Physarum Polycephalum
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Malaria History
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike License. Your use of this material constitutes acceptance of that license and the conditions of use of materials on this site. Copyright 2006, The Johns Hopkins University and David Sullivan. All rights reserved. Use of these materials permitted only in accordance with license rights granted. Materials provided “AS IS”; no representations or warranties provided. User assumes all responsibility for use, and all liability related thereto, and must independently review all materials for accuracy and efficacy. May contain materials owned by others. User is responsible for obtaining permissions for use from third parties as needed. Malariology Overview History, Lifecycle, Epidemiology, Pathology, and Control David Sullivan, MD Malaria History • 2700 BCE: The Nei Ching (Chinese Canon of Medicine) discussed malaria symptoms and the relationship between fevers and enlarged spleens. • 1550 BCE: The Ebers Papyrus mentions fevers, rigors, splenomegaly, and oil from Balantines tree as mosquito repellent. • 6th century BCE: Cuneiform tablets mention deadly malaria-like fevers affecting Mesopotamia. • Hippocrates from studies in Egypt was first to make connection between nearness of stagnant bodies of water and occurrence of fevers in local population. • Romans also associated marshes with fever and pioneered efforts to drain swamps. • Italian: “aria cattiva” = bad air; “mal aria” = bad air. • French: “paludisme” = rooted in swamp. Cure Before Etiology: Mid 17th Century - Three Theories • PC Garnham relates that following: An earthquake caused destruction in Loxa in which many cinchona trees collapsed and fell into small lake or pond and water became very bitter as to be almost undrinkable. Yet an Indian so thirsty with a violent fever quenched his thirst with this cinchona bark contaminated water and was better in a day or two. -
The Intestinal Protozoa
The Intestinal Protozoa A. Introduction 1. The Phylum Protozoa is classified into four major subdivisions according to the methods of locomotion and reproduction. a. The amoebae (Superclass Sarcodina, Class Rhizopodea move by means of pseudopodia and reproduce exclusively by asexual binary division. b. The flagellates (Superclass Mastigophora, Class Zoomasitgophorea) typically move by long, whiplike flagella and reproduce by binary fission. c. The ciliates (Subphylum Ciliophora, Class Ciliata) are propelled by rows of cilia that beat with a synchronized wavelike motion. d. The sporozoans (Subphylum Sporozoa) lack specialized organelles of motility but have a unique type of life cycle, alternating between sexual and asexual reproductive cycles (alternation of generations). e. Number of species - there are about 45,000 protozoan species; around 8000 are parasitic, and around 25 species are important to humans. 2. Diagnosis - must learn to differentiate between the harmless and the medically important. This is most often based upon the morphology of respective organisms. 3. Transmission - mostly person-to-person, via fecal-oral route; fecally contaminated food or water important (organisms remain viable for around 30 days in cool moist environment with few bacteria; other means of transmission include sexual, insects, animals (zoonoses). B. Structures 1. trophozoite - the motile vegetative stage; multiplies via binary fission; colonizes host. 2. cyst - the inactive, non-motile, infective stage; survives the environment due to the presence of a cyst wall. 3. nuclear structure - important in the identification of organisms and species differentiation. 4. diagnostic features a. size - helpful in identifying organisms; must have calibrated objectives on the microscope in order to measure accurately. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Experimental Listeria–Tetrahymena–Amoeba Food Chain Functioning Depends on Bacterial Virulence Traits Valentina I
Pushkareva et al. BMC Ecol (2019) 19:47 https://doi.org/10.1186/s12898-019-0265-5 BMC Ecology RESEARCH ARTICLE Open Access Experimental Listeria–Tetrahymena–Amoeba food chain functioning depends on bacterial virulence traits Valentina I. Pushkareva1, Julia I. Podlipaeva2, Andrew V. Goodkov2 and Svetlana A. Ermolaeva1,3* Abstract Background: Some pathogenic bacteria have been developing as a part of terrestrial and aquatic microbial eco- systems. Bacteria are consumed by bacteriovorous protists which are readily consumed by larger organisms. Being natural predators, protozoa are also an instrument for selection of virulence traits in bacteria. Moreover, protozoa serve as a “Trojan horse” that deliver pathogens to the human body. Here, we suggested that carnivorous amoebas feeding on smaller bacteriovorous protists might serve as “Troy” themselves when pathogens are delivered to them with their preys. A dual role might be suggested for protozoa in the development of traits required for bacterial passage along the food chain. Results: A model food chain was developed. Pathogenic bacteria L. monocytogenes or related saprophytic bacteria L. innocua constituted the base of the food chain, bacteriovorous ciliate Tetrahymena pyriformis was an intermedi- ate consumer, and carnivorous amoeba Amoeba proteus was a consumer of the highest order. The population of A. proteus demonstrated variations in behaviour depending on whether saprophytic or virulent Listeria was used to feed the intermediate consumer, T. pyriformis. Feeding of A. proteus with T. pyriformis that grazed on saprophytic bacteria caused prevalence of pseudopodia-possessing hungry amoebas. Statistically signifcant prevalence of amoebas with spherical morphology typical for fed amoebas was observed when pathogenic L. -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
