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Megalocytivirus Induces Complicated Fish Immune Response at Multiple RNA Levels Involving Mrna, Mirna, and Circrna
International Journal of Molecular Sciences Article Megalocytivirus Induces Complicated Fish Immune Response at Multiple RNA Levels Involving mRNA, miRNA, and circRNA Qian Wu 1,2,3, Xianhui Ning 1 and Li Sun 1,2,3,* 1 CAS and Shandong Province Key Laboratory of Experimental Marine Biology, CAS Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, China; [email protected] (Q.W.); [email protected] (X.N.) 2 Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, 1 Wenhai Road, Qingdao 266237, China 3 College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China * Correspondence: [email protected]; Tel.: +86-532-82898829 Abstract: Megalocytivirus is an important viral pathogen to many farmed fishes, including Japanese flounder (Paralichthys olivaceus). In this study, we examined megalocytivirus-induced RNA responses in the spleen of flounder by high-throughput sequencing and integrative analysis of various RNA- seq data. A total of 1327 microRNAs (miRNAs), including 368 novel miRNAs, were identified, among which, 171 (named DEmiRs) exhibited significantly differential expressions during viral infection in a time-dependent manner. For these DEmiRs, 805 differentially expressed target mRNAs (DETmRs) were predicted, whose expressions not only significantly changed after megalocytivirus infection but were also negatively correlated with their paired DEmiRs. Integrative analysis of Citation: Wu, Q.; Ning, X.; Sun, L. Megalocytivirus Induces immune-related DETmRs and their target DEmiRs identified 12 hub DEmiRs, which, together with Complicated Fish Immune Response their corresponding DETmRs, formed an interaction network containing 84 pairs of DEmiR and at Multiple RNA Levels Involving DETmR. -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................ -
Genome Analysis of Ranavirus Frog Virus 3Isolated from American Bullfrog
www.nature.com/scientificreports OPEN Genome analysis of Ranavirus frog virus 3 isolated from American Bullfrog (Lithobates catesbeianus) in South America Marcelo Candido 1*, Loiane Sampaio Tavares1, Anna Luiza Farias Alencar2, Cláudia Maris Ferreira3, Sabrina Ribeiro de Almeida Queiroz1, Andrezza Maria Fernandes1 & Ricardo Luiz Moro de Sousa1 Ranaviruses (family Iridoviridae) cause important diseases in cold-blooded vertebrates. In addition, some occurrences indicate that, in this genus, the same virus can infect animals from diferent taxonomic groups. A strain isolated from a Ranavirus outbreak (2012) in the state of Sao Paulo, Brazil, had its genome sequenced and presented 99.26% and 36.85% identity with samples of Frog virus 3 (FV3) and Singapore grouper iridovirus (SGIV) ranaviruses, respectively. Eight potential recombination events among the analyzed sample and reference FV3 samples were identifed, including a recombination with Bohle iridovirus (BIV) sample from Oceania. The analyzed sample presented several rearrangements compared to FV3 reference samples from North America and European continent. We report for the frst time the complete genome of Ranavirus FV3 isolated from South America, these results contribute to a greater knowledge related to evolutionary events of potentially lethal infectious agent for cold-blooded animals. Among the major viral pathogens, worldwide distributed and recent history, Ranavirus (Rv) is highlighted, on which, studies in South America remain limited. Rv are part of the family Iridoviridae that is divided into fve genera, of which three are considered more relevant by infectious severity in aquatic and semi-aquatic animals: Lymphocystivirus, Megalocytivirus and Rv. Tey are enveloped and unenveloped viruses, showing double-stranded DNA whose genome ranges from 103 to 220 kbp. -
Impact of Formulated Diets on the Growth and Survival of Ornamental Fish Pterophyllum Scalare (Angel Fish) A
