On Forbidden Induced Subgraphs for Unit Disk Graphs
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Disk Intersection Graphs: Models, Data Structures, and Algorithms
Disk Intersection Graphs: Models, Data Structures, and Algorithms Dissertation zur Erlangung des Doktorgrades vorgelegt am Fachbereich Mathematik und Informatik der Freien Universität Berlin von Paul Seiferth 2016 Erstgutachter: Prof. Dr. Wolfgang Mulzer Zweitgutachter: Prof. Dr. Christian Knauer Tag der Disputation: 19.08.2016 iii Abstract 2 Let P R be a set of n point sites. The unit disk graph UD(P) on P has vertex ⊂ set P and an edge between two sites p, q P if and only if p and q have Euclidean 2 distance jpqj 6 1. If we interpret P as centers of disks with diameter 1, then UD(P) is the intersection graph of these disks, i.e., two sites p and q form an edge if and only if their corresponding unit disks intersect. Two natural generalizations of unit disk graphs appear when we assign to each point p P an associated radius r > 0. The first one is 2 p the disk graph D(P), where we put an edge between p and q if and only if jpqj 6 rp +rq, meaning that the disks with centers p and q and radii rp and rq intersect. The second one yields a directed graph on P, called the transmission graph of P. We obtain it by putting a directed edge from p to q if and only if jpqj 6 rp, meaning that q lies in the disk with center p and radius rp. For disk and transmission graphs we define the radius ratio Ψ to be the ratio of the largest and the smallest radius that is assigned to a site in P. -
A Complexity Theory for Implicit Graph Representations
A Complexity Theory for Implicit Graph Representations Maurice Chandoo Leibniz Universität Hannover, Theoretical Computer Science, Appelstr. 4, 30167 Hannover, Germany [email protected] Abstract In an implicit graph representation the vertices of a graph are assigned short labels such that adjacency of two vertices can be algorithmically determined from their labels. This allows for a space-efficient representation of graph classes that have asymptotically fewer graphs than the class of all graphs such as forests or planar graphs. A fundamental question is whether every smaller graph class has such a representation. We consider how restricting the computational complexity of such representations affects what graph classes can be represented. A formal language can be seen as implicit graph representation and therefore complexity classes such as P or NP can be understood as set of graph classes. We investigate this complexity landscape and introduce complexity classes defined in terms of first order logic that capture surprisingly many of the graph classes for which an implicit representation is known. Additionally, we provide a notion of reduction between graph classes which reveals that trees and interval graphs are ‘complete’ for certain fragments of first order logic in this setting. 1998 ACM Subject Classification G.2.2 Graph Theory, F.1.3 Complexity Measures and Classes Keywords and phrases adjacency labeling schemes, complexity of graph properties We call a graph class small if it has at most 2O(n log n) graphs on n vertices. Many important graph classes such as interval graphs are small. Using adjacency matrices or lists to represent such classes is not space-efficient since this requires n2 bits (resp. -
Abstracting Abstraction in Search II: Complexity Analysis
Proceedings of the Fifth Annual Symposium on Combinatorial Search Abstracting Abstraction in Search II: Complexity Analysis Christer Backstr¨ om¨ and Peter Jonsson Department of Computer Science, Linkoping¨ University SE-581 83 Linkoping,¨ Sweden [email protected] [email protected] Abstract In our earlier publication (Backstr¨ om¨ and Jonsson 2012) we have demonstrated the usefulness of this framework in Modelling abstraction as a function from the original state various ways. We have shown that a certain combination of space to an abstract state space is a common approach in com- our transformation properties exactly captures the DPP con- binatorial search. Sometimes this is too restricted, though, cept by Zilles and Holte (2010). A related concept is that and we have previously proposed a framework using a more flexible concept of transformations between labelled graphs. of path/plan refinement without backtracking to the abstract We also proposed a number of properties to describe and clas- level. Partial solutions to capturing this concept have been sify such transformations. This framework enabled the mod- presented in the literature, for instance, the ordered mono- elling of a number of different abstraction methods in a way tonicity criterion by Knoblock, Tenenberg, and Yang (1991), that facilitated comparative analyses. It is of particular inter- the downward refinement property (DRP) by Bacchus and est that these properties can be used to capture the concept of Yang (1994), and the simulation-based approach by Bundy refinement without backtracking between levels; how to do et al. (1996). However, how to define general conditions this has been an open question for at least twenty years. -
Implicit Structures for Graph Neural Networks
