plants Article Temporal Variation in Community Composition of Root Associated Endophytic Fungi and Carbon and Nitrogen Stable Isotope Abundance in Two Bletilla Species (Orchidaceae) Xinhua Zeng 1, Haixin Diao 1, Ziyi Ni 1, Li Shao 1, Kai Jiang 1 , Chao Hu 1, Qingjun Huang 2 and Weichang Huang 1,3,* 1 Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Chenshan Botanical Garden, Shanghai 201620, China;
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[email protected] Abstract: Mycorrhizae are an important energy source for orchids that may replace or supplement photosynthesis. Most mature orchids rely on mycorrhizae throughout their life cycles. However, little is known about temporal variation in root endophytic fungal diversity and their trophic functions throughout whole growth periods of the orchids. In this study, the community composition of root endophytic fungi and trophic relationships between root endophytic fungi and orchids were investigated in Bletilla striata and B. ochracea at different phenological stages using stable isotope natural abundance analysis combined with molecular identification analysis. We identified 467 OTUs assigned to root-associated fungal endophytes, which belonged to 25 orders in 10 phyla. Most of these OTUs were assigned to saprotroph (143 OTUs), pathotroph-saprotroph (63 OTUs) and pathotroph- saprotroph-symbiotroph (18 OTUs) using FunGuild database. Among these OTUs, about 54 OTUs Citation: Zeng, X.; Diao, H.; Ni, Z.; could be considered as putative species of orchid mycorrhizal fungi (OMF).