Syntaxins 3 and 4 Mediate Vesicular Trafficking of Α5β1 and Α3β1 Integrins and Cancer Cell Migration
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VAMP3 and VAMP8 Regulate the Development and Functionality of 5 Parasitophorous Vacuoles Housing Leishmania Amazonensis
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.09.195032; this version posted July 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 2 3 4 VAMP3 and VAMP8 regulate the development and functionality of 5 parasitophorous vacuoles housing Leishmania amazonensis 6 7 8 Olivier Séguin1, Linh Thuy Mai1, Sidney W. Whiteheart2, Simona Stäger1, Albert Descoteaux1* 9 10 11 12 1Institut national de la recherche scientifique, Centre Armand-Frappier Santé Biotechnologie, 13 Laval, Québec, Canada 14 15 2Department of Molecular and Cellular Biochemistry, University of Kentucky College of 16 Medicine, Lexington, Kentucky, United States of America 17 18 19 *Corresponding author: 20 E-mail: [email protected] 21 22 23 24 Short title: SNAREs and Leishmania-harboring communal parasitophorous vacuoles 25 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.09.195032; this version posted July 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 26 ABSTRACT 27 28 To colonize mammalian phagocytic cells, the parasite Leishmania remodels phagosomes into 29 parasitophorous vacuoles that can be either tight-fitting individual or communal. The molecular 30 and cellular bases underlying the biogenesis and functionality of these two types of vacuoles are 31 poorly understood. -
Differential Requirement of NPHP1 for Compartmentalized Protein Localization During
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427412; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Differential requirement of NPHP1 for compartmentalized protein localization during 2 photoreceptor outer segment development and maintenance 3 4 Poppy Dattaa,b,#, J. Thomas Cribbsa,b,#, and Seongjin Seoa,b,* 5 6 aDepartment of Ophthalmology and Visual Sciences, The University of Iowa Carver College of Medicine, Iowa 7 City, IA 52242, U.S.A. 8 bInstitute for Vision Research, The University of Iowa, Iowa City, IA 52242, U.S.A. 9 10 11 #Equally contributed 12 *To whom correspondence should be addressed: 13 Seongjin Seo, PhD 14 Department of Ophthalmology and Visual Sciences 15 University of Iowa College of Medicine 16 375 Newton Rd 17 3181D MERF 18 Iowa City, IA 52242, U.S.A. 19 Phone: 1-319-353-4477 20 Email: [email protected] 21 22 Running title: Roles of NPHP1 in photoreceptors 23 Keywords: cilia; ciliary gate; compartmentalization; inherited retinal degeneration; nonsense-associated altered 24 splicing; protein confinement; transition zone 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.20.427412; this version posted January 20, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Defining the Kv2.1–Syntaxin Molecular Interaction Identifies a First-In-Class Small Molecule Neuroprotectant
Defining the Kv2.1–syntaxin molecular interaction identifies a first-in-class small molecule neuroprotectant Chung-Yang Yeha,b,1, Zhaofeng Yec,d,1, Aubin Moutale, Shivani Gaura,b, Amanda M. Hentonf,g, Stylianos Kouvarosf,g, Jami L. Salomana, Karen A. Hartnett-Scotta,b, Thanos Tzounopoulosa,f,g, Rajesh Khannae, Elias Aizenmana,b,g,2, and Carlos J. Camachoc,2 aDepartment of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; bPittsburgh Institute for Neurodegenerative Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; cDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; dSchool of Medicine, Tsinghua University, Beijing 100871, China; eDepartment of Pharmacology, College of Medicine, University of Arizona, Tucson, AZ 85724; fDepartment of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261; and gPittsburgh Hearing Research Center, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261 Edited by Lily Yeh Jan, University of California, San Francisco, CA, and approved June 19, 2019 (received for review February 27, 2019) + The neuronal cell death-promoting loss of cytoplasmic K follow- (13). The Kv2.1-dependent cell death pathway is normally initiated ing injury is mediated by an increase in Kv2.1 potassium channels in by the oxidative liberation of zinc from intracellular metal-binding the plasma membrane. This phenomenon relies on Kv2.1 binding to proteins (14), leading to the sequential phosphorylation of syntaxin 1A via 9 amino acids within the channel intrinsically disor- Kv2.1 residues Y124 and S800 by Src and p38 kinases, respectively dered C terminus. Preventing this interaction with a cell and blood- (15–17). -
