Virulence Factors and Pathogencity Islands in Staphylococcus Species: a Review
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Bacillus Crassostreae Sp. Nov., Isolated from an Oyster (Crassostrea Hongkongensis)
International Journal of Systematic and Evolutionary Microbiology (2015), 65, 1561–1566 DOI 10.1099/ijs.0.000139 Bacillus crassostreae sp. nov., isolated from an oyster (Crassostrea hongkongensis) Jin-Hua Chen,1,2 Xiang-Rong Tian,2 Ying Ruan,1 Ling-Ling Yang,3 Ze-Qiang He,2 Shu-Kun Tang,3 Wen-Jun Li,3 Huazhong Shi4 and Yi-Guang Chen2 Correspondence 1Pre-National Laboratory for Crop Germplasm Innovation and Resource Utilization, Yi-Guang Chen Hunan Agricultural University, 410128 Changsha, PR China [email protected] 2College of Biology and Environmental Sciences, Jishou University, 416000 Jishou, PR China 3The Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan Institute of Microbiology, Yunnan University, 650091 Kunming, PR China 4Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX 79409, USA A novel Gram-stain-positive, motile, catalase- and oxidase-positive, endospore-forming, facultatively anaerobic rod, designated strain JSM 100118T, was isolated from an oyster (Crassostrea hongkongensis) collected from the tidal flat of Naozhou Island in the South China Sea. Strain JSM 100118T was able to grow with 0–13 % (w/v) NaCl (optimum 2–5 %), at pH 5.5–10.0 (optimum pH 7.5) and at 5–50 6C (optimum 30–35 6C). The cell-wall peptidoglycan contained meso-diaminopimelic acid as the diagnostic diamino acid. The predominant respiratory quinone was menaquinone-7 and the major cellular fatty acids were anteiso-C15 : 0, iso-C15 : 0,C16 : 0 and C16 : 1v11c. The polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unknown glycolipid and an unknown phospholipid. The genomic DNA G+C content was 35.9 mol%. -
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SIDEROPHORE-MEDIATED IRON METABOLISM IN STAPHYLOCOCCUS AUREUS by Marek John Kobylarz B.Sc., The University of Victoria, 2010 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE AND POSTDOCTORAL STUDIES (Microbiology and Immunology) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) February 2016 © Marek John Kobylarz, 2016 Abstract Staphylococcus aureus requires iron as a nutrient and uses uptake systems to extract iron from the human host. S. aureus produces the iron-chelating siderophore staphyloferrin B (SB) to scavenge for available iron under conditions of low iron stress. Upon iron-siderophore re-entry into the cell, iron is separated from the siderophore complex to initiate assimilation into metabolism. To gain insight into how SB biosynthesis is integrated into S. aureus central metabolism, the three SB precursor biosynthetic proteins, SbnA, SbnB, and SbnG, were biochemically characterized. SbnG is a citrate synthase analogous to the citrate synthase enzyme present in the TCA cycle. The crystal structure of SbnG was solved and superpositions with TCA cycle citrate synthases support a model for convergent evolution in the active site architecture and a conserved catalytic mechanism. Since L-Dap is an essential precursor for SB, the biosynthetic pathway for L-Dap was elucidated. A combination of X-ray crystallography, biochemical assays and biophysical techniques were used to delineate the reaction mechanisms for SbnA and SbnB, demonstrating that SbnA performs a -replacement reaction using O-phospho-L-serine (OPS) and L-glutamate to produce N-(1-amino-1-carboxy-2-ethyl)-glutamic acid (ACEGA). Oxidative hydrolysis of ACEGA catalyzed by SbnB produces -ketoglutarate and L-Dap. -
Bacterial Communities of the Upper Respiratory Tract of Turkeys
www.nature.com/scientificreports OPEN Bacterial communities of the upper respiratory tract of turkeys Olimpia Kursa1*, Grzegorz Tomczyk1, Anna Sawicka‑Durkalec1, Aleksandra Giza2 & Magdalena Słomiany‑Szwarc2 The respiratory tracts of turkeys play important roles in the overall health and performance of the birds. Understanding the bacterial communities present in the respiratory tracts of turkeys can be helpful to better understand the interactions between commensal or symbiotic microorganisms and other pathogenic bacteria or viral infections. The aim of this study was the characterization of the bacterial communities of upper respiratory tracks in commercial turkeys using NGS sequencing by the amplifcation of 16S rRNA gene with primers designed for hypervariable regions V3 