Green Algae and the Origins of Multicellularity in the Plant Kingdom
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Volvox Carteri Benjamin Klein1, Daniel Wibberg2 and Armin Hallmann1*
Klein et al. BMC Biology (2017) 15:111 DOI 10.1186/s12915-017-0450-y RESEARCH ARTICLE Open Access Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri Benjamin Klein1, Daniel Wibberg2 and Armin Hallmann1* Abstract Background: One of evolution’s most important achievements is the development and radiation of multicellular organisms with different types of cells. Complex multicellularity has evolved several times in eukaryotes; yet, in most lineages, an investigation of its molecular background is considerably challenging since the transition occurred too far in the past and, in addition, these lineages evolved a large number of cell types. However, for volvocine green algae, such as Volvox carteri, multicellularity is a relatively recent innovation. Furthermore, V. carteri shows a complete division of labor between only two cell types – small, flagellated somatic cells and large, immotile reproductive cells. Thus, V. carteri provides a unique opportunity to study multicellularity and cellular differentiation at the molecular level. Results: This study provides a whole transcriptome RNA-Seq analysis of separated cell types of the multicellular green alga V. carteri f. nagariensis to reveal cell type-specific components and functions. To this end, 246 million quality filtered reads were mapped to the genome and valid expression data were obtained for 93% of the 14,247 gene loci. In the subsequent search for protein domains with assigned molecular function, we identified 9435 previously classified domains in 44% of all gene loci. Furthermore, in 43% of all gene loci we identified 15,254 domains that are involved in biological processes. All identified domains were investigated regarding cell type-specific expression. -
Flagellar, Cellular and Organismal Polarity in Volvox Carteri
SUNY Geneseo KnightScholar Biology Faculty/Staff Works Department of Biology 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops SUNY Geneseo Follow this and additional works at: https://knightscholar.geneseo.edu/biology Recommended Citation Hoops H.J. (1993) Flagellar, cellular and organismal polarity in Volvox carteri. Journal of Cell Science 104: 105-117. doi: This Article is brought to you for free and open access by the Department of Biology at KnightScholar. It has been accepted for inclusion in Biology Faculty/Staff Works by an authorized administrator of KnightScholar. For more information, please contact [email protected]. Journal of Cell Science 104, 105-117 (1993) 105 Printed in Great Britain © The Company of Biologists Limited 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops Department of Biology, 1 Circle Drive, SUNY-Genesco, Genesco, NY 14454, USA SUMMARY It has previously been shown that the flagellar appara- reorientation of flagellar apparatus components. This tus of the mature Volvox carteri somatic cell lacks the reorientation also results in the movement of the eye- 180˚ rotational symmetry typical of most unicellular spot from a position nearer one of the flagellar bases to green algae. This asymmetry has been postulated to be a position approximately equidistant between them. By the result of rotation of each half of the flagellar appa- analogy to Chlamydomonas, the anti side of the V. car - ratus. Here it is shown that V. carteri axonemes contain teri somatic cell faces the spheroid anterior, the syn side polarity markers that are similar to those found in faces the spheroid posterior. -
Chilling Out: the Evolution and Diversification of Psychrophilic Algae with a Focus on Chlamydomonadales
Polar Biol DOI 10.1007/s00300-016-2045-4 REVIEW Chilling out: the evolution and diversification of psychrophilic algae with a focus on Chlamydomonadales 1 1 1 Marina Cvetkovska • Norman P. A. Hu¨ner • David Roy Smith Received: 20 February 2016 / Revised: 20 July 2016 / Accepted: 10 October 2016 Ó Springer-Verlag Berlin Heidelberg 2016 Abstract The Earth is a cold place. Most of it exists at or Introduction below the freezing point of water. Although seemingly inhospitable, such extreme environments can harbour a Almost 80 % of the Earth’s biosphere is permanently variety of organisms, including psychrophiles, which can below 5 °C, including most of the oceans, the polar, and withstand intense cold and by definition