Fluorescence Lifetime Imaging Microscopy Reveals Rerouting Of
RESEARCH ARTICLE Fluorescence Lifetime Imaging Microscopy reveals rerouting of SNARE trafficking driving dendritic cell activation Danie¨ lle Rianne Jose´ Verboogen, Natalia Gonza´ lez Mancha, Martin ter Beest, Geert van den Bogaart* Department of Tumor Immunology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands Abstract SNARE proteins play a crucial role in intracellular trafficking by catalyzing membrane fusion, but assigning SNAREs to specific intracellular transport routes is challenging with current techniques. We developed a novel Fo¨ rster resonance energy transfer-fluorescence lifetime imaging microscopy (FRET-FLIM)-based technique allowing visualization of real-time local interactions of fluorescently tagged SNARE proteins in live cells. We used FRET-FLIM to delineate the trafficking steps underlying the release of the inflammatory cytokine interleukin-6 (IL-6) from human blood- derived dendritic cells. We found that activation of dendritic cells by bacterial lipopolysaccharide leads to increased FRET of fluorescently labeled syntaxin 4 with VAMP3 specifically at the plasma membrane, indicating increased SNARE complex formation, whereas FRET with other tested SNAREs was unaltered. Our results revealed that SNARE complexing is a key regulatory step for cytokine production by immune cells and prove the applicability of FRET-FLIM for visualizing SNARE complexes in live cells with subcellular spatial resolution. DOI: 10.7554/eLife.23525.001 *For correspondence: geert. [email protected] Introduction Competing interests: The One of the central paradigms in cell biology is that all intracellular membrane fusion, except for authors declare that no mitochondrial fusion, is catalyzed by soluble NSF (N-ethylmaleimide-sensitive fusion protein) attach- competing interests exist. ment protein receptor (SNARE) proteins (Hong, 2005; Jahn and Scheller, 2006). -
Human VAMP3 Suppresses Or Negatively Regulates Bax Induced Apoptosis in Yeast
biomedicines Article Human VAMP3 Suppresses or Negatively Regulates Bax Induced Apoptosis in Yeast Damilare D. Akintade 1,2,* and Bhabatosh Chaudhuri 2 1 School of Life Sciences, Medical School, University of Nottingham, Nottingham NG7 2UH, UK 2 Leicester School of Pharmacy, De Montfort University, Leicester LE1 9BH, UK; [email protected] * Correspondence: [email protected] Abstract: Apoptosis is an essential process that is regulated genetically and could lead to a serious disease condition if not well controlled. Bax is one of the main proapoptotic proteins and actively involved in programmed cell death. It has been suggested that Bax induced apoptosis in yeast could be obstructed by enhancing vesicular membrane trafficking. Plasma membrane proteins and lipid oxidation were reduced by a vesicle-associated membrane protein (VAMP) when expressed in yeast, suggesting its potential role in repairing membranes. Membrane integrity is crucial, as the loss of membrane integrity will result in the leakage of ions from mitochondria, and ultimately cell death due to overproduction of reactive oxygen species (ROS). Expression of Arabidopsis’ VAMP has been linked to antiapoptosis activity. Since plant VAMP has been associated with antiapoptotic activities, this study investigates the possible participation of human VAMP3 in blocking human Bax mediated apoptosis. Some novel genes were identified to rescue Bax’s proapoptotic effects, in a yeast-based human hippocampal cDNA library screen. VAMP3 (a gene code for proteins involved in protein secretion) gene was chosen for further study to confirm its role in inhibiting apoptosis. VAMP3 was coexpressed with a chromosomally integrated Bax gene expression cassette driven by the GAL1 promoter. -
