V. V. (2014). Virus World as an Evolutionary Network of Viruses and Capsidless Selfish Elements. Microbiology and Molecular Biology Reviews, 78(2), 278-303. doi:10.1128/MMBR.00049-13 10.1128/MMBR.00049-13 American Society for Microbiology Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Virus World as an Evolutionary Network of Viruses and Capsidless Selfish Elements Eugene V. Koonin,a Valerian V. Doljab National Center for Biotechnology Information, National Library of Medicine, Bethesda, Maryland, USAa; Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, USAb Downloaded from SUMMARY ..................................................................................................................................................278 INTRODUCTION ............................................................................................................................................278 PREVALENCE OF REPLICATION SYSTEM COMPONENTS COMPARED TO CAPSID PROTEINS AMONG VIRUS HALLMARK GENES.......................279 CLASSIFICATION OF VIRUSES BY REPLICATION-EXPRESSION STRATEGY: TYPICAL VIRUSES AND CAPSIDLESS FORMS ................................279 EVOLUTIONARY RELATIONSHIPS BETWEEN VIRUSES AND CAPSIDLESS VIRUS-LIKE GENETIC ELEMENTS ..............................................280 Capsidless Derivatives of Positive-Strand RNA Viruses....................................................................................................280 -
ICTV Code Assigned: 2011.001Ag Officers)
This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2011.001aG officers) Short title: Change existing virus species names to non-Latinized binomials (e.g. 6 new species in the genus Zetavirus) Modules attached 1 2 3 4 5 (modules 1 and 9 are required) 6 7 8 9 Author(s) with e-mail address(es) of the proposer: Van Regenmortel Marc, [email protected] Burke Donald, [email protected] Calisher Charles, [email protected] Dietzgen Ralf, [email protected] Fauquet Claude, [email protected] Ghabrial Said, [email protected] Jahrling Peter, [email protected] Johnson Karl, [email protected] Holbrook Michael, [email protected] Horzinek Marian, [email protected] Keil Guenther, [email protected] Kuhn Jens, [email protected] Mahy Brian, [email protected] Martelli Giovanni, [email protected] Pringle Craig, [email protected] Rybicki Ed, [email protected] Skern Tim, [email protected] Tesh Robert, [email protected] Wahl-Jensen Victoria, [email protected] Walker Peter, [email protected] Weaver Scott, [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . -
Evidence to Support Safe Return to Clinical Practice by Oral Health Professionals in Canada During the COVID-19 Pandemic: a Repo
Evidence to support safe return to clinical practice by oral health professionals in Canada during the COVID-19 pandemic: A report prepared for the Office of the Chief Dental Officer of Canada. November 2020 update This evidence synthesis was prepared for the Office of the Chief Dental Officer, based on a comprehensive review under contract by the following: Paul Allison, Faculty of Dentistry, McGill University Raphael Freitas de Souza, Faculty of Dentistry, McGill University Lilian Aboud, Faculty of Dentistry, McGill University Martin Morris, Library, McGill University November 30th, 2020 1 Contents Page Introduction 3 Project goal and specific objectives 3 Methods used to identify and include relevant literature 4 Report structure 5 Summary of update report 5 Report results a) Which patients are at greater risk of the consequences of COVID-19 and so 7 consideration should be given to delaying elective in-person oral health care? b) What are the signs and symptoms of COVID-19 that oral health professionals 9 should screen for prior to providing in-person health care? c) What evidence exists to support patient scheduling, waiting and other non- treatment management measures for in-person oral health care? 10 d) What evidence exists to support the use of various forms of personal protective equipment (PPE) while providing in-person oral health care? 13 e) What evidence exists to support the decontamination and re-use of PPE? 15 f) What evidence exists concerning the provision of aerosol-generating 16 procedures (AGP) as part of in-person -
Evolutionary Analysis of Viral Sequences in Eukaryotic Genomes
