Two-way Heteroscedastic ANOVA when the Number of Levels is Large Short Running Title: Two-way ANOVA Lan Wang 1 and Michael G. Akritas 2 Revision: January, 2005 Abstract We consider testing the main treatment e®ects and interaction e®ects in crossed two-way layout when one factor or both factors have large number of levels. Random errors are allowed to be nonnormal and heteroscedastic. In heteroscedastic case, we propose new test statistics. The asymptotic distributions of our test statistics are derived under both the null hypothesis and local alternatives. The sample size per treatment combination can either be ¯xed or tend to in¯nity. Numerical simulations indicate that the proposed procedures have good power properties and maintain approximately the nominal ®-level with small sample sizes. A real data set from a study evaluating forty varieties of winter wheat in a large-scale agricultural trial is analyzed. Key words: heteroscedasticity, large number of factor levels, unbalanced designs, quadratic forms, projection method, local alternatives 1385 Ford Hall, School of Statistics, University of Minnesota, 224 Church Street SE, Minneapolis, MN 55455. Email:
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[email protected], phone: (814) 865-3631, fax: (814) 863-7114. 1 Introduction In many experiments, data are collected in the form of a crossed two-way layout. If we let Xijk denote the k-th response associated with the i-th level of factor A and j -th level of factor B, then the classical two-way ANOVA model speci¯es that: Xijk = ¹ + ®i + ¯j + γij + ²ijk (1.1) where i = 1; : : : ; a; j = 1; : : : ; b; k = 1; 2; : : : ; nij, and to be identi¯able the parameters Pa Pb Pa Pb are restricted by conditions such as i=1 ®i = j=1 ¯j = i=1 γij = j=1 γij = 0.