Identification of a Novel Autophagy-Related Gene Signature
Identication of a novel autophagy-related gene signature for predicting metastasis and survival in patients with osteosarcoma Guangzhi Zhang Lanzhou University Second Hospital https://orcid.org/0000-0003-3193-0297 Yajun Deng Lanzhou University Second Hospital Zuolong Wu Lanzhou University Second Hospital Enhui Ren Lanzhou University Second Hospital Wenhua Yuan Lanzhou University Second Hospital Qiqi Xie ( [email protected] ) Lanzhou University Second Hospital https://orcid.org/0000-0003-4099-5287 Primary research Keywords: osteosarcoma, autophagy-related genes, signature, survival, metastasis Posted Date: March 26th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-19384/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/20 Abstract Background: Osteosarcoma (OS) is a bone malignant tumor that occurs in children and adolescents. Due to a lack of reliable prognostic biomarkers, the prognosis of OS patients is often uncertain. This study aimed to construct an autophagy-related gene signature to predict the prognosis of OS patients. Methods: The gene expression prole data of OS and normal muscle tissue samples were downloaded separately from the Therapeutically Applied Research To Generate Effective Treatments (TARGET) and Genotype-Tissue Expression (GTEx) databases . The differentially expressed autophagy-related genes (DEARGs) in OS and normal muscle tissue samples were screened using R software, before being subjected to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. A protein-protein interaction (PPI) network was constructed and hub autophagy-related genes were screened. Finally, the screened autophagy-related genes were subjected to univariate Cox regression, Lasso Cox regression, survival analysis, and clinical correlation analysis. -
Syntaxin 2 Acts As Inhibitory SNARE for Insulin Granule Exocytosis
Page 1 of 37 Diabetes Syntaxin 2 Acts as Inhibitory SNARE for Insulin Granule Exocytosis Dan Zhu1,4, Li Xie1,4, Youhou Kang1,4, Subhankar Dolai1,4, Jakob Bondo Hansen1, Tairan Qin1, Huanli Xie1, Tao Liang1, Deborah C Rubin3, Lucy Osborne1,2, Herbert Y. Gaisano1 Affiliations: 1Departments of Medicine and 2Molecular Genetics, University of Toronto, Toronto, ON, Canada 3Departments of Medicine and Developmental Biology, Washington University School of Medicine, St. Louis, MO, USA 4Equal contributors Running Title: Syntaxin 2 deletion increases secretion Correspondence to: Herbert Y. Gaisano University of Toronto, 1 King’s College Circle, Rm. 7368 Toronto, ON, Canada, M5S 1A8, Tel.: (416)978-1526 Email: [email protected] 1 Diabetes Publish Ahead of Print, published online January 23, 2017 Diabetes Page 2 of 37 ABSTRACT Of the four syntaxins (Syns) specialized for exocytosis, syntaxin-2 is the least understood. Here, we employed syntaxin-2/epimorphin knockout (KO) mice to examine the role of syntaxin-2 in insulin secretory granule (SG) exocytosis. Unexpectedly, syntaxin-2 KO mice exhibited paradoxical superior glucose homeostasis resulting from an enhanced insulin secretion. This was confirmed in vitro by pancreatic islet perifusion showing an amplified biphasic glucose- stimulated insulin secretion (GSIS) arising from an increase in size of the readily-releasable pool of insulin SGs and enhanced SG pool refilling. The increase in insulin exocytosis was attributed mainly from an enhanced recruitment of the larger pool of newcomer SGs that undergoes no residence time on plasma membrane before fusion, and to lesser extent also the predocked SGs. Consistently, syntaxin-2 depletion resulted in stimulation-induced increase in abundance of exocytotic complexes we previous demonstrated to mediate the fusion of newcomer SGs (Syn- 3/VAMP8/SNAP25/Munc18b) and predocked SGs (Syn-1A/VAMP2/SNAP25/Muncn18a). -
