DOCSLIB.ORG

A Locus on Distal Chromosome 11 (Ahl8) and Its Interaction with Cdh23ahl Underlie the Early Onset, Age-Related Hearing Loss of DBA/2J Mice

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
A Locus on Distal Chromosome 11 (Ahl8) and Its Interaction with Cdh23ahl Underlie the Early Onset, Age-Related Hearing Loss of DBA/2J Mice View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Genomics 92 (2008) 219–225 Contents lists available at ScienceDirect Genomics journal homepage: www.elsevier.com/locate/ygeno A locus on distal chromosome 11 (ahl8) and its interaction with Cdh23ahl underlie the early onset, age-related hearing loss of DBA/2J mice Kenneth R. Johnson a,⁎, Chantal Longo-Guess a, Leona H. Gagnon a, Heping Yu b, Qing Yin Zheng b a The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA b Department of Otolaryngology-Head and Neck Surgery, Case Western Reserve University, University Hospitals-Case Medical Center, 11100 Euclid Avenue, Cleveland, OH 44106, USA article info abstract Article history: The DBA/2J inbred strain of mice is used extensively in hearing research, yet little is known about the genetic Received 7 April 2008 basis for its early onset, progressive hearing loss. To map underlying genetic factors we analyzed recombinant Accepted 23 June 2008 inbred strains and linkage backcrosses. Analysis of 213 mice from 31 BXD recombinant inbred strains Available online 15 August 2008 detected linkage of auditory brain-stem response thresholds with a locus on distal chromosome 11, which we designate ahl8. Analysis of 225 N2 mice from a backcross of (C57BL/6J×DBA/2J) F1 hybrids to DBA/2J mice Keywords: confirmed this linkage (LODN50) and refined the ahl8 candidate gene interval. Analysis of 214 mice from a Presbycusis Ahl+ Age-related hearing loss backcross of (B6.CAST-Cdh23 ×DBA/2J) F1 hybrids to DBA/2J mice demonstrated a genetic interaction of Progressive hearing loss Cdh23 with ahl8. We conclude that ahl8 is a major contributor to the hearing loss of DBA/2J mice and that its Inbred strains of mice effects are dependent on the predisposing Cdh23ahl genotype of this strain. DBA © 2008 Elsevier Inc. All rights reserved. Auditory brainstem response Chromosome mapping Quantitative trait loci QTL Complex trait genetics Age-related hearing loss, or presbycusis, negatively affects the quality AHL loci have yet to be identified; however, once identified they can be of life for many elderly individuals [1].Aboutone-thirdofadultsolder tested as candidate genes for human presbycusis susceptibility. than 60 and about half the population by age 80 suffer from a significant DBA/2J is a well-established mouse strain that was derived from hearing loss [2]. Genetic factors have been shown to contribute to the DBA, the oldest of all inbred strains of mice [19]. Mice of the DBA/2J progression and severity of age-related hearing loss (AHL) [3],but strain (henceforth designated D2) begin to exhibit a high-frequency variable environmental factors (such as exposures to loud noise, ototoxic (N16 kHz) hearing loss as early as 3 weeks of age that progresses to a drugs, and disease) coupled with the late onset of the disorder make severe broad frequency hearing loss by 2–3 months and is accom- gene identification studies extremely difficult in human populations [4]. panied by a rapid, progressive degeneration of the organ of Corti and Nonetheless, large-scale association studies of candidate genes have spiral ganglia [20,21]. D2 mice have been used extensively to study begun to identify a few gene variants that may be causative, including various aspects of both peripheral and central hearing loss and related variants of the NAT2 [5], KCNQ4 [6],andGRHL2 genes [7]. pathologies. A PubMed search retrieved more than 100 articles related The laboratory mouse offers a complementary approach for to the use of this strain in auditory research. D2 mice have been used studying the genetic basis and pathophysiology of AHL. Many inbred to study susceptibility to audiogenic seizures and response properties mouse strains exhibit AHL [8] and are easily amenable to genetic and morphologies of auditory neurons [20,22–25]. D2 mice also have analysis [9]. Several quantitative trait loci (QTL) associated with AHL in been used to study the effects of an augmented acoustic environ- mice have been genetically mapped by inbred strain crosses, including ment on the auditory system [21,26]. D2 mice recently were used in a ahl [10,11], ahl2 [12], ahl3 [13,14], ahl4 [15], ahl5 and ahl6 [16], and microarray study of cochlear gene expression, which detected Phl1 and Phl2 [17].Refined genetic and molecular analyses have significant age-related changes in over 4000 genes, including many provided strong evidence that ahl is an inbred strain-specific dimor- that are involved in mitochondrial respiratory chain complexes [27]. phism of the Cdh23 gene [18]. The recessive AHL susceptibility allele Determining the genetic basis of the