Molecular Design of a Room-Temperature Maser
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Bidirectional Redox Cycling of Phenazine-1-Carboxylic Acid by Citrobacter Portucalensis MBL
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.23.395335; this version posted November 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Bidirectional redox cycling of phenazine-1-carboxylic acid by Citrobacter portucalensis MBL 2 drives increased nitrate reduction 3 4 Lev M. Tsypina and Dianne K. Newmana,b# 5 6 a Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, 7 CA, USA 8 bDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, 9 CA, USA 10 11 Running Head: C. portucalensis MBL links PCA and nitrate redox cycles 12 13 # Address correspondence to Dianne K. Newman, [email protected] 14 bioRxiv preprint doi: https://doi.org/10.1101/2020.11.23.395335; this version posted November 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 15 ABSTRACT 16 Phenazines are secreted metabolites that microbes use in diverse ways, from quorum sensing to 17 antimicrobial warfare to energy conservation. Phenazines are able to contribute to these activities 18 due to their redox activity. The physiological consequences of cellular phenazine reduction have 19 been extensively studied, but the counterpart phenazine oxidation has been largely overlooked. -
A Stable and High Charge Mobility Organic Semiconductor with Densely Packed Crystal Structure Hong Meng,* Fangping Sun, Marc B
Published on Web 07/04/2006 2,6-Bis[2-(4-pentylphenyl)vinyl]anthracene: A Stable and High Charge Mobility Organic Semiconductor with Densely Packed Crystal Structure Hong Meng,* Fangping Sun, Marc B. Goldfinger, Feng Gao, David J. Londono, Will J. Marshal, Greg S. Blackman, Kerwin D. Dobbs, and Dalen E. Keys Central Research and DeVelopment, Experimental Station, E. I. DuPont Company, Wilmington, Delaware 19880-0328 Received April 18, 2006; E-mail: [email protected] Interest in organic thin film transistors (OTFTs) and their use in Scheme 1. One-Step Synthesis of DPPVAnt various technological applications has grown significantly in recent years.1,2 To realize the full potential of these applications, it is necessary to identify conjugated semiconductors with high mobility and robust environmental stability. Organic oligomers investigated to date include p-type, n-type, and p/n-type bipolar semiconduc- tors.3,4 So far, the highest charge carrier mobility in thin film transistors has been observed with pentacene, which has been used as a benchmark p-type semiconductor material with a charge mobility over 1.0 cm2/V‚s, as reported by several labs.5 However, the poor stability and reproducibility of pentacene-based OTFTs may limit pentacene’s commercial potential. Recently, Anthony’s large band gap of the compound is consistent with the greater group reported a series of solution processible pentacene and stability of DPPVAnt relative to pentacene.11 The stability of anthradithioene derivatives with silylethynyl-substituted structures.6 DPPVAnt was further confirmed by studying its electrochemical The stability and the charge mobility have been improved relative behavior. -
(12) United States Patent (10) Patent No.: US 6,242,602 B1 Giri Et Al
USOO62426O2B1 (12) United States Patent (10) Patent No.: US 6,242,602 B1 Giri et al. (45) Date of Patent: Jun. 5, 2001 (54) ONE POTSYNTHESIS OF G. F. Bettinetti et al., “Synthesis of 5, 10-Dialkyl-5, 5,10-DIHYDROPHENAZINE COMPOUNDS 10-dihydrophenazines”, Synthesis, Nov. 1976, pp. 748-749. AND 5,10-SUBSTITUTED DHYDROPHENAZINES B. M. Mikhailov et al., “Metal Compounds of Phenazine and Their Transformations', 1950, Chemical Abstracts, vol. 44, (75) Inventors: Punam Giri; Harlan J. Byker; Kelvin pp. 9452–9453. L. Baumann, all of Holland, MI (US) Axel Kistenmacher et al., “Synthesis of New Soluble Triph (73) Assignee: Gentex Corporation, Zeeland, MI (US) enodithiazines and Investigation of Their Donor Properties”, Chem. Ber, 1992, 125, pp. 1495–1500. (*) Notice: Subject to any disclaimer, the term of this Akira Sugimoto et al., “Preparation and Properties of Elec patent is extended or adjusted under 35 tron Donor Acceptor Complexes of the Compounds Having U.S.C. 154(b) by 0 days. Capto-Dative Substituents', Mar.