Sexual Development in Plasmodium Parasites: Knowing When It’S Time to Commit
REVIEWS VECTOR-BORNE DISEASES Sexual development in Plasmodium parasites: knowing when it’s time to commit Gabrielle A. Josling1 and Manuel Llinás1–4 Abstract | Malaria is a devastating infectious disease that is caused by blood-borne apicomplexan parasites of the genus Plasmodium. These pathogens have a complex lifecycle, which includes development in the anopheline mosquito vector and in the liver and red blood cells of mammalian hosts, a process which takes days to weeks, depending on the Plasmodium species. Productive transmission between the mammalian host and the mosquito requires transitioning between asexual and sexual forms of the parasite. Blood- stage parasites replicate cyclically and are mostly asexual, although a small fraction of these convert into male and female sexual forms (gametocytes) in each reproductive cycle. Despite many years of investigation, the molecular processes that elicit sexual differentiation have remained largely unknown. In this Review, we highlight several important recent discoveries that have identified epigenetic factors and specific transcriptional regulators of gametocyte commitment and development, providing crucial insights into this obligate cellular differentiation process. Trophozoite Malaria affects almost 200 million people worldwide and viewed under the microscope, it resembles a flat disc. 1 A highly metabolically active and causes 584,000 deaths annually ; thus, developing a After the ring stage, the parasite rounds up as it enters the asexual form of the malaria better understanding of the mechanisms that drive the trophozoite stage, in which it is far more metabolically parasite that forms during development of the transmissible form of the malaria active and expresses surface antigens for cytoadhesion. the intra‑erythrocytic developmental cycle following parasite is a matter of urgency. -
Sounds Synthesis with Slime Mould of Physarum Polycephalum
Miranda, Adamatzky, Jones, Journal of Bionic Engineering 8 (2011) 107–113. Sounds Synthesis with Slime Mould of Physarum Polycephalum Eduardo R. Miranda1, Andrew Adamatzky2 and Jeff Jones2 1 Interdisciplinary Centre for Computer Music Research (ICCMR), University of Plymouth, Plymouth, PL4 8AA UK; [email protected] 2 Unconventional Computing Centre, University of the West of England, Bristol, BS16 1QY UK; [email protected] Abstract Physarum polycephalum is a huge single cell with thousands of nuclei, which behaves like a giant amoeba. During its foraging behaviour this plasmodium produces electrical activity corresponding to different physiological states. We developed a method to render sounds from such electrical activity and thus represent spatio-temporal behaviour of slime mould in a form apprehended by humans. We show to control behaviour of slime mould to shape it towards reproduction of required range of sounds. 1 Introduction Our research is concerned with the application of novel computational paradigms implemented on biological substrates in the field of computer music. Computer music has evolved in tandem with the field of Computer Science. Computers have been programmed to produce sounds as early as the beginning of the 1950’s. Nowadays, the computer is ubiquitous in many aspects of music, ranging from software for musical composition and production, to systems for distribution of music on the Internet. Therefore, it is likely that future developments in fields such as Bionic Engineering will have an impact in computer music applications. Research into novel computing paradigms in looking for new algorithms and computing architectures inspired by, or physically implemented on, chemical, biological and physical substrates (Calude et al. -
A PRELIMINARY NOTE on TETRAMITUS, a STAGE in the LIFE CYCLE of a COPROZOIC AMOEBA by MARTHA BUNTING
294 Z6OL6G Y.- M. BUNTING PROC. N. A. S. A PRELIMINARY NOTE ON TETRAMITUS, A STAGE IN THE LIFE CYCLE OF A COPROZOIC AMOEBA By MARTHA BUNTING DEPARTMENT OF ZOOLOGY, UNIVERSITY OF PENNSYLVANIA Communicated July 24, 1922 In 1920 a study of the Entamoeba of the rat was begun and in a culture on artificial medium a number of Coprozoic amoeba appeared, one of which exhibited a flagellate phase which seems to be identical with Tetramitus rostratus Perty.1 The appearance of flagellate phases in cultures of Coprozoic amoeba (Whitmore,2 etc.) as well as of soil amoeba (Kofoid,1 Wilson,4 etc.) has been recorded a number of times, but the flagellates which appeared were relatively simple in organization and very transitory in occurrence. Fur- thermore, some of the simpler flagellates have been observed (Pascher5) to lose their flagella and become amoeboid. In the case here described, however, there is a transformation of a simple amoeba into a relatively complex flagellate which multiplies for several days then returns to the amoeboid condition and becomes encysted. Tetramitus rostratus has been studied by a number of investigators since its discovery in 1852, by Perty,' yet no one has given a full account of its life history. The lack of cysts in previous accounts, mentioned by Dobell and O'Connor,6 is explained by the transformation into an amoeba before encystment. It is believed that this animal presents the extreme in transformations of this sort and serves to emphasize the close relationship between amoebae and flagellates, and the need for careful studies of life cycles, in pure cultures where possible, in investigations of coprozoic and other Protozoa. -