hearing loss exhibited by D2 mice for this locus is now designated Cdh23ahl and the dominant resistance would aid in the interpretations of these and other auditory studies allele Cdh23Ahl+. The causative gene variants for the other mapped involving this strain. In contrast to the early onset and rapid progression of hearing loss exhibited by D2 mice, high-frequency hearing loss in mice of the ⁎ Corresponding author. Fax: +1 207 288 6149. C57BL/6J inbred strain (henceforth designated B6) is not observed E-mail address: [email protected] (K.R. Johnson). until 3 months of age and does not progress to a broad frequency, 0888-7543/$ – see front matter © 2008 Elsevier Inc. All rights reserved. doi:10.1016/j.ygeno.2008.06.007 220 K.R. Johnson et al. / Genomics 92 (2008) 219–225 profound hearing loss until l0 months of age or older [8,28–30]. The Cdh23ahl allele is an important contributor to AHL in many inbred mouse strains, but because B6 and D2 share this susceptibility allele [18], other genetic factors must be responsible for their hearing loss differences. To identify these additional genetic factors, we analyzed recombinant inbred strains and a linkage backcross derived from B6 and D2 parental strains. We detected highly significant linkage of auditory brain-stem response (ABR) thresholds with a locus on distal chromosome (Chr) 11, which we designate ahl8. To evaluate the genetic interaction of ahl8 with Cdh23ahl, we analyzed an independent backcross that segregates alleles at both loci and found that the phenotypic effects of ahl8 genotypes are dependent on a predisposing Cdh23ahl genotype. Results Fig. 1. ABR thresholds of D2, B6, and F1 hybrid mice. D2 mice exhibit an early onset, We assessed hearing in mice by analyzing ABR thresholds to progressive hearing loss as shown by the average ABR thresholds of mice tested at 3.5 broad-band click and pure-tone 8-, 16-, and 32-kHz stimuli [8].We (N=9), 10 (N=5), and 27 (N=7) weeks of age (solid lines). B6D2 F1 hybrids tested at 12 first tested mice of the B6 and D2 parental strains and their F1 hybrids. fi weeks of age (N=10, dashed line) had normal ABR thresholds that were not signi cantly Hearing loss in D2 mice is progressive, with a much earlier onset than different from those of B6 mice (N=15) tested at 30 weeks of age (dotted line). ABR in B6 mice (Fig. 1). For example, at 10 weeks of age the average 16-kHz thresholds are given in dB SPL (decibels, sound pressure level). Standard error bars are shown for each threshold mean. thresholds of D2 mice are about 50 decibels (dB) higher than those of 30-week-old B6 mice, which still retain normal thresholds around 20 dB SPL (sound pressure level). The ABR thresholds of 10 B6D2F1/J Fig. 2. Genetic analysis of hearing loss in BXD recombinant inbred strains. (A) Average 16-kHz ABR thresholds (dB SPL) and their standard errors are shown for 5–12 mice from each of 31 BXD strains (a total of 213 mice) tested at 6–9 months of age. (B) The WebQTL program was used to calculate linkage associations of chromosomal markers with the ABR threshold averages shown in (A). Chromosomes are numbered across the top and megabase positions are given below each chromosome. In a genome-wide scan, only loci on distal Chr 11 exhibited statistically significant associations (LOD=4.3 for D11Mit48). The lower dotted line indicates suggestive (α=0.63) and the upper dotted line indicates significant (α=0.05) genome-wide linkage associations, determined from 1000 permutations. K.R. Johnson et al. / Genomics 92 (2008) 219–225 221 hybrid mice tested at 12 weeks of age were not statistically different from the normal thresholds of 30-week-old B6 mice. ABR thresholds and linkage analysis of BXD recombinant inbred strains As a first approach to genetically mapping loci that underlie the hearing threshold differences between B6 and D2 mice, we analyzed linkage in BXD recombinant inbred (RI) strains. RI lines are useful for obtaining rough estimates of the number of major genes affecting a complex trait and for determining their approximate map locations [31]. The BXD set of RI strains was derived by crossing B6 and D2 mice and then inbreeding separate progeny lines for over 21 generations. We retested 22 of the 25 BXD RI strains that previously had been assessed by Willott and Erway [32] and evaluated 9 new strains [33]. Fig. 4. Refined map position for ahl8 determined from the (B6×D2)×D2 backcross. The In total, we measured ABR thresholds of 213 mice (5–12 mice per 16-kHz ABR thresholds of 225 (B6×D2)×D2 N2 backcross mice were analyzed for strain) from 31 BXD RI strains. The RI strain mice were tested at 6–9 linkage associations with markers on distal Chr 11. Diamonds (13-week test age) and squares (6-week test age) denote lod scores for the following markers: D11Mit285 (89.8 months of age, an age when ABR thresholds of the parental strains Mb), D11Mit360 (103.2 Mb), D11Mit333 (108.6 Mb), D11Mit338 (115.3 Mb), D11Mit48 differ by more than 50 dB (Fig.