Evolutionary analysis of viral sequences in eukaryotic genomes Sean Schneider A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2014 Reading Committee: James H. Thomas, Chair Willie Swanson Phil Green Program Authorized to Offer Degree: Genome Sciences ©Copyright 2014 Sean Schneider University of Washington Abstract Evolutionary analysis of viral sequences in eukaryotic genomes Sean Schneider Chair of the supervisory committee: Professor James H. Thomas Genome Sciences The focus of this work is several evolutionary analyses of endogenous viral sequences in eukaryotic genomes. Endogenous viral sequences can provide key insights into the past forms and evolutionary history of viruses, as well as the responses of host organisms they infect. In this work I have examined viral sequences in a diverse assortment of eukaryotic hosts in order to study coevolution between hosts and the organisms that infect them. This research consisted of two major lines of investigation. In the first portion of this work, I outline the hypothesis that the C2H2 zinc finger gene family in vertebrates has evolved by birth-death evolution in response to sporadic retroviral infection. The hypothesis suggests an evolutionary model in which newly duplicated zinc finger genes are retained by selection in response to retroviral infection. This hypothesis is supported by a strong association (R2=0.67) between the number of endogenous retroviruses and the number of zinc fingers in diverse vertebrate genomes. Based on this and other evidence, the zinc finger gene family appears to act as a “genomic immune system” against retroviral infections. The other major line of investigation in this work examines endogenous virus sequences utilized by parasitic wasps to disable hosts that they infect. -
A Polydnaviral Genome of Microplitis Bicoloratus Bracovirus and Molecular Interactions Between the Host and Virus Involved in NF-Jb Signaling
Arch Virol (2016) 161:3095–3124 DOI 10.1007/s00705-016-2988-3 ORIGINAL ARTICLE A polydnaviral genome of Microplitis bicoloratus bracovirus and molecular interactions between the host and virus involved in NF-jB signaling 1 1 1 2 1 Dong-Shuai Yu • Ya-Bin Chen • Ming Li • Ming-Jun Yang • Yang Yang • 1 1 Jian-Sheng Hu • Kai-Jun Luo Received: 15 February 2016 / Accepted: 15 July 2016 / Published online: 13 August 2016 Ó Springer-Verlag Wien 2016 Abstract Polydnaviruses (PDVs) play a critical role in and viral NF-jB/IjB genes were persistent and also varied altering host gene expression to induce immunosuppres- in Spli221 cells undergoing virus-induced pre-apoptosis sion. However, it remains largely unclear how PDV genes cell from 1 to 5 hours postinfection. Both were then affect host genes. Here, the complete genome sequence of expressed in a time-dependent expression in virus-induced Microplitis bicoloratus bracovirus (MbBV), which is apoptotic cells. These data show that viral IjB-like tran- known to be an apoptosis inducer, was determined. The scription does not inhibit host NF-jB/IjB expression, MbBV genome consisted of 17 putative double-stranded suggesting that transcription of these genes might be reg- DNA circles and 179 fragments with a total size of 336,336 ulated by different mechanisms. bp and contained 116 open reading frames (ORFs). Based on conserved domains, nine gene families were identified, of which the IjB-like viral ankyrin (vank) family included Abbreviations 28 members and was one of the largest families. Among MbBV Microplitis bicoloratus bracovirus the 116 ORFs, 13 MbBV genes were expressed in hemo- MdBV Microplitis demolitor bracovirus cytes undergoing MbBV-induced apoptosis and further CcBV Cotesia congregata bracovirus analyzed. -
DNA Viruses: the Really Big Ones (Giruses)
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Plant Pathology Plant Pathology Department 5-2010 DNA Viruses: The Really Big Ones (Giruses) James L. Van Etten University of Nebraska-Lincoln, [email protected] Leslie C. Lane University of Nebraska-Lincoln, [email protected] David Dunigan University of Nebraska-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/plantpathpapers Part of the Plant Pathology Commons Van Etten, James L.; Lane, Leslie C.; and Dunigan, David, "DNA Viruses: The Really Big Ones (Giruses)" (2010). Papers in Plant Pathology. 203. https://digitalcommons.unl.edu/plantpathpapers/203 This Article is brought to you for free and open access by the Plant Pathology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Plant Pathology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Annual Review of Microbiology 64 (2010), pp. 83–99; doi: 10.1146/annurev.micro.112408.134338 Copyright © 2010 by Annual Reviews. Used by permission. http://micro.annualreviews.org Published online May 12, 2010. DNA Viruses: The Really Big Ones (Giruses) James L. Van Etten,1,2 Leslie C. Lane,1 and David D. Dunigan 1,2 1. Department of Plant Pathology, University of Nebraska–Lincoln, Lincoln, Nebraska 68583 2. Nebraska Center for Virology, University of Nebraska–Lincoln, Lincoln, Nebraska 68583 Corresponding author — J. L. Van Etten, email [email protected] Abstract Viruses with genomes greater than 300 kb and up to 1200 kb are being discovered with increas- ing frequency. These large viruses (often called giruses) can encode up to 900 proteins and also many tRNAs. -