Implicit Structures for Graph Neural Networks Fangda Gu Electrical Engineering and Computer Sciences University of California at Berkeley Technical Report No. UCB/EECS-2020-185 http://www2.eecs.berkeley.edu/Pubs/TechRpts/2020/EECS-2020-185.html November 23, 2020 Copyright © 2020, by the author(s). All rights reserved. Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. To copy otherwise, to republish, to post on servers or to redistribute to lists, requires prior specific permission. Acknowledgement I would like to express my most sincere gratitude to Professor Laurent El Ghaoui and Professor Somayeh Sojoudi for their support in my academic life. The helpful discussions with them on my research have guided me through the past two successful years at University of California, Berkeley. I want to thank Heng Chang and Professor Wenwu Zhu for their help in the implementation and verification of the work. I also want to thank Shirley Salanio for her strong logistical and psychological support. Implicit Structures for Graph Neural Networks by Fangda Gu Research Project Submitted to the Department of Electrical Engineering and Computer Sciences, University of California at Berkeley, in partial satisfaction of the requirements for the degree of Master of Science, Plan II. Approval for the Report and Comprehensive Examination: Committee: Professor Laurent El Ghaoui Research Advisor (Date) * * * * * * * Professor Somayeh Sojoudi Second Reader 11/19/2020 (Date) Implicit Structures for Graph Neural Networks Fangda Gu Abstract Graph Neural Networks (GNNs) are widely used deep learning models that learn meaningful representations from graph-structured data. -
Large-Scale Directed Model Checking LTL
Large-Scale Directed Model Checking LTL Stefan Edelkamp and Shahid Jabbar University of Dortmund Otto-Hahn Straße 14 {stefan.edelkamp,shahid.jabbar}@cs.uni-dortmund.de Abstract. To analyze larger models for explicit-state model checking, directed model checking applies error-guided search, external model check- ing uses secondary storage media, and distributed model checking exploits parallel exploration on multiple processors. In this paper we propose an external, distributed and directed on-the-fly model checking algorithm to check general LTL properties in the model checker SPIN. Previous attempts restricted to checking safety proper- ties. The worst-case I/O complexity is bounded by O(sort(|F||R|)/p + l · scan(|F||S|)), where S and R are the sets of visited states and transitions in the synchronized product of the B¨uchi automata for the model and the property specification, F is the number of accepting states, l is the length of the shortest counterexample, and p is the number of processors. The algorithm we propose returns minimal lasso-shaped counterexam- ples and includes refinements for property-driven exploration. 1 Introduction The core limitation to the exploration of systems are bounded main memory resources. Relying on virtual memory slows down the exploration due to excessive page faults. External algorithms [31] exploit hard disk space and organize the access to secondary memory. Originally designed for explicit graphs, external search algorithms have shown considerably good performances in the large-scale breadth-first and guided exploration of games [22, 12] and in the analysis of model checking problems [24]. Directed explicit-state model checking [13] enhances the error-reporting capa- bilities of model checkers. -
Algorithms on Geometric Graphs
M. Tech. (Computer Science) Dissertation Algorithms on Geometric Graphs A dissertation submitted in partial fulfillment of the requirements for the award of M.Tech.(Computer Science) degree By Minati De Roll No: CS0805 under the supervision of Professor Subhas C. Nandy Advanced Computing and Microelectronics Unit INDIANSTATISTICALINSTITUTE 203, Barrackpore Trunk Road Kolkata - 700 108 Acknowledgement At the end of this course, it is my pleasure to thank everyone who has helped me along the way. First of all, I want to express my sincere gratitude to my supervisor, Prof. Subhas C. Nandy, for introducing me to the world of computational geometry and giving me interesting problems. I have learnt a lot from him. For his patience, for all his advice and encouragement and for the way he helped me to think about problems with a broader perspective, I will always be grateful. I would like to thank all the professors at ISI who have made my educational life exciting and helped me to gain a better outlook on computer science. I would also like to express my gratitude to Prof. B. P. Sinha, Prof. Arijit Bishnu, Goutam K. Das, Daya Gour for interesting discussions. I would like to thank everybody at ISI for providing a wonderful atmosphere for pursuing my studies. I thank all my classmates who have made the academic and non-academic experience very delightful. Special thanks to my friends Somindu-di, Debosmita-di, Ishita, Anindita-di, Aritra-da, Butu-da, Koushik, Anisur, Soumyot- tam, Joydeep and many others who made my campus life so enjoyable. It has been great having them around at all times, good or bad. -
Shorter Implicit Representation for Planar Graphs and Bounded Treewidth Graphs