e Rese tur arc ul h c & a u D q e A v e f l o o l p a m n Journal of Aquaculture r e Ali, et al., J Aquac Res Development 2016, 7:4 u n o t J DOI: 10.4172/2155-9546.1000421 ISSN: 2155-9546 Research & Development Research Article Open Access Impact of Formulated Diets on the Growth and Survival of Ornamental Fish Pterophyllum Scalare (Angel Fish) A. Hyder Ali, A. Jawahar Ali, M. Saiyad Musthafa*, M.S. Arun Kumar, Mohamed Saquib Naveed, Mehrajuddin War and K. Altaff Department of Zoology, The New College, Chennai, India *Corresponding author: M. Saiyad Musthafa, P.G & Research Department of Zoology, The New College, Chennai 6000 14. India, Tel: 099627 32780; E-mail: [email protected] Rec date: February 17, 2016; Acc date: March 18, 2016; Pub date: March 20, 2016 Copyright: © 2016 Ali AH, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract A feeding trail was conducted on juvenile of angel fish Pterophyllum scalare to investigate the effect of three different diets such as animal based protein, plant based protein and mixed protein on growth and survival rate of the fish. Juvenile Pterophyllum scalare were divided into three groups, fed with three different protein based diets along with control group. Before the feeding trail, the initial length and weight were measured. During the 4 weeks of experiment, fish were fed 3% body weight at a daily rate. -
Altum “Orinoco” Angelfish ( Pterophyllum Altum )
Altum “Orinoco” Angelfish ( Pterophyllum altum ) Order: Perciformes - Family: Cichlidae Type: Tropical Also known as: the Altum Angelfish, Deep Angelfish, or Orinoco Angelfish. Origin: It occurs strictly in the Orinoco River Basin and the Upper Rio Negro watershed in South- ern Venezuela, Southeastern Colombia and extreme Northern Brazil. Pterophyllum altum is the national fish of Venezuela and an image of the fish appears on some currency bills of that country. Overview: They are considered one of the most beautiful angels, but are more difficult to keep than the common angelfish, Pterophyllum scalare. They are also difficult to find in pet stores, as they are usually wild caught. Description: Pterophyllum altum, the species most commonly referred to as angelfish or freshwater angelfish, is the most common species of Pterophyllum held in captivity. Physical Characteristics: The species is the largest of the genus and specimens exceeding 50 cm in height (from tip of dorsal to tip of anal fin) have been reported in the wild; in aquariums, specimens are known to have grown to over 40 cm. Its natural base color is silver but with three brownish/red vertical stripes and red striations into the fins. The species may show red spotting and a bluish green dorsal overcast when mature and when aroused exhibits a black operculum spot. Characteristic of this species is an acute incision or notch above the nares (supraobital indention). All true Orinoco Altum specimens show this trait, whereas commercial hybrids product of crosses to Pterophyllum scalare, that are occasionally performed by breeders to sell them as "Orinoco Altum", may not exhibit the trait or it may appear in a lesser degree. -
Economic and Logistical Viability of Production of Freshwater Angelfish (Pterophyllum Scalare)
Braz. J. Aquat. Sci. Technol., 2018, 22(1). ECONOMIC AND LOGISTICAL VIABILITY OF PRODUCTION OF FRESHWATER ANGELFISH (PTEROPHYLLUM SCALARE) TAKATSUKA, V.¹; NAVARRO, R. D. ¹* 1. Laboratório de Aquicultura e de Biotecnológica de Organismos Aquáticos, Faculdade de Agrono- mia e Medicina Veterinária, Universidade de Brasília, Brasília, DF, Brazil. *Corresponding author: [email protected] ABSTRACT TAKATSUKA, V. & NAVARRO, R. D. (2018). Economic and Logistical Viability of Production of Freshwater Angelfish (Pterophyllum scalare). Braz. J. Aquat. Sci. Technol. 