cannot survive at alpine regions (Feller and Gerday 2003). These seemingly more moderate temperatures. Eukaryotic algae often inhospitable places are some of the least studied but most dominate and form the base of the food web in cold important ecosystems on the planet. They contain a huge environments. Consequently, they are ideal systems for diversity of prokaryotic and eukaryotic organisms, many of investigating the evolution, physiology, and biochemistry which are permanently adapted to the cold (psychrophiles) of photosynthesis under frigid conditions, which has (Margesin et al. 2007). The environmental conditions in implications for the origins of life, exobiology, and climate such habitats severely limit the spread of terrestrial plants, change. Here, we explore the evolution and diversification and therefore, primary production in perpetually cold of photosynthetic eukaryotes in permanently cold climates. environments is largely dependent on microbes. Eukaryotic We highlight the known diversity of psychrophilic algae algae and cyanobacteria are the dominant photosynthetic and the unique qualities that allow them to thrive in severe primary producers in cold habitats, thriving in a surprising ecosystems where life exists at the edge. -
Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes
Current Biology 21, 328–333, February 22, 2011 ª2011 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2011.01.037 Report Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes Cheong Xin Chan,1,5 Eun Chan Yang,2,5 Titas Banerjee,1 sequences in our local database, in which we included the Hwan Su Yoon,2,* Patrick T. Martone,3 Jose´ M. Estevez,4 23,961 predicted proteins from C. tuberculosum (see Table and Debashish Bhattacharya1,* S1 available online). Of these hits, 9,822 proteins (72.1%, 1Department of Ecology, Evolution, and Natural Resources including many P. cruentum paralogs) were present in C. tuber- and Institute of Marine and Coastal Sciences, Rutgers culosum and/or other red algae, 6,392 (46.9%) were shared University, New Brunswick, NJ 08901, USA with C. merolae, and 1,609 were found only in red algae. A total 2Bigelow Laboratory for Ocean Sciences, West Boothbay of 1,409 proteins had hits only to red algae and one other Harbor, ME 04575, USA phylum. Using this repertoire, we adopted a simplified recip- 3Department of Botany, University of British Columbia, 6270 rocal BLAST best-hits approach to study the pattern of exclu- University Boulevard, Vancouver, BC V6T 1Z4, Canada sive gene sharing between red algae and other phyla (see 4Instituto de Fisiologı´a, Biologı´a Molecular y Neurociencias Experimental Procedures). We found that 644 proteins showed (IFIBYNE UBA-CONICET), Facultad de Ciencias Exactas y evidence of exclusive gene sharing with red algae. Of these, Naturales, Universidad de Buenos Aires, 1428 Buenos Aires, 145 (23%) were found only in red + green algae (hereafter, Argentina RG) and 139 (22%) only in red + Alveolata (Figure 1A). -
Algal Sex Determination and the Evolution of Anisogamy James Umen, Susana Coelho
Algal Sex Determination and the Evolution of Anisogamy James Umen, Susana Coelho To cite this version: James Umen, Susana Coelho. Algal Sex Determination and the Evolution of Anisogamy. Annual Review of Microbiology, Annual Reviews, 2019, 73 (1), 10.1146/annurev-micro-020518-120011. hal- 02187088 HAL Id: hal-02187088 https://hal.sorbonne-universite.fr/hal-02187088 Submitted on 17 Jul 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Annu. Rev. Microbiol. 2019. 73:X–X https://doi.org/10.1146/annurev-micro-020518-120011 Copyright © 2019 by Annual Reviews. All rights reserved Umen • Coelho www.annualreviews.org • Algal Sexes and Mating Systems Algal Sex Determination and the Evolution of Anisogamy James Umen1 and Susana Coelho2 1Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA; email: [email protected] 2Sorbonne Université, UPMC Université Paris 06, CNRS, Algal Genetics Group, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff, France [**AU: Please write the entire affiliation in French or write it all in English, rather than a combination of English and French**] ; email: [email protected] Abstract Algae are photosynthetic eukaryotes whose taxonomic breadth covers a range of life histories, degrees of cellular and developmental complexity, and diverse patterns of sexual reproduction. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Zygote Germination in Pleodorina Starrii (Volvocaceae, Chlorophyta)*