-Apr. 1989, vol. 26, pp. (21) Appl. No.: 09/280,396 435-438. (22) Filed: Mar. 29, 1999 Primary Examiner Richard L. Raymond (51) Int. Cl." ....................... C07D 241/46; CO7D 241/48 ASSistant Examiner Ben Schroeder (52) U.S. Cl. ............................................. 544/347; 544/347 (74) Attorney, Agent, or Firm-Brian J. Rees; Factor & (58) Field of Search ............................................... 544/347 Partners, LLC (56) References Cited (57) ABSTRACT U.S. PATENT DOCUMENTS Dihydrophenazines and bis(dihydrophenazines) are pre 2,292,808 8/1942 Waterman et al. .................. 260/267 pared in high yield under commercially viable reaction 2,332,179 10/1943 Soule .................................. -
Alumina Sulfuric Acid (ASA)
Reviews and Accounts ARKIVOC 2015 (i) 70-96 Alumina sulfuric acid (ASA), tungstate sulfuric acid (TSA), molybdate sulfuric acid (MSA) and xanthan sulfuric acid (XSA) as solid and heterogeneous catalysts in green organic synthesis: a review Rajesh H. Vekariya and Hitesh D. Patel * Department of Chemistry, School of Sciences, Gujarat University, Ahmedabad, Gujarat, India E-mail: [email protected] DOI: http://dx.doi.org/10.3998/ark.5550190.p008.894 Abstract In this comprehensive review, we report on the sulfonic acid functionalized solid acids such as alumina sulfuric acid (ASA), tungstate sulfuric acid (TSA), molybdate sulfuric acid (MSA) and xanthan sulfuric acid (XSA) as green and heterogeneous catalysts in a wide range of organic transformations. Recently, the use of sulfonic acid functionalized solid acids as catalyst in organic synthesis has become an efficient and green strategy for the selective construction of organic motifs. The sustainable advantage of sulfonic acid functionalized solid acids is that it can be recovered and reused several times without loss of their efficiency. In this review, we attempt to give an overview of the use of ASA, TSA, MSA, XSA as catalysts in the synthesis of various organic compounds having industrial as well as pharmaceutical applications. Keywords: Alumina sulfuric acid, tungstate sulfuric acid, molybdate sulfuric acid, xanthan sulfuric acid, heterogeneous catalysts, solid acid catalyst Table of Contents 1. Introduction 2. Alumina Sulfuric Acid (ASA) 2.1. Synthesis of benzimidazoles and quinoxalines 2.2. Nitration of aromatic compounds 2.3. Synthesis of 2,5-disubstituted 1,3,4-oxadiazoles 2.4. Chemoselective dithioacetalization and oxathioacetalization 2.5. -
Temperature-Induced Oligomerization of Polycyclic Aromatic Hydrocarbons
www.nature.com/scientificreports OPEN Temperature-induced oligomerization of polycyclic aromatic hydrocarbons at ambient Received: 7 June 2017 Accepted: 10 July 2017 and high pressures Published: xx xx xxxx Artem D. Chanyshev 1,2, Konstantin D. Litasov1,2, Yoshihiro Furukawa3, Konstantin A. Kokh1,2 & Anton F. Shatskiy1,2 Temperature-induced oligomerization of polycyclic aromatic hydrocarbons (PAHs) was found at 500–773 K and ambient and high (3.5 GPa) pressures. The most intensive oligomerization at 1 bar and 3.5 GPa occurs at 740–823 K. PAH carbonization at high pressure is the fnal stage of oligomerization and occurs as a result of sequential oligomerization and polymerization of the starting material, caused by overlapping of π-orbitals, a decrease of intermolecular distances, and fnally the dehydrogenation and polycondensation of benzene rings. Being important for building blocks of life, PAHs and their oligomers can be formed in the interior of the terrestrial planets with radii less than 2270 km. High-pressure transformations of polycyclic aromatic hydrocarbons (PAHs) and benzene become extremely important due to wide applications for example in graphene- and graphene-based nanotechnology1–3, synthesis of organic superconductors4, 5, petroleum geoscience, origin of organic molecules in Universe and origin of life. In particular, PAHs were found in many space objects: meteorites6–8, cometary comae9, interstellar clouds and planetary nebulas10–12. Although the prevalent hypothesis for the formation of these PAHs is irradiation-driven polymerization of smaller hydrocarbons13, alternative explanation could be shock fragmentation of carbonaceous solid material11. PAH-bearing carbonaceous material could contribute to the delivery of extraterrestrial organic materials to the prebiotic Earth during the period of heavy bombardment of the inner Solar System from 4.5 to 3.8 Ga ago14–16. -