Shorter Implicit Representation for Planar Graphs and Bounded Treewidth Graphs Cyril Gavoille and Arnaud Labourel LaBRI, Universit´e de Bordeaux, France {gavoille,labourel}@labri.fr Abstract. Implicit representation of graphs is a coding of the structure of graphs using distinct labels so that adjacency between any two vertices can be decided by inspecting their labels alone. All previous implicit rep- resentations of planar graphs were based on the classical three forests de- composition technique (a.k.a. Schnyder’s trees), yielding asymptotically toa3logn-bit1 label representation where n is the number of vertices of the graph. We propose a new implicit representation of planar graphs using asymptotically 2 log n-bit labels. As a byproduct we have an explicit construction of a graph with n2+o(1) vertices containing all n-vertex pla- nar graphs as induced subgraph, the best previous size of such induced- universal graph was O(n3). More generally, for graphs excluding a fixed minor, we construct a 2logn + O(log log n) implicit representation. For treewidth-k graphs we give a log n + O(k log log(n/k)) implicit representation, improving the O(k log n) representation of Kannan, Naor and Rudich [18] (STOC ’88). Our representations for planar and treewidth-k graphs are easy to implement, all the labels can be constructed in O(n log n)time,and support constant time adjacency testing. 1 Introduction How to represent a graph in memory is a basic and fundamental data structure question. The two basic ways are adjacency matrices and adjacency lists. The latter representation is space efficient for sparse graphs, but adjacency queries require searching in the list, whereas matrices allow fast queries to the price of a super-linear space. -
Maximum Clique in Disk-Like Intersection Graphs
Maximum Clique in Disk-Like Intersection Graphs Édouard Bonnet Univ Lyon, CNRS, ENS de Lyon, Université Claude Bernard Lyon 1, LIP UMR5668, France [email protected] Nicolas Grelier Department of Computer Science, ETH Zürich [email protected] Tillmann Miltzow Utrecht University, Utrecht Netherlands [email protected] Abstract We study the complexity of Maximum Clique in intersection graphs of convex objects in the plane. On the algorithmic side, we extend the polynomial-time algorithm for unit disks [Clark ’90, Raghavan and Spinrad ’03] to translates of any fixed convex set. We also generalize the efficient polynomial-time approximation scheme (EPTAS) and subexponential algorithm for disks [Bonnet et al. ’18, Bonamy et al. ’18] to homothets of a fixed centrally symmetric convex set. The main open question on that topic is the complexity of Maximum Clique in disk graphs. It is not known whether this problem is NP-hard. We observe that, so far, all the hardness proofs for Maximum Clique in intersection graph classes I follow the same road. They show that, for every graph G of a large-enough class C, the complement of an even subdivision of G belongs to the intersection class I. Then they conclude invoking the hardness of Maximum Independent Set on the class C, and the fact that the even subdivision preserves that hardness. However there is a strong evidence that this approach cannot work for disk graphs [Bonnet et al. ’18]. We suggest a new approach, based on a problem that we dub Max Interval Permutation Avoidance, which we prove unlikely to have a subexponential-time approximation scheme. -
Linear-Time Approximation Algorithms for Unit Disk Graphs
Linear-Time Approximation Algorithms for Unit Disk Graphs Guilherme D. da Fonseca Vin´ıciusG. Pereira de S´a Celina M. H. de Figueiredo Universidade Federal do Rio de Janeiro, Brazil Abstract Numerous approximation algorithms for unit disk graphs have been proposed in the literature, exhibiting sharp trade-offs between running times and approximation ratios. We propose a method to obtain linear-time approximation algorithms for unit disk graph problems. Our method yields linear-time (4 + ")-approximations to the maximum-weight independent set and the minimum dominating set, as well as a linear-time approximation scheme for the minimum vertex cover, improving upon all known linear- or near-linear-time algorithms for these problems. 1 Introduction A unit disk graph is the intersection graph of unit disks in the plane. Unit disk graphs are often represented using the coordinates of the disk centers instead of explicit adjacency information. In this geometric setting, two vertices are adjacent if the corresponding points (the disk centers) are within Euclidean distance at most 2 from one another. Owing to their applicability in wireless networks [10, 13], numerous approximation algorithms for unit disk graphs have been proposed in the literature. Such approxima- tions are either graph-based algorithms, when they receive as input solely the adjacency representation of the graph, or geometric algorithms, when the input consists of a geo- metric representation of the graph. While the edges of a graph G(V; E), with n = V and m = E , can be obtained from the vertices' coordinates in O(n + m) time under thej j real-RAMj modelj with floor function and constant-time hashing [3], obtaining a geometric representation of a given unit disk graph is NP-hard [4]. -