Shiga Toxin Stimulates Clathrin-Independent Endocytosis Of
© 2015. Published by The Company of Biologists Ltd | Journal of Cell Science (2015) 128, 2891-2902 doi:10.1242/jcs.171116 RESEARCH ARTICLE Shiga toxin stimulates clathrin-independent endocytosis of the VAMP2, VAMP3 and VAMP8 SNARE proteins Henri-François Renard1,2,3, Maria Daniela Garcia-Castillo1,2,3, Valérie Chambon1,2,3, Christophe Lamaze2,3,4 and Ludger Johannes1,2,3,* ABSTRACT existence of endocytic processesthat operate independentlyof clathrin Endocytosis is an essential cellular process that is often hijacked by (reviewed in Blouin and Lamaze, 2013; Doherty and McMahon, pathogens and pathogenic products. Endocytic processes can be 2009; Mayor et al., 2014; Sandvig et al., 2011), including the cellular classified into two broad categories, those that are dependent on uptake of the bacterial Shiga toxin (STx) (Renard et al., 2015; Römer clathrin and those that are not. The SNARE proteins VAMP2, VAMP3 et al., 2007). and VAMP8 are internalized in a clathrin-dependent manner. Shiga toxin is composed of two subunits, A and B (Johannes and However, the full scope of their endocytic behavior has not yet Romer, 2010). The catalytic A-subunit modifies ribosomal RNA in been elucidated. Here, we found that VAMP2, VAMP3 and VAMP8 the cytosol of target cells, leading to protein biosynthesis inhibition. are localized on plasma membrane invaginations and very early To reach the cytosol, the A-subunit non-covalently interacts with the uptake structures that are induced by the bacterial Shiga toxin, which homopentameric B-subunit (STxB). STxB binds to the cellular enters cells by clathrin-independent endocytosis. We show that toxin toxin receptor, the glycosphingolipid Gb3, and then shuttles the trafficking into cells and cell intoxication rely on these SNARE holotoxin through the retrograde route from the plasma membrane proteins. -
Syntaxin Binding Mechanism and Disease-Causing Mutations in Munc18-2
Syntaxin binding mechanism and disease-causing mutations in Munc18-2 Yvonne Hackmanna, Stephen C. Grahama,1,2, Stephan Ehlb, Stefan Höningc, Kai Lehmbergd, Maurizio Aricòe, David J. Owena, and Gillian M. Griffithsa,2 aCambridge Institute for Medical Research, University of Cambridge Biomedical Campus, University of Cambridge, Cambridge CB2 0XY, United Kingdom; bCentre of Chronic Immunodeficiency, 79106 Freiburg, Germany; cInstitute for Biochemistry I and Center for Molecular Medicine Cologne, University of Cologne, 50931 Cologne, Germany; dDepartment of Paediatric Haematology and Oncology, University Medical Center Hamburg Eppendorf, 20246 Hamburg, Germany; and ePediatric Hematology Oncology Network, Istituto Toscana Tumori, 50139 Florence, Italy Edited* by Peter Cresswell, Yale University School of Medicine, New Haven, CT, and approved October 11, 2013 (received for review July 18, 2013) Mutations in either syntaxin 11 (Stx11) or Munc18-2 abolish Munc18-2 belongs to the Sec1/Munc18-like (SM) protein cytotoxic T lymphocytes (CTL) and natural killer cell (NK) cytotox- family, whose members are all ∼600 residues long and are in- icity, and give rise to familial hemophagocytic lymphohistiocytosis volved in regulation of SNARE-mediated membrane fusion (FHL4 or FHL5, respectively). Although Munc18-2 is known to events (9, 10). The two closest homologs of Munc18-2 are interact with Stx11, little is known about the molecular mecha- Munc18-1, which is crucial for neurotransmitter secretion in nisms governing the specificity of this interaction or how in vitro neurons (11, 12), and Munc18-3, which is more widely expressed IL-2 activation leads to compensation of CTL and NK cytotoxicity. and is involved in Glut4 translocation (13). Stx11 is a member To understand how mutations in Munc18-2 give rise to disease, we of the syntaxin-family of SNARE proteins, comprised of an have solved the structure of human Munc18-2 at 2.6 Å resolution N-terminal peptide (N peptide) followed by an autonomously and mapped 18 point mutations. -