Fluorescens 2-79 (NRRL B-15132) PETER G
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Dec. 1987, p. 1967-1971 Vol. 31, No. 12 0066-4804/87/121967-05$02.00/0 Copyright © 1987, American Society for Microbiology Revised Structure for the Phenazine Antibiotic from Pseudomonas fluorescens 2-79 (NRRL B-15132) PETER G. BRISBANE,'* LESLIE J. JANIK,1 MAX E. TATE,2 AND RICHARD F. 0. WARREN2 Division of Soils, Commonwealth Scientific and Industrial Research Organisation,' and Department ofAgricultural Biochemistry, Waite Agricultural Research Institute,2 Glen Osmond, South Australia 5064, Australia Received 24 February 1987/Accepted 21 September 1987 A phenazine antibiotic (mp, 243 to 244°C), isolated in a yield of 134 ,ug/ml from cultures of Pseudomonas fluorescens 2-79 (NRRL B-15132), was indistinguishable in all of its measured physicochemical (melting point, UV and infrared spectra, and gas chromatography-mass spectrometry data) and biological properties from synthetic phenazine-1-carboxylic acid. Gurusiddaiah et al. (S. Gurusiddaiah, D. M. Weller, A. Sarkar, and R. J. Cook, Antimicrob. Agents Chemother. 29:488-495, 1986) attributed a dimeric phenazine structure to an antibiotic with demonstrably similar properties obtained from the same bacterial strain. Direct comparison of the physicochemical properties of the authentic antibiotic obtained from D. M. Weller with synthetic phenazine-1-carboxylic acid and with the natural product from the present study established that all three samples were indistinguishable within the experimental error of each method. No evidence to support the existence of a biologically active dimeric species was obtained. Phenazine-1-carboxylic acid has a pKa of 4.24 ± 0.01 (25°C; I = 0.09), and its carboxylate anion shows no detectable antimicrobial activity compared with the active uncharged carboxylic acid species. -
Enrichment, Isolation and Characterization of Phenazine-1-Carboxylic Acid (PCA)-Degrading Bacteria Under Aerobic and Anaerobic Conditions
Enrichment, isolation and characterization of phenazine-1-carboxylic acid (PCA)-degrading bacteria under aerobic and anaerobic conditions Miaomiao Zhang A thesis in fulfilment of the requirements for the degree of Doctor of Philosophy School of Civil and Environmental Engineering Faculty of Engineering September, 2018 THE UNIVERSITY OF NEW SOUTH WALES Thesis/Dissertation Sheet Surname or Family name: ZHANG First name: Miaomiao Other name/s: Abbreviation for degree as given in the University calendar: PhD School: Civil and Environmental Engineering Faculty: Engineering Title: Enrichment, isolation and characterization of phenazine-1- carboxylic acid (PCA)-degrading bacteria under aerobic and anaerobic conditions Abstract Phenazines are a large class of nitrogen-containing aromatic heterocyclic compounds produced and secreted by bacteria from phylogenetically diverse taxa under aerobic and anaerobic conditions. Phenazine-1-carboxylic acid (PCA) is regarded as a ‘core’ phenazine because it is transformed to other phenazine derivatives. Due to their important roles in ecological fitness, biocontrol of plant pathogens, infection in cystic fibrosis and potential in anticancer treatments, understanding the fate of phenazine compounds is prudent. Only seven bacterial species are known to degrade phenazines and all of them are aerobic. Hence, the aim of this study is to enrich, isolate and characterize additional bacteria with the ability to degrade phenazines aerobically and anaerobically. In this study, the isolation of a PCA-degrading Rhodanobacter sp. PCA2 belonging to Grammaproteobacteria is reported. Characterization studies revealed that strain PCA2 is also capable of transforming other phenazines including phenazine, pyocyanin and 1-hydroxyphenazine. The sequencing, annotation and analysis of the genome of strain PCA2 revealed that genes (ubiD and the homolog of the MFORT_16269 gene) involved in PCA degradation were plasmid borne. -
Orbital Alignment and Morphology of Pentacene Deposited on Au(111) and Sns2 Studied Using Photoemission Spectroscopy