Generating Genomic Resources for Two Crustacean Species and Their Application to the Study of White Spot Disease
Generating genomic resources for two crustacean species and their application to the study of White Spot Disease Submitted by Bas Verbruggen To the University of Exeter as a thesis for the degree of Doctor of Philosophy in Biological Sciences, September 2016 This thesis is available for Library use on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement I certify that all material in this thesis which is not my own work has been identified and that no material has previously been submitted and approved for the award of a degree by this or any other University. Signature: ……………………………………(Bas Verbruggen) Abstract Over the last decades the crustacean aquaculture sector has been steadily growing, in order to meet global demands for its products. A major hurdle for further growth of the industry is the prevalence of viral disease epidemics that are facilitated by the intense culture conditions. A devastating virus impacting on the sector is the White Spot Syndrome Virus (WSSV), responsible for over US $ 10 billion in losses in shrimp production and trade. The Pathogenicity of WSSV is high, reaching 100 % mortality within 3-10 days in penaeid shrimps. In contrast, the European shore crab Carcinus maenas has been shown to be relatively resistant to WSSV. Uncovering the basis of this resistance could help inform on the development of strategies to mitigate the WSSV threat. C. maenas has been used widely in studies on ecotoxicology and host-pathogen interactions. However, like most aquatic crustaceans, the genomic resources available for this species are limited, impairing experimentation. -
A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus
G3: Genes|Genomes|Genetics Early Online, published on October 17, 2017 as doi:10.1534/g3.117.300280 1 A horizontally transferred autonomous Helitron became a full polydnavirus 2 segment in Cotesia vestalis 3 4 5 Pedro Heringer1, Guilherme B. Dias1, Gustavo C. S. Kuhn1 6 7 8 9 1 Departamento de Biologia Geral, Universidade Federal de Minas Gerais, CEP: 31270-901, Belo 10 Horizonte, MG, Brazil 11 12 13 14 15 16 17 18 19 20 21 22 1 © The Author(s) 2013. Published by the Genetics Society of America. 23 Running Title: Helitron as a bracovirus segment 24 Keywords: Bracovirus, transposable element, Helitron, horizontal transfer, Cotesia 25 Corresponding author: Gustavo Campos e Silva Kuhn 26 E-mail: [email protected] 27 Laboratório de Citogenômica Evolutiva (L3 159), Departamento de Biologia Geral. 28 Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais. 29 Av. Antônio Carlos 6627, CEP: 31270-901, Belo Horizonte, MG, Brazil. 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 2 46 ABSTRACT 47 Bracoviruses associate symbiotically with thousands of parasitoid wasp species in the family Braconidae, 48 working as virulence gene vectors, and allowing the development of wasp larvae within hosts. These 49 viruses are composed by multiple DNA circles that are packaged into infective particles and injected 50 together with wasp's eggs during parasitization. One of the viral segments of Cotesia vestalis bracovirus 51 contains a gene that has been previously described as a helicase of unknown origin. Here we 52 demonstrate that this gene is a Rep/Helicase from an intact Helitron transposable element that covers 53 the viral segment almost entirely. -
Endogenization from Diverse Viral Ancestors Is Common and Widespread in Parasitoid Wasps