22(1). eISSN 1983-9057. DOI: 10971/bjast.v22n1. The freshwater Angelfish stands out for being one of the most beautiful, best-selling and also most popular ornamental fish of tropical waters. Its cultivation is concentrated in the southeastern and southern regions of Brazil, so reproduction of this species in other areas can become a profitable venture. The present study analyzed the economic viability of the cultivation of the freshwater Angelfish, Pterophyllum scalare, in a water recirculation system. To measure the market demand, an interview was conducted with the main tenants in the industry, adding to the estimate. The profitability of the venture was 2,65% in the first year and 11,95% in the second to the tenth year and the payback rate was 38 months or 3 years and 2 months. Small-scale farming proved to be economically viable, presenting attractive profitability indicators compared to other aquaculture enterprises. Key Words: Aquaculture; Pisciculture; Aquarism; Cultivation; Ornamental fish. INTRODUCTION end consumer. Fans of the species can be affected by the disclosure and online sales. Currently, the ornamental fish population kept The water recirculation system is suitable for the as pets in Brazil totalizes 25.5 million individuals. -
The Angelfish
NUTRAFIN Nr.3/USA 17-07-2003 11:28 Pagina 1 Aquatic News 2,50 US$/3,50 Can$/2,50 Euro/2 £/5 Aus$ £/5 2,50 US$/3,50 Can$/2,50 Euro/2 AngelfishesAngelfishes Issue #3 Issue #3 - 2003 www.hagen.com NUTRAFIN Nr.3/USA 17-07-2003 11:28 Pagina 2 Simulates full daylight Intensifies fish colors, Promotes coral, For growing plants Full spectrum Standard intensity Standard Intensity promotes plant growth invertebrate and Standard Intensity Beneficial for planted Visible actinic blue Refreshing, natural Standard Intensity plant growth Warm photosynthetic aquariums spectrum white light Photosynthetic growing High color temperature Spectrum Intense illumination Simulates deep Total illumination for lamp for simulation of natural Ideal for planted Bright, natural lighting marine light marine spectrum freshwater aquariums Ideal for freshwater aquariums or For freshwater, Highly beneficial plants Strong actinic peak for terrariums saltwater, and planted for corals and other photosynthetic deep aquariums invertebrates marine spectrum Total illumination for living corals, marine algae and freshwater plants Distributed by: Canada: Rolf C. Hagen Inc., Montreal, QC H4R 1E8 U.S.A.: Rolf C. Hagen (U.S.A.) Corp., Mansfield, MA. 02048 U.K.: Rolf C. Hagen (U.K.) Ltd., Castleford, W. Yorkshire WF10 5QH NUTRAFIN Nr.3/USA 17-07-2003 11:28 Pagina 3 Editorial Editorial Dear Reader has long ceased to be the case. NUTRAFIN Aquatic NUTRAFIN Aquatic News News is now well and truly believes in sticking to a suc- international – published in no cessful formula. In this issue less than six different lan- you will again find the red guages. -
Angelfish ( Pterophyllum Scalare Varieties )
Angelfish ( Pterophyllum scalare Varieties ) Order: Perciformes - Family: Cichlidae Type: Tropical Description: Pterophyllum scalare, the species most commonly referred to as angelfish or freshwater angelfish,[8] is the most common species of Pterophyllum held in captivity. Its natural habitat Amazon River basin in Peru, Colombia, and Brazil, particularly the Ucayali, Solimões and Amazon rivers, as well as the rivers of Amapá in Brazil, the Oya- pock River in French Guiana and the Essequibo River in Guyana. It is found in swamps or flooded grounds where vegetation is dense and the water is either clear or silty.[9] Its native water conditions range from a pH of 6.0 to 8.0, a water hardness range of 5 - 13 dH, and water temperature ranging from 24 to 30 °C (75 to 86 °F).[9] It was originally described as Zeus scalaris in 1823, and has also been described be several different names Max. Size: In an aquarium with the right conditions, they arrive at measure 15 cm. tall by 10 cm. long. Common Phenotypes: • Silver (+/+) The most commonly pictured form, also referred to as “wild-type”, does not contain any dominant color genes and at most a single dose of any recessive genes. Has silver body with 4 vertical black stripes. The stripes will fade (usually when under stress) and darken (usually when breeding) with mood. • Gold (g/g) Gold is one of the hardiest and most attractive strains. Some of these will develop an intense orange crown. Gold is a recessive trait, like blue eyes in humans. • Zebra (Z/+ or Z/Z) A Zebra is a Silver with extra stripes; this is a very popular strain. -