Syntaxin 13 Mediates Cycling of Plasma Membrane Proteins Via Tubulovesicular Recycling Endosomes Rytis Prekeris,* Judith Klumperman,‡ Yu A
Syntaxin 13 Mediates Cycling of Plasma Membrane Proteins via Tubulovesicular Recycling Endosomes Rytis Prekeris,* Judith Klumperman,‡ Yu A. Chen,* and Richard H. Scheller* *Howard Hughes Medical Institute, Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, California 94305-5428; and ‡Medical School, University of Utrecht, Institute for Biomembranes, 3584CX Utrecht, The Netherlands Abstract. Endocytosis-mediated recycling of plasma oles, where it is often found in clathrin-coated mem- membrane is a critical vesicle trafficking step important brane areas. Furthermore, anti-syntaxin 13 antibody in- in diverse biological processes. The membrane traffick- hibits transferrin receptor recycling in permeabilized ing decisions and sorting events take place in a series of PC12 cells. Immunoprecipitation of syntaxin 13 re- heterogeneous and highly dynamic organelles, the en- vealed that, in Triton X-100 extracts, syntaxin 13 is dosomes. Syntaxin 13, a recently discovered member of present in a complex(es) comprised of bSNAP, VAMP the syntaxin family, has been suggested to play a role in 2/3, and SNAP-25. This complex(es) binds exogenously mediating endosomal trafficking. To better understand added aSNAP and NSF and dissociates in the presence the function of syntaxin 13 we examined its intracellu- of ATP, but not ATPgS. These results support a role lar distribution in nonpolarized cells. By confocal im- for syntaxin 13 in membrane fusion events during the munofluorescence and electron microscopy, syntaxin recycling of plasma membrane proteins. 13 is primarily found in tubular early and recycling en- dosomes, where it colocalizes with transferrin receptor. Key words: vesicular transport • endosomes • protein Additional labeling is also present in endosomal vacu- recycling • membrane trafficking • syntaxin iological membranes are used to establish func- dermal growth factor (38, 39, 59) become highly concen- tional compartments in eucaryotic organisms. -
Asna1/TRC40 Controls B-Cell Function and Endoplasmic Reticulum Homeostasis by Ensuring Retrograde Transport
110 Diabetes Volume 65, January 2016 Stefan Norlin,1 Vishal S. Parekh,1 Peter Naredi,2 and Helena Edlund1 Asna1/TRC40 Controls b-Cell Function and Endoplasmic Reticulum Homeostasis by Ensuring Retrograde Transport Diabetes 2016;65:110–119 | DOI: 10.2337/db15-0699 Type 2 diabetes (T2D) is characterized by insulin re- and misfolded proteins accumulate within the ER, and ER sistance and b-cell failure. Insulin resistance per se, stress develops, leading to activation of the unfolded however, does not provoke overt diabetes as long as protein response (UPR). During the development of type 2 compensatory b-cell function is maintained. The in- diabetes (T2D), pancreatic b-cells initially compensate creased demand for insulin stresses the b-cell endo- for insulin resistance successfully by increasing insulin plasmic reticulum (ER) and secretory pathway, and ER biosynthesis and secretion. However, conditions that b stress is associated with -cell failure in T2D. The tail lead to sustained ER stress (i.e., prolonged and persistent recognition complex (TRC) pathway, including Asna1/ insulin resistance and/or failure to reestablish proper ER TRC40, is implicated in the maintenance of endomem- homeostasis) are implicated in the deterioration of b-cell brane trafficking and ER homeostasis. To gain insight function and the development of overt diabetes (1–3). into the role of Asna1/TRC40 in maintaining endomem- Thus, identification of key molecules and factors that en- brane homeostasis and b-cell function, we inactivated b2/2 fi ISLET STUDIES Asna1 b Asna1 sure proper membrane traf cking and ER homeostasis, in -cells of mice. We show that mice b develop hypoinsulinemia, impaired insulin secretion, and thereby -cell function and survival, is important to and glucose intolerance that rapidly progresses to overt gaining insight into the etiology of T2D.