An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
The Journal of Neuroscience, September 3, 2014 • 34(36):11929–11947 • 11929 Cellular/Molecular An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex Ye Zhang,1* Kenian Chen,2,3* Steven A. Sloan,1* Mariko L. Bennett,1 Anja R. Scholze,1 Sean O’Keeffe,4 Hemali P. Phatnani,4 XPaolo Guarnieri,7,9 Christine Caneda,1 Nadine Ruderisch,5 Shuyun Deng,2,3 Shane A. Liddelow,1,6 Chaolin Zhang,4,7,8 Richard Daneman,5 Tom Maniatis,4 XBen A. Barres,1† and XJia Qian Wu2,3† 1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125, 2The Vivian L. Smith Department of Neurosurgery, University of Texas Medical School at Houston, Houston, Texas 77057, 3Center for Stem Cell and Regenerative Medicine, University of Texas Brown Institute of Molecular Medicine, Houston, Texas 77057, 4Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032, 5Department of Anatomy, University of California, San Francisco, San Francisco, California 94143-0452, 6Department of Pharmacology and Therapeutics, University of Melbourne, Parkville, Victoria, Australia 3010, and 7Department of Systems Biology, 8Center for Motor Neuron Biology and Disease, and 9Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York 10032 The major cell classes of the brain differ in their developmental processes, metabolism, signaling, and function. To better understand the functions and interactions of the cell types that comprise these classes, we acutely purified representative populations of neurons, astrocytes, oligodendrocyte precursor cells, newly formed oligodendrocytes, myelinating oligodendrocytes, microglia, endothelial cells, and pericytes from mouse cerebral cortex.
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