and V4 (MiSeq, Illumina). From 10 phyla identifed in upper respiratory tract in turkeys, the most dominated phyla were Firmicutes and Proteobacteria. Diferences in composition of bacterial diversity were found at the family and genus level. At the genus level, the turkey sequences present in respiratory tract represent 144 established bacteria. Several respiratory pathogens that contribute to the development of infections in the respiratory system of birds were identifed, including the presence of Ornithobacterium and Mycoplasma OTUs. These results obtained in this study supply information about bacterial composition and diversity of the turkey upper respiratory tract. Knowledge about bacteria present in the respiratory tract and the roles they can play in infections can be useful in controlling, diagnosing and treating commercial turkey focks. Next-generation sequencing has resulted in a marked increase in culture-independent studies characterizing the microbiome of humans and animals1–6. Much of these works have been focused on the gut microbiome of humans and other production animals 7–11. -
Occurrence and Quantification of Antimicrobial Resistance Genes In
BRIEF RESEARCH REPORT published: 22 March 2021 doi: 10.3389/fvets.2021.651781 Occurrence and Quantification of Antimicrobial Resistance Genes in the Gastrointestinal Microbiome of Two Wild Seabird Species With Contrasting Behaviors Edited by: Alain Hartmann, Ana Carolina Ewbank 1*†, Fernando Esperón 2†, Carlos Sacristán 1, Irene Sacristán 3, Institut National de Recherche pour 2 4 4 4 l’agriculture, l’alimentation et Elena Neves , Samira Costa-Silva , Marzia Antonelli , Janaina Rocha Lorenço , 4 1 l’environnement (INRAE), France Cristiane K. M. Kolesnikovas and José Luiz Catão-Dias Reviewed by: 1 Laboratory of Wildlife Comparative Pathology, Department of Pathology, School of Veterinary Medicine and Animal Hazem Ramadan, Sciences, University of São Paulo, São Paulo, Brazil, 2 Group of Epidemiology and Environmental Health, Animal Health Mansoura University, Egypt Research Centre (INIA-CISA), Madrid, Spain, 3 Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago, Chile, Getahun E. Agga, 4 Associação R3 Animal, Florianópolis, Brazil United States Department of Agriculture, United States Antimicrobial resistance genes (ARGs) are environmental pollutants and anthropization *Correspondence: Ana Carolina Ewbank indicators. We evaluated human interference in the marine ecosystem through the [email protected] ocurrence and quantification (real-time PCRs) of 21 plasmid-mediated ARGs in †These authors have contributed enema samples of 25 wild seabirds, upon admission into rehabilitation: kelp gull equally to this work and share first (Larus dominicanus, n = 14) and Magellanic penguin (Spheniscus magellanicus, authorship n = 11). Overall, higher resistance values were observed in kelp gulls (non-migratory Specialty section: coastal synanthropic) in comparison with Magellanic penguins (migratory pelagic This article was submitted to non-synanthropic). -
Detection of Staphylococcus Aureus and Other Coagulase Positive Staphylococci in Bovine Raw Milk in Khartoum State by Ikhtyar Ah
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by KhartoumSpace Detection of Staphylococcus aureus and other Coagulase Positive Staphylococci in Bovine Raw Milk in Khartoum State By Ikhtyar Ahmed Hassan Ali B.C.Sc (2003) Supervisor Prof. Mohammed Taha Shigiddi Department of Microbiology Faculty of Veterinary medicine A dissertation submitted to University of Khartoum in partial fulfillment for the requirement of the Degree of Master of Science in Microbiology Department of Microbiology Faculty of veterinary Medicine University of Khartoum 2010 Dedication to my father, mother, brothers and sisters with love I Table of Contents Subject Page Dedication………………………………………………………. I Table of Contents………………………………………………. II List of Figures…………………………………………………… VII List of Table…………………………………………………….. VIII Acknowledgments………………………………………………. IX Abstract…………………………………………………………. X Abstract (Arabic)……………………………………………… XI Introduction…………………………………………………… 1 Chapter One: Literature Review…………………………….. 3 1.1. Health Hazards of Raw Milk…………………………………… 4 1.2. Pathogenic bacteria in milk........................................................ 5 1.3. Microbial quality of raw milk.................................................... 6 1.4. Staphylococci........................................................................... 7 1.4.1. Coagulase positive staphylococci (CPS)……………………… 8 1.4.2. Coagulase negative staphylococci (CNS)……………………… 10 1.5. Staphylococcus aureus………………………………………… 10 1.5.1. Virulence characteristics of S. -
