<I>Melanohalea Subexasperata</I>
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Cryptic Species and Species Pairs in Lichens: a Discussion on the Relationship Between Molecular Phylogenies and Morphological Characters
cryptic species:07-Cryptic_species 10/12/2009 13:19 Página 71 Anales del Jardín Botánico de Madrid Vol. 66S1: 71-81, 2009 ISSN: 0211-1322 doi: 10.3989/ajbm.2225 Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters by Ana Crespo & Sergio Pérez-Ortega Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, E-28040 Madrid, Spain [email protected], [email protected] Abstract Resumen Crespo, A. & Pérez-Ortega, S. 2009. Cryptic species and species Crespo, A. & Pérez-Ortega, S. 2009. Especies crípticas y pares de pairs in lichens: A discussion on the relationship between mole- especies en líquenes: una discusión sobre la relación entre la fi- cular phylogenies and morphological characters. Anales Jard. logenia molecular y los caracteres morfológicos. Anales Jard. Bot. Madrid 66S1: 71-81. Bot. Madrid 66S1: 71-81 (en inglés). As with most disciplines in biology, molecular genetics has re- Como en otras disciplinas, el impacto producido por la filogenia volutionized our understanding of lichenized fungi. Nowhere molecular en el conocimiento de los hongos liquenizados ha has this been more true than in systematics, especially in the de- producido avances y cambios conceptuales importantes. Esto limitation of species. In many cases, molecular research has ve- ha sido especialmente cierto en la sistemática y ha afectado de rified long-standing hypotheses, but in others, results appear to una manera muy notable en aspectos -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Cladoniaceae, Ascomycota)
Persoonia 37, 2016: 1–12 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X688081 Sharpening the species boundaries in the Cladonia mediterranea complex (Cladoniaceae, Ascomycota) R. Pino-Bodas1, I. Pérez-Vargas2, S. Stenroos1, T. Ahti1, A.R. Burgaz 3 Key words Abstract The complex Cladonia mediterranea belongs to the section Impexae and is formed by C. azorica, C. maca ronesica and C. mediterranea. These species are basically distributed in the Mediterranean and Macaronesian coalescence Regions. In the present work the limits between the species of this complex are re-examined. To this end, the mor- Iberian Peninsula phological characters were studied along with the secondary metabolites and the DNA sequences from three loci integrative taxonomy (ITS rDNA, IGS rDNA and rpb2). The morphological data were studied by principal component analysis (PCA), while lichen forming fungi the DNA sequences were analyzed using several approaches available to delimit species: genealogical concor dance Macaronesia phylogenetic species recognition, species tree (BEAST* and spedeSTEM) and cohesion species recognition. In molecular systematic addition, the genealogical sorting index was used in order to assess the monophyly of the species. The different species delimitation procedures used in our study turned out to be highly congruent with respect to the limits they establish, but these taxonomy limits are not the ones separating the prior species. Either the morphological analysis or the different approaches to species delimitation indicate that C. mediterranea is a different species from C. macaronesica, while C. azorica and C. macaronesica, which are reduced to synonyms of C. portentosa, constitute a separate lineage. -
<I> Lecanoromycetes</I> of Lichenicolous Fungi Associated With
Persoonia 39, 2017: 91–117 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.05 Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera R. Pino-Bodas1,2, M.P. Zhurbenko3, S. Stenroos1 Key words Abstract Though most of the lichenicolous fungi belong to the Ascomycetes, their phylogenetic placement based on molecular data is lacking for numerous species. In this study the phylogenetic placement of 19 species of cladoniicolous species lichenicolous fungi was determined using four loci (LSU rDNA, SSU rDNA, ITS rDNA and mtSSU). The phylogenetic Pilocarpaceae analyses revealed that the studied lichenicolous fungi are widespread across the phylogeny of Lecanoromycetes. Protothelenellaceae One species is placed in Acarosporales, Sarcogyne sphaerospora; five species in Dactylosporaceae, Dactylo Scutula cladoniicola spora ahtii, D. deminuta, D. glaucoides, D. parasitica and Dactylospora sp.; four species belong to Lecanorales, Stictidaceae Lichenosticta alcicorniaria, Epicladonia simplex, E. stenospora and Scutula epiblastematica. The genus Epicladonia Stictis cladoniae is polyphyletic and the type E. sandstedei belongs to Leotiomycetes. Phaeopyxis punctum and Bachmanniomyces uncialicola form a well supported clade in the Ostropomycetidae. Epigloea soleiformis is related to Arthrorhaphis and Anzina. Four species are placed in Ostropales, Corticifraga peltigerae, Cryptodiscus epicladonia, C. galaninae and C. cladoniicola -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Red List of Estonian Lichens: Revision in 2019
Folia Cryptog. Estonica, Fasc. 56: 63–76 (2019) https://doi.org/10.12697/fce.2019.56.07 Red List of Estonian lichens: revision in 2019 Piret Lõhmus1, Liis Marmor2, Inga Jüriado1, Ave Suija1,3, Ede Oja1, Polina Degtjarenko1,4, Tiina Randlane1 1University of Tartu, Institute of Ecology and Earth Sciences, Lai 40, 51005 Tartu, Estonia. E-mail: [email protected] 2E-mail: [email protected] 3University of Tartu, Natural History Museum, Vanemuise 46, 51014 Tartu, Estonia 4Swiss Federal Research Institute WSL, Biodiversity and Conservation Biology, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland Abstract: The second assessment of the threat status of Estonian lichens based on IUCN system was performed in 2019. The main basis for choosing the species to be currently assessed was the list of legally protected lichens and the list of species assigned to the Red List Categories RE–DD in 2008. Species that had been assessed as Least Concern (LC) in 2008 were not evaluated. Altogether, threat status of 229 lichen species was assessed, among them 181 were assigned to the threatened categories (CR, EN, VU), while no species were assigned to the LC category. Compared to the previous red list, category was deteriorated for 58% and remained the same for 32% of species. In Estonia, threatened lichens inhabit mainly forests (particularly dry boreal and nemoral deciduous stands), alvar grasslands, sand dunes and various saxicolous habitats. Therefore, the most frequent threat factors were forest cutting and overgrowing of alvars and dunes (main threat factor for 96 and 70 species, respectfully). Kokkuvõte: 2019. aastal viidi läbi teistkordne IUCN süsteemil põhinev Eesti samblike ohustatuse hindamine. -