Graph Fairing Convolutional Networks for Anomaly Detection
Graph Fairing Convolutional Networks for Anomaly Detection Mahsa Mesgaran and A. Ben Hamza Concordia Institute for Information Systems Engineering Concordia University, Montreal, QC, Canada Abstract class (i.e. normal class) by learning a discriminative hyperplane boundary around the normal instances. Another commonly- Graph convolution is a fundamental building block for many used anomaly detection approach is support vector data descrip- deep neural networks on graph-structured data. In this paper, tion (SVDD) [4], which basically finds the smallest possible hy- we introduce a simple, yet very effective graph convolutional persphere that contains all instances, allowing some instances to network with skip connections for semi-supervised anomaly de- be excluded as anomalies. However, these approaches rely on tection. The proposed multi-layer network architecture is theo- hand-crafted features, are unable to appropriately handle high- retically motivated by the concept of implicit fairing in geome- dimensional data, and often suffer from computational scalabil- try processing, and comprises a graph convolution module for ity issues. aggregating information from immediate node neighbors and Deep learning has recently emerged as a very powerful way a skip connection module for combining layer-wise neighbor- to hierarchically learn abstract patterns from data, and has been hood representations. In addition to capturing information from successfully applied to anomaly detection, showing promising distant graph nodes through skip connections between the net- results in comparison with shallow methods [5]. Ruff et al. [6] work’s layers, our approach exploits both the graph structure and extend the shallow one-class classification SVDD approach to node features for learning discriminative node representations. -
Approximating Maximum Diameter-Bounded Subgraph in Unit Disk Graphs
Approximating Maximum Diameter-Bounded Subgraph in Unit Disk Graphs A. Karim Abu-Affash1 Software Engineering Department, Shamoon College of Engineering Beer-Sheva 84100, Israel [email protected] Paz Carmi2 Department of Computer Science, Ben-Gurion University Beer-Sheva 84105, Israel [email protected] Anil Maheshwari3 School of Computer Science, Carleton University Ottawa, Canada [email protected] Pat Morin4 School of Computer Science, Carleton University Ottawa, Canada [email protected] Michiel Smid5 School of Computer Science, Carleton University Ottawa, Canada [email protected] Shakhar Smorodinsky6 Department of Mathematics, Ben-Gurion University Beer-Sheva 84105, Israel [email protected] Abstract We consider a well studied generalization of the maximum clique problem which is defined as follows. Given a graph G on n vertices and an integer d ≥ 1, in the maximum diameter-bounded subgraph problem (MaxDBS for short), the goal is to find a (vertex) maximum subgraph of G of diameter at most d. For d = 1, this problem is equivalent to the maximum clique problem and thus it is NP-hard to approximate it within a factor n1−, for any > 0. Moreover, it is known that, for any d ≥ 2, it is NP-hard to approximate MaxDBS within a factor n1/2−, for any > 0. In this paper we focus on MaxDBS for the class of unit disk graphs. We provide a polynomial- time constant-factor approximation algorithm for the problem. The approximation ratio of our algorithm does not depend on the diameter d. Even though the algorithm itself is simple, its analysis is rather involved. -
Approximation Algorithms for Maximum Independent Set of a Unit Disk Graph ∗ Gautam K
Information Processing Letters 115 (2015) 439–446 Contents lists available at ScienceDirect Information Processing Letters www.elsevier.com/locate/ipl Approximation algorithms for maximum independent set of a unit disk graph ∗ Gautam K. Das a, Minati De b, Sudeshna Kolay c, Subhas C. Nandy d, , Susmita Sur-Kolay d a Dept. of Mathematics, Indian Institute of Technology Guwahati, Guwahati, India b Dept. of Computer Science, The Technion—Israel Institute of Technology, Israel c The Institute of Mathematical Sciences, Chennai, India d Indian Statistical Institute, Kolkata, India a r t i c l e i n f o a b s t r a c t Article history: We propose a 2-approximation algorithm for the maximum independent set problem for a 3 2 Received 21 November 2013 unit disk graph. The time and space complexities are O (n ) and O (n ), respectively. For a Received in revised form 5 November 2014 penny graph, our proposed 2-approximation algorithm works in O (n log n) time using O (n) Accepted 6 November 2014 space. We also propose a polynomial-time approximation scheme (PTAS) for the maximum Available online 15 November 2014 independent set problem for a unit disk graph. Given an integer k > 1, it produces a Communicated by R. Uehara solution of size 1 |OPT| in O (k4nσk log k + n logn) time and O (n + k logk) space, where + 1 2 (1 k ) Keywords: ≤ 7k + OPT is the subset of disks in an optimal solution and σk 3 2. For a penny graph, the Maximum independent set 1 | | 2σk + Unit disk graph proposed PTAS produces a solution of size + 1 OPT in O (2 nk n logn) time using (1 k ) Approximation algorithms O (2σk + n) space.