J. Phys. Chem. B 2003, 107, 2253-2261 2253 Orbital Alignment and Morphology of Pentacene Deposited on Au(111) and SnS2 Studied Using Photoemission Spectroscopy P. G. Schroeder, C. B. France, J. B. Park, and B. A. Parkinson* Department of Chemistry, Colorado State UniVersity, Fort Collins, Colorado 80523 ReceiVed: March 21, 2002; In Final Form: September 30, 2002 The energy level alignment at the pentacene/Au(111) and pentacene/SnS2 interfaces was determined using in situ thin film deposition in combination with X-ray and ultraviolet photoemission spectroscopy (UPS). The organic thin films were grown by vapor deposition in multiple steps and then sequentially characterized in situ after each growth step. The pentacene/Au(111) interface is an ohmic contact that yielded a strong (0.95 eV) interfacial dipole barrier. The vacuum-cleaved SnS2 single crystal substrates provided clean, atomically flat and chemically inert surfaces, allowing for the investigation of the core level energy shifts and interface dipoles without interference from chemical reactions or effects of the substrate morphology. Low-intensity X-ray photoemission work function measurements enabled the detection of the overlayer thickness-dependent onset of charging in the UPS measurements. This allowed for precise determination of the position of the highest occupied molecular orbital of the organic molecules at the investigated interfaces. Differences in the orientation of the pentacene molecules on the two substrates were proposed based on analysis of the UP spectra, scanning -
A Facile Synthesis Procedure for Sulfonated Aniline Oligomers with Distinct Microstructures
materials Article A Facile Synthesis Procedure for Sulfonated Aniline Oligomers with Distinct Microstructures Ramesh Karunagaran 1, Campbell Coghlan 2, Diana Tran 1 , Tran Thanh Tung 1 , Alexandre Burgun 2, Christian Doonan 2 and Dusan Losic 1,* 1 School of Chemical Engineering, University of Adelaide, Adelaide, SA 5005, Australia; [email protected] (R.K.); [email protected] (D.T.); [email protected] (T.T.T.) 2 School of Chemistry, University of Adelaide, Adelaide, SA 5005, Australia; [email protected] (C.C.); [email protected] (A.B.); [email protected] (C.D.) * Correspondence: [email protected]; Tel.: +61-8-8013-4648 Received: 28 August 2018; Accepted: 15 September 2018; Published: 18 September 2018 Abstract: Well-defined sulfonated aniline oligomer (SAO) microstructures with rod and flake morphologies were successfully synthesized using an aniline and oxidant with a molar ratio of 10:1 in ethanol and acidic conditions (pH 4.8). The synthesized oligomers showed excellent dispersibility and assembled as well-defined structures in contrast to the shapeless aggregated material produced in a water medium. The synergistic effects among the monomer concentration, oxidant concentration, pH, and reaction medium are shown to be controlling parameters to generate SAO microstructures with distinct morphologies, whether micro sheets or micro rods. Keywords: polyaniline; sulfonated polyaniline; microstructures; phenazine; pH 1. Introduction Polyaniline (PANI) emerged as the first conducting polymer whose electronic properties can be altered by protonation and charge-transfer doping [1,2]. Although PANI was initially synthesized in the 19th century, extensive research began after Epstein et al. -
Binding of Polycyclic Aromatic Hydrocarbons to Polyadenylic Acid A
Proceeding8 of the National Academy of Science8 Vol. 67, No. 3, pp: 1337-1344, November 1970 Binding of Polycyclic Aromatic Hydrocarbons to Polyadenylic Acid A. Morrie Craig and I. Isenberg DEPARTMENT OF BIOCHEMISTRY AND BIOPHYSICS, OREGON STATE UNIVERSITY, CORVALLIS, OREGON 97331 Communicated by Norman Davidson, August 13, 1970 Abstract. A number of polycyclic aromatic hydrocarbons bind. to the double- stranded, acid form of polyadenylic acid (poly A). Model building shows that these hydrocarbons may intercalate in the helix, and be well protected from con- tact with the aqueous medium. Hydrocarbons that are too large to be so pro- tected are found not to bind. A size criterion for the binding of hydrocarbons to poly A therefore exists. This criterion differs from one that was previously found for DNA. The size criteria for DNA and poly A, together, serve