bioRxiv preprint doi: https://doi.org/10.1101/2020.05.12.070425; this version posted May 12, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 High dimensional single-cell analysis reveals iNKT cell developmental trajectories and 2 effector fate decision 3 4 Thomas Baranek1,2,9, Kevin Lebrigand3, Carolina de Amat Herbozo4, Loïc Gonzalez1,2, Gemma 5 Bogard1,2, Céline Dietrich5, Virginie Magnone3, Chloé Boisseau1,2, Youenn Jouan1,2,6, François 6 Trottein7, Mustapha Si-Tahar1,2, Maria Leite-de-Moraes5, Thierry Mallevaey4,8, Christophe 7 Paget1,2,9,10 8 9 1INSERM, Centre d’Etude des Pathologies Respiratoires (CEPR), UMR 1100, Tours, France. 10 2Université de Tours, Faculté de Médecine de Tours, France. 11 3Université Côte d'Azur, CNRS, IPMC, Sophia-Antipolis, France. 12 4Department of Immunology, University of Toronto, Toronto, Ontario M5S 1A8, Canada. 13 5Université de Paris, Paris, France; Laboratory of Immunoregulation and Immunopathology, 14 INEM (Institut Necker-Enfants Malades), CNRS UMR8253 and INSERM UMR1151, Paris, 15 France. 16 6Service de Médecine Intensive et Réanimation, Centre Hospitalier Régional Universitaire, 17 Tours, France. 18 7Centre d’Infection et d’Immunité de Lille, Inserm U1019, CNRS UMR 9017, University of 19 Lille, CHU Lille- Institut Pasteur de Lille, 59000 Lille, France. 20 8Institute of Biomaterials & Biomedical Engineering, Toronto, Ontario M5S 1A8, Canada. 21 9Correspondance:
[email protected] or
[email protected] 22 10Lead contact 23 24 Keywords: iNKT cells; single cell RNA-sequencing; thymus; developmental program; 25 transcriptome; FHL2.