Culturing Slime Mold
Culturing Slime Mold Live Material Care Guide SCIENTIFIC BIO Background FAX! Plasmodial slime mold (phylum Myxomycota) lives in dark, moist environments such as under the bark of decaying logs, among mulch, or beneath decaying leaves. Slime mold classification is once again changing. They were in Protista due to their amoeboid-like properties. In the past, slime molds were considered a fungus because they produce fruiting bodies and spores used for reproduction. Slime molds are a group notable for its unwillingness to be neatly classified! Frequently bright in color and large in size (up to 30 cm in diameter), plasmodial slime molds consist of many amoeba-like cells, which form a mass of protoplasm called myxomycota. The organisms are capable of very slow, creeping movement by means of cytoplasmic streaming. During the reproductive stage, called pseudoplasmodium, slime molds tend to migrate to a well-lit area, such as the top of a log, where less moisture is present. They form into a slug-like mass and produce reproductive fruiting bodies, which contain spores. Under adverse conditions (lack of food, water, light, warmth, or pH changes), the organism dries out and forms a hardened mass called a sclerotium. These sclerotia may also grow fruiting bodies, but do not release spores into the environ- ment until conditions once again become favorable for growth. Spores are transported by wind, which results in the spreading of slime molds to new areas. Sclerotium (unfavorable conditions) Pseudoplasmodium (favorable conditions) Aggregate (plasmodial stage) Amoeba/spores Reproductive Fruiting Bodies Figure 1. Life Cycle of Slime Mold Culturing/Media Slime mold is typically cultured from sclerotia rather than from spores. -
S41598-020-68694-9.Pdf
www.nature.com/scientificreports OPEN Delayed cytokinesis generates multinuclearity and potential advantages in the amoeba Acanthamoeba castellanii Nef strain Théo Quinet1, Ascel Samba‑Louaka2, Yann Héchard2, Karine Van Doninck1 & Charles Van der Henst1,3,4,5* Multinuclearity is a widespread phenomenon across the living world, yet how it is achieved, and the potential related advantages, are not systematically understood. In this study, we investigate multinuclearity in amoebae. We observe that non‑adherent amoebae are giant multinucleate cells compared to adherent ones. The cells solve their multinuclearity by a stretchy cytokinesis process with cytosolic bridge formation when adherence resumes. After initial adhesion to a new substrate, the progeny of the multinucleate cells is more numerous than the sibling cells generated from uninucleate amoebae. Hence, multinucleate amoebae show an advantage for population growth when the number of cells is quantifed over time. Multiple nuclei per cell are observed in diferent amoeba species, and the lack of adhesion induces multinuclearity in diverse protists such as Acanthamoeba castellanii, Vermamoeba vermiformis, Naegleria gruberi and Hartmannella rhysodes. In this study, we observe that agitation induces a cytokinesis delay, which promotes multinuclearity. Hence, we propose the hypothesis that multinuclearity represents a physiological adaptation under non‑adherent conditions that can lead to biologically relevant advantages. Te canonical view of eukaryotic cells is usually illustrated by an uninucleate organization. However, in the liv- ing world, cells harbouring multiple nuclei are common. Tis multinuclearity can have diferent origins, being either generated (i) by fusion events between uninucleate cells or by (ii) uninucleate cells that replicate their DNA content without cytokinesis. -
Physarum Polycephalum - Large Stages by Aggregation of Many Small Amoeboid Cells
Overview Life cycle Physarum polycephalum is the most well- The life cycle of Physarum can be roughly di- known and in the laboratories of cell biologists vided into three phases: plasmodium, fruiting most cultivated representative of the slime body and spores. The large, network-shaped molds (myxomycetes), of which there are plasmodia contain numerous nuclei with a about 900 species. Slime molds combine char- double (= diploid) set of chromosomes, which acteristics of fungi (the formation of fruiting divide synchronously when the cell grows. For bodies) and animals (possession of motile sex growth, the plasmodia need to take up food cells), but are not directly related to either of such as protists, bacteria, fungi, lichens, plant them. Instead, they systematically belong to and animal remains. In the laboratory, the plas- the Amoebozoa, which usually contain tiny, modia can be easily fed with oatmeal. single-celled amoebae. The macroscopically visible life form of Physarum represents a gi- gantic amoeba, i.e. a single cell. This life form, known as plasmodium, contains a large num- ber of nuclei and forms a network of veins Fig. 1: Part of the yellow plasmodium of Physarum (Figs. 1-3). With the help of fluid cell plasma polycephalum with system of veins and migration flowing rhythmically in the veins, the plasmo- front. dium slowly moves. In contrast to this one gi- ant cell, other slime molds such as Dictyoste- lium discoideum (Protist of the Year 2011) form Physarum polycephalum - large stages by aggregation of many small amoeboid cells. The slime mold Fig. 3: Two approximately palm-sized slime molds in their natural habitat, here on the rotting branch of a fallen tree in Grunewald, Berlin. -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances