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A Molecular Phylogeny of Equatorial African Lacertidae, with the Description of a New Genus and Species from Eastern Democratic Republic of the Congo
Zoological Journal of the Linnean Society, 2011, 163, 913–942. With 7 figures A molecular phylogeny of Equatorial African Lacertidae, with the description of a new genus and species from eastern Democratic Republic of the Congo ELI GREENBAUM1*, CESAR O. VILLANUEVA1, CHIFUNDERA KUSAMBA2, MWENEBATU M. ARISTOTE3 and WILLIAM R. BRANCH4,5 1Department of Biological Sciences, University of Texas at El Paso, 500 West University Avenue, El Paso, TX 79968, USA 2Laboratoire d’Herpétologie, Département de Biologie, Centre de Recherche en Sciences Naturelles, Lwiro, République Démocratique du Congo 3Institut Superieur d’Ecologie pour la Conservation de la Nature, Katana Campus, Sud Kivu, République Démocratique du Congo 4Bayworld, P.O. Box 13147, Humewood 6013, South Africa 5Research Associate, Department of Zoology, Nelson Mandela Metropolitan University, Port Elizabeth, South Africa Received 25 July 2010; revised 21 November 2010; accepted for publication 18 January 2011 Currently, four species of the lacertid lizard genus Adolfus are known from Central and East Africa. We sequenced up to 2825 bp of two mitochondrial [16S and cytochrome b (cyt b)] and two nuclear [(c-mos (oocyte maturation factor) and RAG1 (recombination activating gene 1)] genes from 41 samples of Adolfus (representing every species), two species each of Gastropholis and Holaspis, and in separate analyses combined these data with GenBank sequences of all other Eremiadini genera and four Lacertini outgroups. Data from DNA sequences were analysed with maximum parsimony (PAUP), maximum-likelihood (RAxML) and Bayesian inference (MrBayes) criteria. Results demonstrated that Adolfus is not monophyletic: Adolfus africanus (type species), Adolfus alleni, and Adolfus jacksoni are sister taxa, whereas Adolfus vauereselli and a new species from the Itombwe Plateau of Democratic Republic of the Congo are in a separate lineage. -
Preliminary Analysis of Correlated Evolution of Morphology and Ecological Diversification in Lacertid Lizards
Butll. Soc. Cat. Herp., 19 (2011) Preliminary analysis of correlated evolution of morphology and ecological diversification in lacertid lizards Fèlix Amat Orriols Àrea d'Herpetologia, Museu de Granollers-Ciències Naturals. Francesc Macià 51. 08402 Granollers. Catalonia. Spain. [email protected] Resum S'ha investigat la diversitat morfològica en 129 espècies de lacèrtids i la seva relació amb l'ecologia, per mitjà de mètodes comparatius, utilitzant set variables morfomètriques. La mida corporal és la variable més important, determinant un gradient entre espècies de petita i gran mida independentment evolucionades al llarg de la filogènia dels lacèrtids. Aquesta variable està forta i positivament correlacionada amb les altres, emmascarant els patrons de diversitat morfològica. Anàlisis multivariants en les variables ajustades a la mida corporal mostren una covariació negativa entre les mides relatives de la cua i les extremitats. Remarcablement, les espècies arborícoles i semiarborícoles (Takydromus i el clade africà equatorial) han aparegut dues vegades independentment durant l'evolució dels lacèrtids i es caracteritzen per cues extremadament llargues i extremitats anteriors relativament llargues en comparació a les posteriors. El llangardaix arborícola i planador Holaspis, amb la seva cua curta, constitueix l’única excepció. Un altre cas de convergència ha estat trobat en algunes espècies que es mouen dins de vegetació densa o herba (Tropidosaura, Lacerta agilis, Takydromus amurensis o Zootoca) que presenten cues llargues i extremitats curtes. Al contrari, les especies que viuen en deserts, estepes o matollars amb escassa vegetació aïllada dins grans espais oberts han desenvolupat extremitats posteriors llargues i anteriors curtes per tal d'assolir elevades velocitats i maniobrabilitat. Aquest és el cas especialment de Acanthodactylus i Eremias Abstract Morphologic diversity was studied in 129 species of lacertid lizards and their relationship with ecology by means of comparative analysis on seven linear morphometric measurements. -
Eli Greenbaum, Ph.D
ELI GREENBAUM, PH.D. Curriculum Vitae PRESENT ADDRESS University of Texas at El Paso Cell: (785) 393-3583 Dept. of Biological Sciences Office: (915) 747-5553 500 West University Ave. Lab: (915) 747-5645 El Paso, TX 79968* FAX: (915) 747-5808 *zip code 79902 for FEDEX deliveries E-mail: [email protected] WEBSITES Homepage: http://eligreenbaum.iss.utep.edu/default.htm Blog from 2014: http://greenbaum2014.at.utep.edu/category/fieldwork/2014-expedition/ Blog from 2013: http://greenbaum.at.utep.edu/index.php/2013-expedition ACADEMIC POSITIONS 2013–present. Associate Professor, Dept. of Biological Sciences, University of Texas at El Paso. 2008–2012. Assistant Professor, Dept. of Biological Sciences, University of Texas at El Paso. 2006–2008. Postdoctoral Research Fellow, Dept. of Biology, Villanova University, Villanova, PA. EDUCATION 2006. Ph.D. (Ecology and Evolutionary Biology). The University of Kansas, Lawrence. Oral exam: 4 November 2002. Dissertation title: Molecular systematics of New World microhyline frogs, with an emphasis on the Middle American genus Hypopachus. Dissertation defense: 25 January 2006 (defended with honors). Advisor: Dr. Linda Trueb. 1998. M.S. (Biology). University of Louisiana at Monroe, Monroe. Thesis title: Sexual differentiation in the spiny softshell turtle (Apalone spinifera). Advisor: Dr. John L. Carr. 1996. B.S. (Biological Sciences). Binghamton University, Binghamton, New York. 1992. High School Diploma. City Honors High School, Buffalo, New York. PENDING GRANTS 2014. Institute for Museum and Library Services, Museums for America Program, $150,000. Natural History Collection Stewardship for the 21st Century at the University of Texas at El Paso. PI. Resubmission. 2015. NSF Biodiversity: Discovery & Analysis Program. -
A Phylogeny of the European Lizard Genus Algyroides (Reptilia: Lacertidae) Based on DNA Sequences, with Comments on the Evolution of the Group
J. Zool., Lond. (1999) 249,49±60 # 1999 The Zoological Society of London Printed in the United Kingdom A phylogeny of the European lizard genus Algyroides (Reptilia: Lacertidae) based on DNA sequences, with comments on the evolution of the group D. James Harris, E. Nicholas Arnold* and Richard H. Thomas Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, U.K. (Accepted 19 November 1998) Abstract The four species of Algyroides Bibron & Bory, 1833 form part of the relatively plesiomorphic Palaearctic clade of lacertids comprising Lacerta and its allies. An estimate of phylogeny based on DNA sequence from parts of the 12S and 16S rRNA mitochondrial genes con®rms the monophyly of the genus already suggested by several morphological features. The molecular data also indicates that relationships within the clade are: (A. nigropunctatus (A. moreoticus (A. ®tzingeri, A. marchi))); this agrees with an estimate of phylogeny based on morphology that assumes the taxon ancestral to Alygroides was relatively robust in body form, and not strongly adapted to using crevices. Initial morphological evolution within Algyroides appears to involve adaptation to crypsis in woodland habitats. The most plesiomorphic form (A. nigropunctatus) is likely to have originally climbed extensively on tree boles and branches and there may have been two subsequent independent shifts to increased use of litter and vegetation matrices with related anatomical changes (A. moreoticus, A. ®tzingeri), and one to increased use of crevices (A. marchi). Some members of Algyroides are strikingly similar in super®cial morphology to particular species of the equatorial African genus Adolfus. This resemblance results from a combination of many shared primitive features plus a few independently acquired derived ones that are likely to give performance advantage in the relatively similar structural niches that these forms occupy. -
The Vertebrate Biodiversity and Forest Condition of the North Pare Mountains
TFCG Technical Paper 17 THE VERTEBRATE BIODIVERSITY AND FOREST CONDITION OF THE NORTH PARE MOUNTAINS By N. Doggart, C. Leonard, A. Perkin, M. Menegon and F. Rovero Dar es Salaam June 2008 © Tanzania Forest Conservation Group Cover photographs by Michele Menegon. From left to right. View of North Pare Mountains. Forest scene. Hyperolius glandicolor and Impatiens sp. Suggested citations: Whole report Doggart, N., C. Leonard, A. Perkin, M. Menegon and F. Rovero (2008). The vertebrate biodiversity and forest condition of the North Pare Mountains. TFCG Technical Paper No 17. DSM, Tz. 1 - 79 pp. Sections with Report: (example using section 3) Menegon, M., (2008). Reptiles and Amphibians. In: Doggart, N., C. Leonard, A. Perkin, M. Menegon and F. Rovero (2008). Report on a survey of the vertebrate biodiversity and forest status of the North Pare Mountains. TFCG Technical Paper No 17. DSM, Tz. 1 - 79 pp. 2 EXECUTIVE SUMMARY The North Pare Mountains lie at the northern-most end of the Eastern Arc Mountains in Tanzania, just 30 kilometres east of Mount Kilimanjaro. Relative to other Eastern Arc Mountains, the North Pare Mountains are considered to be a low conservation priority due to the paucity of endemic species (Burgess et al. 2007; Burgess et al. 1998). The North Pare Mountains have also been subject to far less biodiversity research than some other Eastern Arc Mountain blocks such as the Udzungwas and East Usambaras. The correlation between research effort and documented biodiversity values has been demonstrated in other parts of the Eastern Arc such as the Rubehos (Doggart et al. 2006) and Ngurus (Doggart and Loserian 2007). -
The Relationship of Herpetofaunal
Georgia Southern University Digital Commons@Georgia Southern Electronic Theses and Dissertations Graduate Studies, Jack N. Averitt College of Spring 2009 The Relationship of Herpetofaunal Community Composition to an Elephant (Loxodonta Africana) Modified Savanna oodlandW of Northern Tanzania, and Bioassays with African Elephants Nabil A. Nasseri Follow this and additional works at: https://digitalcommons.georgiasouthern.edu/etd Recommended Citation Nasseri, Nabil A., "The Relationship of Herpetofaunal Community Composition to an Elephant (Loxodonta Africana) Modified Savanna oodlandW of Northern Tanzania, and Bioassays with African Elephants" (2009). Electronic Theses and Dissertations. 763. https://digitalcommons.georgiasouthern.edu/etd/763 This thesis (open access) is brought to you for free and open access by the Graduate Studies, Jack N. Averitt College of at Digital Commons@Georgia Southern. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons@Georgia Southern. For more information, please contact [email protected]. THE RELATIONSHIP OF HERPETOFAUNAL COMMUNITY COMPOSITION TO AN ELEPHANT ( LOXODONTA AFRICANA ) MODIFIED SAVANNA WOODLAND OF NORTHERN TANZANIA, AND BIOASSAYS WITH AFRICAN ELEPHANTS by NABIL A. NASSERI (Under the Direction of Bruce A. Schulte) ABSTRACT Herpetofauna diversity and richness were compared in areas that varied in the degree of elephant impact on the woody vegetation ( Acacia spp.). The study was conducted at Ndarakwai Ranch in northeastern Tanzania. Elephants moving between three National Parks in Kenya and Tanzania visit this property. From August 2007 to March 2008, we erected drift fences and pitfall traps to sample herpetofaunal community and examined species richness and diversity within the damaged areas and in an exclusion plot. -
Systematics of Collared Snakes and Burrowing Asps (Aparallactinae
University of Texas at El Paso DigitalCommons@UTEP Open Access Theses & Dissertations 2017-01-01 Systematics Of Collared Snakes And Burrowing Asps (aparallactinae And Atractaspidinae) (squamata: Lamprophiidae) Francisco Portillo University of Texas at El Paso, [email protected] Follow this and additional works at: https://digitalcommons.utep.edu/open_etd Part of the Zoology Commons Recommended Citation Portillo, Francisco, "Systematics Of Collared Snakes And Burrowing Asps (aparallactinae And Atractaspidinae) (squamata: Lamprophiidae)" (2017). Open Access Theses & Dissertations. 731. https://digitalcommons.utep.edu/open_etd/731 This is brought to you for free and open access by DigitalCommons@UTEP. It has been accepted for inclusion in Open Access Theses & Dissertations by an authorized administrator of DigitalCommons@UTEP. For more information, please contact [email protected]. SYSTEMATICS OF COLLARED SNAKES AND BURROWING ASPS (APARALLACTINAE AND ATRACTASPIDINAE) (SQUAMATA: LAMPROPHIIDAE) FRANCISCO PORTILLO, BS, MS Doctoral Program in Ecology and Evolutionary Biology APPROVED: Eli Greenbaum, Ph.D., Chair Carl Lieb, Ph.D. Michael Moody, Ph.D. Richard Langford, Ph.D. Charles H. Ambler, Ph.D. Dean of the Graduate School Copyright © by Francisco Portillo 2017 SYSTEMATICS OF COLLARED SNAKES AND BURROWING ASPS (APARALLACTINAE AND ATRACTASPIDINAE) (SQUAMATA: LAMPROPHIIDAE) by FRANCISCO PORTILLO, BS, MS DISSERTATION Presented to the Faculty of the Graduate School of The University of Texas at El Paso in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Department of Biological Sciences THE UNIVERSITY OF TEXAS AT EL PASO May 2017 ACKNOWLEDGMENTS First, I would like to thank my family for their love and support throughout my life. I am very grateful to my lovely wife, who has been extremely supportive, motivational, and patient, as I have progressed through graduate school. -
Patterns of Species Richness, Endemism and Environmental Gradients of African Reptiles
Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Patterns of species richness, endemism ARTICLE and environmental gradients of African reptiles Amir Lewin1*, Anat Feldman1, Aaron M. Bauer2, Jonathan Belmaker1, Donald G. Broadley3†, Laurent Chirio4, Yuval Itescu1, Matthew LeBreton5, Erez Maza1, Danny Meirte6, Zoltan T. Nagy7, Maria Novosolov1, Uri Roll8, 1 9 1 1 Oliver Tallowin , Jean-Francßois Trape , Enav Vidan and Shai Meiri 1Department of Zoology, Tel Aviv University, ABSTRACT 6997801 Tel Aviv, Israel, 2Department of Aim To map and assess the richness patterns of reptiles (and included groups: Biology, Villanova University, Villanova PA 3 amphisbaenians, crocodiles, lizards, snakes and turtles) in Africa, quantify the 19085, USA, Natural History Museum of Zimbabwe, PO Box 240, Bulawayo, overlap in species richness of reptiles (and included groups) with the other ter- Zimbabwe, 4Museum National d’Histoire restrial vertebrate classes, investigate the environmental correlates underlying Naturelle, Department Systematique et these patterns, and evaluate the role of range size on richness patterns. Evolution (Reptiles), ISYEB (Institut Location Africa. Systematique, Evolution, Biodiversite, UMR 7205 CNRS/EPHE/MNHN), Paris, France, Methods We assembled a data set of distributions of all African reptile spe- 5Mosaic, (Environment, Health, Data, cies. We tested the spatial congruence of reptile richness with that of amphib- Technology), BP 35322 Yaounde, Cameroon, ians, birds and mammals. We further tested the relative importance of 6Department of African Biology, Royal temperature, precipitation, elevation range and net primary productivity for Museum for Central Africa, 3080 Tervuren, species richness over two spatial scales (ecoregions and 1° grids). We arranged Belgium, 7Royal Belgian Institute of Natural reptile and vertebrate groups into range-size quartiles in order to evaluate the Sciences, OD Taxonomy and Phylogeny, role of range size in producing richness patterns. -
A Rain Forest Lizard with Disjunct Distribution?
New country records of Adolfus africanus – a rain forest lizard with disjunct distribution? New country records of Adolfus africanus (Sauria: Lacertidae) – a rain forest lizard with disjunct distribution? JÖRN KÖHLER, PHILIPP WAGNER, STEFANIE VISSER & WOLFGANG BÖHME Abstract The lacertid lizard Adolfus africanus is recorded from Kakamega Forest, western Kenya, and Imatong Mountains, southern Sudan. Both localities represent first country records for the species. Kakamega Forest constitutes the easternmost locality for A. africanus which was also recorded from Cameroon. The known distribution of this rain forest species is reviewed and discussed in a biogeographical context. Key words: Reptilia: Sauria: Lacertidae: Adolfus africanus; Kenya; Sudan; first records; distribution; biogeography. Introduction In sub-Saharan Africa lacertid lizards are represented by 12 genera. Currently, four valid species are recognised in the genus Adolfus. Adolfus alleni (BARBOUR, 1914) is a mountain endemic known only from high moor lands of Mt. Kenya, Aberdares, the Cherangani Hills and Mt. Elgon in Kenya and adjoining Uganda. In comparison, Adolfus jacksoni (BOULENGER, 1899) and A. vauereselli (TORNIER, 1902) both have a wider distribution, although their range is restricted to mid-elevations in East Africa and the easternmost Republic of the Congo. Whereas A. jacksoni seems to be most tolerant to human disturbance, A. vauereselli is considered a forest species (ARNOLD 1989, SPAWLS et al. 2002). Thus the distribution for the three species mentioned is predominantly East African. A remarkable exception is Adolfus africanus (BOULENGER, 1906), described from the northern shore of Lake Victoria, Entebbe, Uganda, and also known from the countries of Rwanda, eastern Democratic Republic of the Congo, Zambia and Cameroon (e. -
A Survey of Amphibians and Reptiles in the Foothills of Mount Kupe, Cameroon
Official journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 10(2) [Special Section]: 37–67 (e131). A survey of amphibians and reptiles in the foothills of Mount Kupe, Cameroon 1,2Daniel M. Portik, 3,4Gregory F.M. Jongsma, 3Marcel T. Kouete, 3Lauren A. Scheinberg, 3Brian Freiermuth, 5,6Walter P. Tapondjou, and 3,4David C. Blackburn 1Museum of Vertebrate Zoology, University of California, Berkeley, 3101 Valley Life Sciences Building, Berkeley, California 94720, USA 2Department of Biology, University of Texas at Arlington, 501 S. Nedderman Drive, Box 19498, Arlington, Texas 76019-0498, USA 3California Academy of Sciences, San Francisco, California 94118, USA 4Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, USA 5Laboratory of Zoology, Faculty of Science. University of Yaoundé, PO Box 812 Yaoundé, Cameroon, AFRICA 6Department of Ecology and Evolutionary Biology, University of Kansas, 1450 Jayhawk Boulevard, Lawrence, Kansas 66045, USA Abstract.—We performed surveys at several lower elevation sites surrounding Mt. Kupe, a mountain at the southern edge of the Cameroonian Highlands. This work resulted in the sampling of 48 species, including 38 amphibian and 10 reptile species. By combining our data with prior survey results from higher elevation zones, we produce a checklist of 108 species for the greater Mt. Kupe region including 72 frog species, 21 lizard species, and 15 species of snakes. Our work adds 30 species of frogs at lower elevations, many of which are associated with breeding in pools or ponds that are absent from the slopes of Mt. Kupe. We provide taxonomic accounts, including museum specimen data and associated molecular data, for all species encountered. -
Bonner Zoologische Beiträge
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Bonn zoological Bulletin - früher Bonner Zoologische Beiträge. Jahr/Year: 2007 Band/Volume: 55 Autor(en)/Author(s): Wagner Philipp, Böhme Wolfgang Artikel/Article: Herpetofauna Kakamegensis - The amphibians and reptiles of Kakamega Forest, western Kenya 123-150 © Biodiversity Heritage Library, http://www.biodiversitylibrary.org/; www.zoologicalbulletin.de; www.biologiezentrum.at Bonner zoologische Beiträge Band 55 (2006) Heft 2 Seiten 123-150 Bonn, Juli 2007 Herpetofauna Kakamegensis - The amphibians and reptiles of Kakamega Forest, western Kenya Philipp Wagner & Wolfgang Böhme Bonn, Gemiany Abstract. We present an annotated checklist of the herpetofauna of Kakamega Forest with comments on the biology and systematics of the taxa. Twenty-five amphibian, one turtle, 22 lizard and 36 snake species are recorded from within the forest and its immediate environment. We discuss the generalized zoogeography of the forest and distribution pattern of the taxa comment on the protection of the forest. Analysis of the reptile species composition shows Kakamega Forest to be similar to the Guinea-Congolian rainforest and is considered the easternmost remnant of this forest block. Kakamega forest has a high diversity value for Kenya and represents a diversity hotspot on a national scale. Two species, Lrgodac- t}'lus gutturalis and Psammophis phillipsi. are recorded in Kenya for the first time. Several other first records and the description of a new species (Agamidae: Agama finchi) were published already separately. Keywords. East Africa, Kenya, Kakamega Forest, herpetological survey, checklist, national diversity hotspot. 1. INTRODUCTION In Africa tropical rainforests extend from southern Sene- covery and scientific descriptions. -
Mitogenome Analyses Elucidate the Evolutionary Relationships of a Probable Eocene Wet Tropics Relic in the Xerophilic Lizard
www.nature.com/scientificreports OPEN Mitogenome analyses elucidate the evolutionary relationships of a probable Eocene wet tropics relic in the xerophilic lizard genus Acanthodactylus Sebastian Kirchhof 1*, Mariana L. Lyra2, Ariel Rodríguez3, Ivan Ineich4, Johannes Müller5, Mark‑Oliver Rödel5, Jean‑François Trape6, Miguel Vences7 & Stéphane Boissinot1 Climate has a large impact on diversity and evolution of the world’s biota. The Eocene–Oligocene transition from tropical climate to cooler, drier environments was accompanied by global species turnover. A large number of Old World lacertid lizard lineages have diversifed after the Eocene– Oligocene boundary. One of the most speciose reptile genera in the arid Palearctic, Acanthodactylus, contains two sub‑Saharan species with unresolved phylogenetic relationship and unknown climatic preferences. We here aim to understand how and when adaptation to arid conditions occurred in Acanthodactylus and when tropical habitats where entered. Using whole mitogenomes from fresh and archival DNA and published sequences we recovered a well‑supported Acanthodactylus phylogeny and underpinned the timing of diversifcation with environmental niche analyses of the sub‑Saharan species A. guineensis and A. boueti in comparison to all arid Acanthodactylus. We found that A. guineensis represents an old lineage that splits from a basal node in the Western clade, and A. boueti is a derived lineage and probably not its sister. Their long branches characterize them—and especially A. guineensis—as lineages that may have persisted for a long time without further diversifcation or have undergone multiple extinctions. Environmental niche models verifed the occurrence of A. guineensis and A. boueti in hot humid environments diferent from the other 42 arid Acanthodactylus species.