The Megalocytivirus RBIV Induces Apoptosis and MHC Class I Presentation in Rock Bream (Oplegnathus Fasciatus) Red Blood Cells
ORIGINAL RESEARCH published: 04 March 2019 doi: 10.3389/fimmu.2019.00160 The Megalocytivirus RBIV Induces Apoptosis and MHC Class I Presentation in Rock Bream (Oplegnathus fasciatus) Red Blood Cells Myung-Hwa Jung 1, Verónica Chico 2, Sergio Ciordia 3, Maria Carmen Mena 3, Sung-Ju Jung 1 and Maria Del Mar Ortega-Villaizan 2* 1 Department of Aqualife Medicine, Chonnam National University, Gwangju, South Korea, 2 IBMC-IDiBE, Universidad Miguel Hernandez, Elche, Spain, 3 Unidad de Proteómica, Centro Nacional de Biotecnología (CSIC), Madrid, Spain Rock bream iridovirus (RBIV) causes severe mass mortality in Korean rock bream (Oplegnathus fasciatus) populations. To date, immune defense mechanisms of rock bream against RBIV are unclear. While red blood cells (RBCs) are known to be involved in the immune response against viral infections, the participation of rock bream RBCs in the immune response against RBIV has not been studied yet. In this study, we examined induction of the immune response in rock bream RBCs Edited by: Brian Dixon, after RBIV infection. Each fish was injected with RBIV, and virus copy number in University of Waterloo, Canada RBCs gradually increased from 4 days post-infection (dpi), peaking at 10 dpi. A total Reviewed by: of 318 proteins were significantly regulated in RBCs from RBIV-infected individuals, Stephanie DeWitte-Orr, 183 proteins were upregulated and 135 proteins were downregulated. Differentially Wilfrid Laurier University, Canada Magdalena Chadzinska, upregulated proteins included those involved in cellular amino acid metabolic processes, Jagiellonian University, Poland cellular detoxification, snRNP assembly, and the spliceosome. Remarkably, the MHC *Correspondence: class I-related protein pathway was upregulated during RBIV infection. -
International Journal of Fisheries and Aquaculture
OPEN ACCESS International Journal of Fisheries and Aquaculture February 2019 ISSN 2006-9839 DOI: 10.5897/IJFA www.academicjournals.org ABOUT IJFA The International Journal of Fisheries and Aquaculture (IJFA) (ISSN: 2006-9839) is an open access journal that provides rapid publication (monthly) of articles in all areas of the subject such as algaculture, Mariculture, fishery in terms of ecosystem health, Fisheries acoustics etc. The Journal welcomes the submission of manuscripts that meet the general criteria of significance and scientific excellence. Papers will be published shortly after acceptance. All articles published in the IJFA are peer-reviewed. Contact Us Editorial Office: [email protected] Help Desk: [email protected] Website: http://www.academicjournals.org/journal/IJFA Submit manuscript online http://ms.academicjournals.me/ Editors Dr. V.S. Chandrasekaran Central Institute of Brackishwater Aquaculture Indian Council of Agricultural Research (ICAR) Chennai, India. Prof. Nihar Rajan Chattopadhyay Department of Aquaculture Faculty of Fishery Sciences West Bengal University of Animal & Fishery Sciences West Bengal, India. Dr. Lourdes Jimenez-Badillo Ecology and Fisheries Centre Universidad Veracruzana Veracruz, México. Dr. Kostas Kapiris Institute of Marine Biological Resources of H.C.M.R. Athens, Greece. Dr. Masoud Hedayatifard Department of Fisheries Sciences and Aquaculture College of Agriculture and Natural Resources Advanced Education Center Islamic Azad University Ghaemshahr, Iran. Dr. Zhang Xiaoshuan China Agricultural University Beijing, China. Dr Joseph Selvin Marine Bioprospecting Lab Dept of Microbiology Bharathidasan University Tiruchirappalli, India. Dr. Sebastián Villasante Editorial Board Fisheries Economics and Natural Resources Research Unit University of Santiago de Compostela Dr. Dada Adekunle Ayokanmi A Coruña, Department of Fisheries and Aquaculture Spain. -
First Report of Megalocytivirus (Iridoviridae) in Grouper Culture in Sabah, Malaysia
Int.J.Curr.Microbiol.App.Sci (2014) 3(3): 896-909 ISSN: 2319-7706 Volume 3 Number 3 (2014) pp. 896-909 http://www.ijcmas.com Original Research Article First report of Megalocytivirus (Iridoviridae) in grouper culture in Sabah, Malaysia Asrazitah Abd Razak1, Julian Ransangan1* and Ahemad Sade2 1Microbiology and Fish Disease Laboratory, Borneo Marine Research Institute, Universiti Malaysia Sabah, Jalan UMS, 88400, Kota Kinabalu, Sabah, Malaysia 2Fisheries Department Sabah, Wisma Pertanian, Jalan Tasek, 88628 Kota Kinabalu, Sabah, Malaysia *Corresponding author A B S T R A C T Groupers are popular aquaculture species in Sabah, Malaysia. However, its aquaculture production is often limited by disease outbreaks. Although many diseases are known to affect groupers, iridovirus infection is a major concern because it causes high mortality within a short period of time. Recently, a disease resembled to iridovirus occurred and caused heavy losses to grouper aquaculture in K e y w o r d s Sabah. This has prompted us to conduct a study with the aim to determine if iridovirus present in the culture groupers. In this study, we examined 212 fish Grouper; specimens, which represented all the major culture grouper species in Malaysia. Megalo- The examination was carried out using single- and nested-PCR methods and cytivirus; followed by DNA sequencing. Two genes (major capsid protein and ATPase) were ISKNV; targeted for the PCR amplification and DNA sequencing. The finding showed nested-PCR; 15.6% (33/212) of the grouper specimens were severely infected by iridovirus. Sabah; Meanwhile, 17.4% of the specimens exhibited latent infection or asymptomatic Malaysia carriers. -
Growth of Angel Fish Pterophyllum Scalare [Gunther, 1862] Juveniles Fed Inert Diets
AVANCES EN INVESTIGACIÓN AGROPECUARIA Growth of angel fish Pterophyllum scalare [Gunther, 1862] juveniles fed inert diets Crecimiento de juveniles del pez ángel Pterophyllum scalare [Gunther, 1862] alimentados con dietas inertes García-Ulloa, M.* and Gómez-Romero, H. J. Laboratorio de Ciencias Marinas, Universidad Autónoma de Guadalajara, A. P. 3, Barra de Navidad, Jalisco, C. P. 48987 México. Tel. and fax: + 315 35 55130. * To whom the correspondence should be addressed. E-mail: [email protected] Abstract Resumen The growth, feed conversion ratio (FCR), Se investigó el crecimiento, conversión ali- survival and stress resistance of angel fish Ptero- menticia (FCR), sobrevivencia y resistencia al phyllum scalare juveniles fed different diets (de- estrés de juveniles del pez ángel Pterophyllum sca- capsulated Artemia cysts DAC, commercial flakes lare, alimentados con diferentes dietas inertes (quis- CF, commercial pellets CP, and a commercial tes decapsulados de Artemia DAC, hojuelas co- starter diet for tilapia CSDT), were investigated. merciales CF, pelets comerciales CP y una dieta Diets were studied with three replicates and adjus- comercial iniciadora para tilapia CSDT). Las ted at 8% of daily feeding ratio. Fish had an ave- dietas fueron estudiadas con tres réplicas y la ra- rage initial wet weight of 0.44 g. Diets showed a ción alimenticia fue ajustada al 8% de la biomasa significant effect on fish growth performance from total. Los peces pesaron 0.44 g en promedio, al the first sampling day onwards. After 45 culture inicio. Las dietas mostraron un efecto significati- days, fish fed with the DAC diet showed the hig- vo sobre el crecimiento de los peces desde la pri- hest mean standard length, wet weight and speci- mera biometría.