Biologia 63/6: 778—780, 2008 Section Botany DOI: 10.2478/s11756-008-0098-8 Zygote germination in Pleodorina starrii (Volvocaceae, Chlorophyta)* Hisayoshi Nozaki Department of Biological Sciences, Graduate School of Science, University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; e-mail: [email protected] Abstract: Zygote germination of the anisogamous/oogamous colonial green flagellate Pleodorina starrii was observed. After the zygotes were transferred to the usual, illuminated conditions from the dark treatment on the agar plate, they began to germinate. The germinating zygotes gave rise to one or two viable biflagellate gone cells. This type of zygote germination is rare in the colonial Volvocales and may characterize a certain lineage within the anisogamous/oogamous members of the colonial Volvocales. Key words: Chlorophyta; Volvocales; Volvocaceae; Pleodorina starrii; morphology; zygote germination Introduction packet formation, conjugation between male and female ga- metes and zygote maturation occurred. Mature zygotes were transferred to 1% agar plates (AF-6 medium, Kasai et al. During our research of the male specific “OTOKOGI” ◦ (PlestMID) gene in the anisogamous/oogamous colo- 2004), and put into darkness for 1–3 months at 20–25 C. nial volvocalean Pleodorina starrii (Nozaki et al. After the dark treatment, the zygotes were transferred to the liquid AF-6 medium under 14:10 h LD and 20–25 ◦C. 2006a, Nozaki 2008) two heterothallic strains (2000- Light microscopy was carried out using an OLYMPUS BX60 602-P14female and 2000-602-P15male) of P. starrii microscope (KS OLYMPUS, Tokyo, Japan), equipped with were used. These two strains were established in June Nomarski interference optics. -
Algae of the Genus Volvox (Chlorophyta) in Sub-Extreme Habitats T A.G
Short Communication T REPRO N DU The International Journal of Plant Reproductive Biology 12(2) July, 2020, pp.156-158 LA C P T I F V O E B Y T I DOI 10.14787/ijprb.2020 12.2. O E I L O C G O S I S T E S H Algae of the genus Volvox (Chlorophyta) in sub-extreme habitats T A.G. Desnitskiy Department of Embryology, Saint-Petersburg State University, Saint-Petersburg, 199034, Universitetskaya nab. 7/9, Russia e-mail: [email protected]; [email protected] Received: 18. 05. 2020; Revised: 08. 06. 2020; Accepted and Published online: 15. 06. 2020 ABSTRACT Literature data on the life of green colonial algae of the genus Volvox (Chlorophyta) in sub-extreme habitats (polar, sub-polar and mountain regions) are critically considered. Very few species (primarily homothallic Volvox aureus) are able to thrive in such conditions. Keywords : Geographical distribution, reproduction, sub-extreme habitats, Volvox. The genus Volvox Linnaeus (Volvocaceae, Chlorophyta) Peru (South America) at the elevation of more than five includes more than 20 species of freshwater flagellate algae thousand meters above sea level seems to be doubtful. The (Nozaki et al. 2015), providing an opportunity to study the illustration from this article (which focuses mainly on developmental mechanisms in a relatively simple system diatoms) shows a spherical colony with a diameter of about 14 consisting of two cellular types (somatic and reproductive). μm, consisting of several hundred very small cells (Fritz et al. Volvox carteri f. nagariensis Iyengar is a valuable model of 2015, p. -
Detergent-Extracted Volvox Model Exhibits an Anterior–Posterior Gradient in Flagellar Ca2+ Sensitivity
Detergent-extracted Volvox model exhibits an PNAS PLUS + anterior–posterior gradient in flagellar Ca2 sensitivity Noriko Uekia and Ken-ichi Wakabayashia,1 aLaboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama-shi, Kanagawa 226-8503, Japan Edited by Krishna K. Niyogi, Howard Hughes Medical Institute, University of California, Berkeley, CA, and approved December 8, 2017 (received for review September 1, 2017) Volvox rousseletii is a multicellular spheroidal green alga contain- suggested by studies using demembranated and reactivated cells ing ∼5,000 cells, each equipped with two flagella (cilia). This or- and flagella (5, 6). ganism shows striking photobehavior without any known Multicellular spheroidal species of Volvocales, including Volvox intercellular communication. To help understand how the behav- species, have often been regarded as colonial Chlamydomonas. ior of flagella is regulated, we developed a method to extract the However, alignment