Demonstrating the Potential of Abiotic Stress-Tolerant Jeotgalicoccus Huakuii NBRI 13E for Plant Growth Promotion and Salt Stress Amelioration
Annals of Microbiology (2019) 69:419–434 https://doi.org/10.1007/s13213-018-1428-x ORIGINAL ARTICLE Demonstrating the potential of abiotic stress-tolerant Jeotgalicoccus huakuii NBRI 13E for plant growth promotion and salt stress amelioration Sankalp Misra1,2 & Vijay Kant Dixit 1 & Shashank Kumar Mishra1,2 & Puneet Singh Chauhan1,2 Received: 10 September 2018 /Accepted: 20 December 2018 /Published online: 2 January 2019 # Università degli studi di Milano 2019 Abstract The present study aimed to demonstrate the potential of abiotic stress-tolerant Jeotgalicoccus huakuii NBRI 13E for plant growth promotion and salt stress amelioration. NBRI 13E was characterized for abiotic stress tolerance and plant growth-promoting (PGP) attributes under normal and salt stress conditions. Phylogenetic comparison of NBRI 13E was carried out with known species of the same genera based on 16S rRNA gene. Plant growth promotion and rhizosphere colonization studies were determined under greenhouse conditions using maize, tomato, and okra. Field experiment was also performed to assess the ability of NBRI 13E inoculation for improving growth and yield of maize crop in alkaline soil. NBRI 13E demonstrated abiotic stress tolerance and different PGP attributes under in vitro conditions. Phylogenetic and differential physiological analysis revealed considerable differences in NBRI 13E as compared with the reported species for Jeotgalicoccus genus. NBRI 13E colonizes in the rhizosphere of the tested crops, enhances plant growth, and ameliorates salt stress in a greenhouse experiment. Modulation in defense enzymes, chlorophyll, proline, and soluble sugar content in NBRI 13E-inoculated plants leads to mitigate the deleterious effect of salt stress. Furthermore, field evaluation of NBRI 13E inoculation using maize was carried out with recommended 50 and 100% chemical fertilizer controls, which resulted in significant enhancement of all vegetative parameters and total yield as compared to respective controls. -
Greasy Pig Disease
Greasy Pig Disease Greasy Pig Disease is caused by a bacterium called Staphylococcus hyicus. Clinical signs are mostly seen with piglets which are up to 2 weeks old, but it can affect pigs up to 6 weeks of age and older. The bacterium is transmitted from pig to pig and is contagious (can spread easily). In pre-weaned pigs, a few piglets or a litter may be affected, in contrast to post-weaned animals when litters are mixed and a greater number of pigs can show clinical signs. Staphylococcus hyicus is found on the skin and does not usually cause clinical disease. The reservoir of infection for piglets is the sow’s skin and the bacterium is transmitted to the piglet following direct skin contact with her during the farrowing period. For clinical signs to develop, entry into the pig has to be gained, and this occurs through skin wounds or abrasions where the skin defence barrier is weakened. These can be caused by fighting, the environment, or even parasite damage such as that caused by Mange mites. Further spread of the bacterium between piglets occurs when they are in an environment that is warm and has high humidity. Clinical Signs After gaining entry through the skin, the bacterium infects the local area, which then becomes painful and reddened. The skin becomes thickened and oozes, progressing to a covering of greasy brown scabs that can extend over the whole body. These lesions are not itchy, but they do Picture from pictureASAS gallery leave the piglet’s skin susceptible to Greasy brown scabs commonly seen with other potential secondary infections. -
Impact of Topical Antimicrobial Treatments on Skin Bacterial Communities