as strong evidence for the intercalation model for hydrocarbon complexes. Model-building experiments show that only a small portion of the hydro- carbon need extend into the medium to prevent binding. This finding implies that in two cases (1,2,5,6-dibenzanthracene - poly A and 3,4-benzpyrene DNA) the structure of the complex is almost completely determined by the size criterion alone. It is now established'-" that a group of polycyclic aromatic hydrocarbons will complex to DNA. An intercalation model of these complexes, proposed by Boyland and Green' and Liquori et al.,2 has been central to all subsequent dis- cussions of hydrocarbon-DNA interaction. Although an intercalation model has appeared reasonable, compelling evidence in its behalf has been lacking. -
PROVISIONAL PEER-REVIEWED TOXICITY VALUES for O-PHENYLENEDIAMINE (CASRN 95-54-5)
EPA/690/R-16/007F l Final 09-27-2016 Provisional Peer-Reviewed Toxicity Values for o-Phenylenediamine (CASRN 95-54-5) Superfund Health Risk Technical Support Center National Center for Environmental Assessment Office of Research and Development U.S. Environmental Protection Agency Cincinnati, OH 45268 AUTHORS, CONTRIBUTORS, AND REVIEWERS CHEMICAL MANAGERS Elizabeth Owens, PhD National Center for Environmental Assessment, Cincinnati, OH Letitia Wong, PhD Oak Ridge Institute for Science and Education Research Participation Program National Center for Environmental Assessment, Cincinnati, OH DRAFT DOCUMENT PREPARED BY SRC, Inc. 7502 Round Pond Road North Syracuse, NY 13212 PRIMARY INTERNAL REVIEWER Suryanarayana Vulimiri, PhD National Center for Environmental Assessment, Research Triangle Park, NC This document was externally peer reviewed under contract to: Eastern Research Group, Inc. 110 Hartwell Avenue Lexington, MA 02421-3136 Questions regarding the contents of this PPRTV assessment should be directed to the EPA Office of Research and Development’s National Center for Environmental Assessment, Superfund Health Risk Technical Support Center (513-569-7300). ii o-Phenylenediamiamine TABLE OF CONTENTS COMMONLY USED ABBREVIATIONS AND ACRONYMS .................................................. iv BACKGROUND .............................................................................................................................1 DISCLAIMERS ...............................................................................................................................1 -
Polycyclic Aromatic Hydrocarbons As Model Cases for Structural and Optical Studies R
Special Issue: Review Commentary Received: 24 August 2009, Revised: 2 October 2009, Accepted: 13 October 2009, Published online in Wiley InterScience: 3 February 2010 (www.interscience.wiley.com) DOI 10.1002/poc.1644 Forever young: polycyclic aromatic hydrocarbons as model cases for structural and optical studies R. Riegera and K. Mu¨ llena* Polycyclic aromatic hydrocarbons (PAHs) are popular research subjects due to their high stability, their rigid planar structure, and their characteristic optical spectra. The recent discovery of graphene, which can be regarded as giant PAH, has further stimulated the interest in this area. For this reason, the relationship between the geometric and electronic structure and the optical spectra of PAHs are reviewed, pointing out the versatile properties of this class of molecules. Extremely stable fully-benzenoid PAHs with high optical gaps are encountered on the one side and the very reactive acenes with low optical gaps on the other side. A huge range of molecular sizes is covered from the simplest case benzene with its six carbon atoms up to disks containing as much as 96 carbon atoms. Furthermore, the impact of non-planarity is discussed as model cases for the highly important fullerenes and carbon nanotubes. The detailed analysis of the electronic structure of PAHs is very important with regard to their application as fluorescent dyes or organic semiconductors. The presented research results shall encourage developments of new PAH structures to exploit novel materials properties. Copyright ß 2010 John Wiley & Sons, Ltd. Keywords: aromaticity; dyes; photophysics; polycyclic aromatic hydrocarbons; UV/vis INTRODUCTION dramatically different optical and chemical properties are observed.