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.17.148684; this version posted June 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Endogenization from diverse viral ancestors is common and widespread in parasitoid wasps 2 Gaelen R. Burke 1*, Heather M. Hines 2, Barbara J. Sharanowski3 3 4 Affiliations: 5 1Department of Entomology, University of Georgia, Athens, GA 30606, USA 6 2Department of Biology and Department of Entomology, Pennsylvania State University, University Park, 7 PA 16802 USA 8 3Department of Biology, University of Central Florida, Orlando, FL 32816, USA 9 *Author for Correspondence: Gaelen R. Burke, Department of Entomology, University of Georgia, 10 Athens, GA, USA, [email protected] 11 12 Abstract 13 The Ichneumonoidea (Ichneumonidae and Braconidae) is an incredibly diverse superfamily of parasitoid 14 wasps that includes species that produce virus-like entities in their reproductive tracts to promote 15 successful parasitism of host insects. Research on these entities has traditionally focused upon two viral 16 genera Bracovirus (in Braconidae) and Ichnovirus (in Ichneumonidae). These viruses are produced using 17 genes known collectively as endogenous viral elements (EVEs) that represent historical, now heritable 18 viral integration events in wasp genomes. Here, new genome sequence assemblies for eleven species and 19 six publicly available genomes from the Ichneumonoidea were screened with the goal of identifying novel 20 EVEs and characterizing the breadth of species in lineages with known EVEs. Exhaustive similarity 21 searches combined with the identification of ancient core genes revealed sequences from both known and 22 novel EVEs. -
WO 2015/013681 Al 29 January 2015 (29.01.2015) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2015/013681 Al 29 January 2015 (29.01.2015) P O P C T (51) International Patent Classification: AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, C12Q 1/68 (2006.01) BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (21) International Application Number: HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, PCT/US20 14/048301 KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, (22) International Filing Date: MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, 25 July 2014 (25.07.2014) OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, (25) Filing Language: English TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, (26) Publication Language: English ZW. (30) Priority Data: (84) Designated States (unless otherwise indicated, for every 61/858,3 11 25 July 2013 (25.07.2013) US kind of regional protection available): ARIPO (BW, GH, 61/899,027 1 November 2013 (01. 11.2013) US GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, (71) Applicant: BIO-RAD LABORATORIES, INC. TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, [US/US]; 1000 Alfred Nobel Drive, Hercules, CA 94547 EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, (US). -
Baculovirus Molecular Biology
1 2 Baculovirus Molecular Biology Fourth Edition George F. Rohrmann Department of Microbiology Oregon State University Corvallis, OR 97331-3804 [email protected] https://www.ncbi.nlm.nih.gov/books/NBK543458/ Copyright G. F. Rohrmann 2019 Citation: Rohrmann GF. Baculovirus Molecular Biology [Internet]. 4th edition. Bethesda (MD): National Center for Biotechnology Information (US); 2019. 3 4 Table of Contents Preface 7 Chapters 1. Introduction to the baculoviruses, their taxonomy, and evolution 11 2. Structural proteins of baculovirus occlusion bodies and virions 25 3. The baculovirus replication cycle: Effects on cells and insects 53 4. Early events in infection: Virus transcription 73 5. DNA replication and genome processing 83 6. Baculovirus late transcription 105 7. Baculovirus infection: The cell cycle and apoptosis 117 8. Host resistance, susceptibility and the effect of viral infection on host molecular biology 125 9. Baculoviruses as insecticides; three examples 133 10. Baculovirus expression technology: Theory and application 139 11. Baculoviruses, retroviruses, DNA transposons (piggyBac), and insect cells 151 12. The AcMNPV genome: gene content, conservation, and function 165 13. Selected baculovirus genes without orthologs in the AcMNPV genome: Conservation and function 221 14. Glossary 227 5 6 Preface from fourth edition George Rohrmann, PhD August 1, 2019 This is the 4th edition of a book that was initiated with the annotation of the function of all the genes in the most commonly studied baculovirus, AcMNPV. It has been almost six years since I reviewed this literature. As a measure of the research that has occurred over this time, Chapter 12 which reviews all the presumptive genes in the AcMNPV genome went from 481 references to 582, a 21% increase.