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2017 Impact Of Topical Antimicrobial Treatments On Skin Bacterial Communities Adam Sanmiguel University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Bioinformatics Commons, and the Microbiology Commons Recommended Citation Sanmiguel, Adam, "Impact Of Topical Antimicrobial Treatments On Skin Bacterial Communities" (2017). Publicly Accessible Penn Dissertations. 2567. https://repository.upenn.edu/edissertations/2567 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/2567 For more information, please contact [email protected]. Impact Of Topical Antimicrobial Treatments On Skin Bacterial Communities Abstract Skin is our primary interface to the outside world, representing a diverse habitat with a multitude of folds, invaginations, and appendages. While each of these structures is essential to host cutaneous function, they also serve as unique ecological niches that can support an array of microbial inhabitants. Together, these microorganisms constitute the skin microbiome, an assemblage of bacteria, fungi, and viruses with the potential to influence cutaneous biology. While a number of studies have described the importance of these residents to immune function and development, none to date have assessed their dynamics in response to antimicrobial stress, nor the impact of these perturbations on host cutaneous defense. Rather the majority of work in this regard has focused on a subset of microorganisms studied in isolation. Herein, we present the impact of topical antibiotics and antiseptics on skin bacterial communities, and describe their potential to shape cutaneous interactions. Using mice as a model system, we show that antibiotics can elicit a distinct shift in skin inhabitants characterized by decreases in diversity and domination by previously minor contributors. -
Staphylococcus Aureus and Other Staphylococci by an Endolysin A.C
Killing and lysis of Staphylococcus aureus and other staphylococci by an endolysin A.C. Fluit1, S. van Marm1, F. Eichenseher2, M.J. Loessner2, F. Pietersma3, and C.H.E. Boel1 1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands; 2Institute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland; 3Micreos BV, Wageningen, The Netherlands Introduction Results Table 1. Lysis results for the tested strains after The use of endolysins for the treatment of ■ All Staphylococcus aureus strains could be lysed by the endolysin (Table 1). 30 min and 60 µg/mL endolysin. skin infections or decontamination may A concentration of 30 µg/mL was still considered to be effective (example in species remarks result circumvent antibiotic resistance. Micreos has Fig. 1). lysis (%) Staphylococcus aureus Hospital-associated MRSA 50 developed an endolysin as a potential ■ Staphylococcus pseudointermedius, and Staphylococcus hyicus also showed Community-associated antibacterial compound. Staphefekt.SA100 a good lysis, whereas lysis of Staphylococcus capitis and Staphyloccus homonis Staphylococcus aureus MRSA 60 Livestock-associated is a chimeric lysin featuring endopeptidase was less. Lysis of Staphylococcus epidermidis and Staphylococcus Staphylococcus aureus MRSA 70 and putative amidase activities. The aim of haemolyticus was hardly observed and was absent for Staphylococcus Staphylococcus aureus methicillin susceptible 50 Staphylococcus aureus methicillin susceptible 50 this study was to determine the species lugdunensis. Staphylococcus epidermidis methicillin resistant 0 Staphylococcus epidermidis methicillin susceptible 10 specificity of Staphefekt.SA100, the ■ For the other species tested lysis could not be detected (Table 1). Staphylococcus haemolyticus 10 killing efficiency and effective concentration ■ For all S. aureus isolates excellent killing (>100x) was observed within 6 h Staphylococcus hominis 20 Staphylococcus pseudointermedius 40 against several staphylococcal species. -
Investigation of the Viral and Bacterial Microbiota in Intestinal
Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing Birch, Julie Melsted; Ullman, Karin; Struve, Tina; Agger, Jens Frederik; Hammer, Anne Sofie; Leijon, Mikael; Jensen, Henrik Elvang Published in: PLOS ONE DOI: 10.1371/journal.pone.0205890 Publication date: 2018 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Birch, J. M., Ullman, K., Struve, T., Agger, J. F., Hammer, A. S., Leijon, M., & Jensen, H. E. (2018). Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing. PLOS ONE, 13(10), [0205890]. https://doi.org/10.1371/journal.pone.0205890 Download date: 09. apr.. 2020 RESEARCH ARTICLE Investigation of the viral and bacterial microbiota in intestinal samples from mink (Neovison vison) with pre-weaning diarrhea syndrome using next generation sequencing 1 2 3 1 Julie Melsted BirchID *, Karin Ullman , Tina Struve , Jens Frederik Agger , Anne Sofie Hammer1, Mikael Leijon2, Henrik Elvang Jensen1 a1111111111 1 Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C, Denmark, 2 Department of Microbiology, National Veterinary Institute, a1111111111 Uppsala, Sweden, 3 Kopenhagen Fur Diagnostics, Kopenhagen Fur, Glostrup, Denmark a1111111111 a1111111111 * [email protected] a1111111111 Abstract Pre-weaning diarrhea (PWD) in mink kits is a common multifactorial syndrome on commer- OPEN ACCESS cial mink farms. Several potential pathogens such as astroviruses, caliciviruses, Escherichia Citation: Birch JM, Ullman K, Struve T, Agger JF, coli and Staphylococcus delphini have been studied, but the etiology of the syndrome Hammer AS, Leijon M, et al. -
The Genera Staphylococcus and Macrococcus
Prokaryotes (2006) 4:5–75 DOI: 10.1007/0-387-30744-3_1 CHAPTER 1.2.1 ehT areneG succocolyhpatS dna succocorcMa The Genera Staphylococcus and Macrococcus FRIEDRICH GÖTZ, TAMMY BANNERMAN AND KARL-HEINZ SCHLEIFER Introduction zolidone (Baker, 1984). Comparative immu- nochemical studies of catalases (Schleifer, 1986), The name Staphylococcus (staphyle, bunch of DNA-DNA hybridization studies, DNA-rRNA grapes) was introduced by Ogston (1883) for the hybridization studies (Schleifer et al., 1979; Kilp- group micrococci causing inflammation and per et al., 1980), and comparative oligonucle- suppuration. He was the first to differentiate otide cataloguing of 16S rRNA (Ludwig et al., two kinds of pyogenic cocci: one arranged in 1981) clearly demonstrated the epigenetic and groups or masses was called “Staphylococcus” genetic difference of staphylococci and micro- and another arranged in chains was named cocci. Members of the genus Staphylococcus “Billroth’s Streptococcus.” A formal description form a coherent and well-defined group of of the genus Staphylococcus was provided by related species that is widely divergent from Rosenbach (1884). He divided the genus into the those of the genus Micrococcus. Until the early two species Staphylococcus aureus and S. albus. 1970s, the genus Staphylococcus consisted of Zopf (1885) placed the mass-forming staphylo- three species: the coagulase-positive species S. cocci and tetrad-forming micrococci in the genus aureus and the coagulase-negative species S. epi- Micrococcus. In 1886, the genus Staphylococcus dermidis and S. saprophyticus, but a deeper look was separated from Micrococcus by Flügge into the chemotaxonomic and genotypic proper- (1886). He differentiated the two genera mainly ties of staphylococci led to the description of on the basis of their action on gelatin and on many new staphylococcal species. -
Bacterial Flora on the Mammary Gland Skin of Sows and in Their Colostrum
Brief communication Peer reviewed Bacterial flora on the mammary gland skin of sows and in their colostrum Nicole Kemper, Prof, Dr med vet; Regine Preissler, DVM Summary Resumen - La flora bacteriana en la piel de Résumé - Flore bactérienne cutanée de la Mammary-gland skin swabs and milk la glándula mamaria de las hembras y en su glande mammaire de truies et de leur lait calostro samples were analysed bacteriologically. All Des écouvillons de la peau de la glande skin samples were positive, with 5.2 isolates Se analizaron bacteriológicamente hisopos de mammaire ainsi que des échantillons de lait on average, Staphylococcaceae being the la piel de la glándula mamaria y muestras de ont été soumis à une analyse bactériologique. dominant organisms. In 20.8% of milk leche. Todas las muestras de piel resultaron Tous les échantillons provenant de la peau samples, no bacteria were detected. Two iso- positivas, con 5.2 aislados en promedio, étaient positifs, avec en moyenne 5.2 isolats lates on average, mainly Staphylococcaceae siendo los Staphylococcaceae los organismos bactériens, les Staphylococcaceae étant de loin and Streptococcaceae, were isolated from the dominantes. En 20.8% de las muestras de les micro-organismes dominants. Aucune positive milk samples. leche, no se detectaron bacterias. De las bactérie ne fut détectée dans 20.8% des Keywords: swine, bacteria, colostrum, muestras de leche positivas, se aislaron échantillons de lait. En moyenne, on trouvait mammary gland, skin dos aislados en promedio, principalmente deux isolats bactériens par échantillon de lait Staphylococcaceae y los Streptococcaceae. positif, et ceux-ci étaient principalement des Received: April 7, 2010 Staphylococcaceae et des Streptococcaceae.