of Chlamydomonas cells on the surface of a whole organism with detergent and reactivate its flagellar motil- spheroid, with each cell displaying breaststroke-like flagellar ity. Upon addition of ATP, demembranated flagella (axonemes) in beating, would result in spheroids unable to swim in one direction. the spheroids actively beat and the spheroids swam as if they Unlike a C. reinhardtii cell, each cell in a Volvox spheroid has two + were alive. Under Ca2 -free conditions, the axonemes assumed flagella beating in the same direction. A Volvox spheroid has an planar and asymmetrical waveforms and beat toward the poste- anterior–posterior (A–P) axis, and its ∼10,000 flagella beat toward rior pole, as do live spheroids in the absence of light stimulation. -
Effect of the Expression and Knockdown of Citrate Synthase Gene on Carbon Flux During Triacylglycerol Biosynthesis by Green Algae Chlamydomonas Reinhardtii
Deng et al. BMC Biochemistry 2013, 14:38 http://www.biomedcentral.com/1471-2091/14/38 RESEARCH ARTICLE Open Access Effect of the expression and knockdown of citrate synthase gene on carbon flux during triacylglycerol biosynthesis by green algae Chlamydomonas reinhardtii Xiaodong Deng2, Jiajia Cai1 and Xiaowen Fei1* Abstract Background: The regulation of lipid biosynthesis is essential in photosynthetic eukaryotic cells. This regulation occurs during the direct synthesis of fatty acids and triacylglycerols (TAGs), as well as during other controlling processes in the main carbon metabolic pathway. Results: In this study, the mRNA levels of Chlamydomonas citrate synthase (CrCIS) were found to decrease under nitrogen-limited conditions, which suggests suppressed gene expression. Gene silencing by RNA interference (RNAi) was conducted to determine whether CrCIS suppression affected the carbon flux in TAG biosynthesis. Results showed that the TAG level increased by 169.5%, whereas the CrCIS activities in the corresponding transgenic algae decreased by 16.7% to 37.7%. Moreover, the decrease in CrCIS expression led to the increased expression of TAG biosynthesis-related genes, such as acyl-CoA:diacylglycerol acyltransferase and phosphatidate phosphatase. Conversely, overexpression of CrCIS gene decreased the TAG level by 45% but increased CrCIS activity by 209% to 266% in transgenic algae. Conclusions: The regulation of CrCIS gene can indirectly control the lipid content of algal cells. Our findings propose that increasing oil by suppressing CrCIS expression in microalgae is feasible. Keywords: Citrate synthase, Triacylglycerol biosynthesis, RNAi interference, Overexpression, Chlamydomonas reinhardtii, Nitrogen deprivation Background formation of high lipid production and high cell-density Considering that fossil fuel resources are limited, the im- cultures. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
A Taxonomic Reassessment of Chlamydomonas Meslinii (Volvocales, Chlorophyceae) with a Description of Paludistella Gen.Nov
Phytotaxa 432 (1): 065–080 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.432.1.6 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. HANI SUSANTI1,6, MASAKI YOSHIDA2, TAKESHI NAKAYAMA2, TAKASHI NAKADA3,4 & MAKOTO M. WATANABE5 1Life Science Innovation, School of Integrative and Global Major, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. 2Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Japan. 3Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan. 4Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan. 5Algae Biomass Energy System Development and Research Center, University of Tsukuba. 6Research Center for Biotechnology, Indonesian Institute of Sciences, Jl. Raya Bogor KM 46 Cibinong West Java, Indonesia. Corresponding author: [email protected] Abstract Chlamydomonas (Volvocales, Chlorophyceae) is a large polyphyletic genus that includes numerous species that should be classified into independent genera. The present study aimed to examine the authentic strain of Chlamydomonas meslinii and related strains based on morphological and molecular data. All the strains possessed an asteroid chloroplast with a central pyrenoid and hemispherical papilla; however, they were different based on cell and stigmata shapes. Molecular phylogenetic analyses based on 18S rDNA, atpB, and psaB indicated that the strains represented a distinct subclade in the clade Chloromonadinia. The secondary structure of ITS-2 supported the separation of the strains into four species.