Bulletin of the California Lichen Society
Bulletin of the California Lichen Society Volume 22 No. 1 Summer 2015 Bulletin of the California Lichen Society Volume 22 No. 1 Summer 2015 Contents Beomyces rufus discovered in southern California .....................................................................................1 Kerry Knudsen & Jana Kocourková Acarospora strigata, the blue Utah lichen (blutah) ....................................................................................4 Bruce McCune California dreaming: Perspectives of a northeastern lichenologist ............................................................6 R. Troy McMullin Lichen diversity in Muir Woods National Monument ..............................................................................13 Rikke Reese Næsborg & Cameron Williams Additional sites of Umbilicaria hirsuta from Southwestern Oregon, and the associated lichenicolous fungus Arthonia circinata new to North America .....................................................................................19 John Villella & Steve Sheehy A new lichen field guide for eastern North America: A book review.........................................................23 Kerry Knudsen On wood: A monograph of Xylographa: A book review............................................................................24 Kerry Knudsen News and Notes..........................................................................................................................................26 Upcoming Events........................................................................................................................................30 -
Melanelia Piliferella
Threatened Species Link www.tas.gov.au SPECIES MANAGEMENT PROFILE Melanelia piliferella melanelia piliferella Group: Ascomycota, Lecanoromycetes, Lecanorales, Parmeliaceae Status: Threatened Species Protection Act 1995: vulnerable Environment Protection and Biodiversity Conservation Act 1999: Not listed Endemic Found in Tasmania and elsewhere Status: A complete species management profile is not currently available for this species. Check for further information on this page and any relevant Activity Advice. Key Points Important: Is this species in your area? Do you need a permit? Ensure you’ve covered all the issues by checking the Planning Ahead page. Important: Different threatened species may have different requirements. For any activity you are considering, read the Activity Advice pages for background information and important advice about managing around the needs of multiple threatened species. Surveying Key Survey reliability more info To ensure you follow the law - check whether your survey requires a permit. Always M Best time to survey report any new records to the Natural Values Atlas, or send the information direct to M Potential time to survey the Threatened Species Section. Refer to the Activity Advice: Surveying page for background information. M Poor time to survey M Non-survey period Species Spring Summer Autumn Winter melanelia piliferella S S O O N N D D J J F F M M A A M M J J J J A A This foliose lichen can be identified at any time of the year although expert confirmation of the identity of suspected new populations may be required. In Tasmania, this species is known from one collection from dry sandstone bluffs in degraded dry sclerophyll forest near Kempton. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Lichens of Alaska
A Genus Key To The LICHENS OF ALASKA By Linda Hasselbach and Peter Neitlich January 1998 National Park Service Gates of the Arctic National Park and Preserve 201 First Avenue Fairbanks, AK 99701 ACKNOWLEDGMENTS We would like to acknowledge the following Individuals for their kind assistance: Jim Riley generously provided lichen photographs, with the exception of three copyrighted photos, Alectoria sarmentosa, Peltigera neopolydactyla and P. membranaceae, which are courtesy of Steve and Sylvia Sharnoff, and Neph roma arctica by Shelli Swanson. The line drawing on the cover, as well as those for Psoroma hypnarum and the 'lung-like' illustration, are the work of Alexander Mikulin as found In Lichens of Southeastern Alaska by Gelser, Dillman, Derr, and Stensvold. 'Cyphellae' and 'pseudocyphellae' are also by Alexander Mikulin as appear In Macrolichens of the Pacific Northwest by McCune and Gelser. The Cladonia apothecia drawing is the work of Bruce McCune from Macrolichens of the Northern Rocky Mountains by McCune and Goward. Drawings of Brodoa oroarcttca, Physcia aipolia apothecia, and Peltigera veins are the work of Trevor Goward as found in The Lichens of British Columbia. Part I - Foliose and Squamulose Species by Goward, McCune and Meldlnger. And the drawings of Masonhalea and Cetraria ericitorum are the work of Bethia Brehmer as found In Thomson's American Arctic Macrolichens. All photographs and line drawings were used by permission. Chiska Derr, Walter Neitlich, Roger Rosentreter, Thetus Smith, and Shelli Swanson provided valuable editing and draft comments. Thanks to Patty Rost and the staff of Gates of the Arctic National Park and Preserve for making this project possible.