Load more

Recommended publications
  • Comprehensive Sequence Analysis of Nine Usher Syndrome Genes in The
    Genotype-phenotype correlations J Med Genet: first published as 10.1136/jmedgenet-2011-100468 on 1 December 2011. Downloaded from ORIGINAL ARTICLE Comprehensive sequence analysis of nine Usher syndrome genes in the UK National Collaborative Usher Study Polona Le Quesne Stabej,1 Zubin Saihan,2,3 Nell Rangesh,4 Heather B Steele-Stallard,1 John Ambrose,5 Alison Coffey,5 Jenny Emmerson,5 Elene Haralambous,1 Yasmin Hughes,1 Karen P Steel,5 Linda M Luxon,4,6 Andrew R Webster,2,3 Maria Bitner-Glindzicz1,6 < Additional materials are ABSTRACT characterised by congenital, moderate to severe published online only. To view Background Usher syndrome (USH) is an autosomal hearing loss, with normal vestibular function and these files please visit the recessive disorder comprising retinitis pigmentosa, onset of RP around or after puberty; and type III journal online (http://jmg.bmj. fi com/content/49/1.toc). hearing loss and, in some cases, vestibular dysfunction. (USH3), de ned by postlingual progressive hearing 1 It is clinically and genetically heterogeneous with three loss and variable vestibular response together with Clinical and Molecular e 1 2 Genetics, Institute of Child distinctive clinical types (I III) and nine Usher genes RP. In addition there remain patients whose Health, UCL, London, UK identified. This study is a comprehensive clinical and disease does not fit into any of these three 2Institute of Ophthalmology, genetic analysis of 172 Usher patients and evaluates the subtypes, because of atypical audiovestibular or UCL, London, UK fi ‘ 3 contribution of digenic inheritance. retinal ndings, who are said to have atypical Moorfields Eye Hospital, Methods The genes MYO7A, USH1C, CDH23, PCDH15, ’ London, UK Usher syndrome .
    [Show full text]
  • Diversity of the Genes Implicated in Algerian Patients Affected by Usher Syndrome
    RESEARCH ARTICLE Diversity of the Genes Implicated in Algerian Patients Affected by Usher Syndrome Samia Abdi1,2,3, Amel Bahloul4, Asma Behlouli1,5, Jean-Pierre Hardelin4, Mohamed Makrelouf1, Kamel Boudjelida3,6, Malek Louha7, Ahmed Cheknene3,8, Rachid Belouni2,3, Yahia Rous3,8, Zahida Merad3,6, Djamel Selmane9, Mokhtar Hasbelaoui10, Crystel Bonnet11, Akila Zenati1, Christine Petit4,11,12* 1 Laboratoire de biochimie génétique, Service de biologie - CHU de Bab El Oued, Université d'Alger 1, 16 Alger, Algérie, 2 Laboratoire central de biologie, CHU Frantz Fanon, 09 Blida, Algérie, 3 Faculté de médecine, Université Saad Dahleb, 09 Blida, Algérie, 4 Unité de génétique et physiologie de l’audition, INSERM UMRS1120, Institut Pasteur, 75015, Paris, France, 5 Faculté des sciences biologiques, Université des sciences et de la technologie Houari Boumédiène, 16 Alger, Algérie, 6 Service d’ophtalmologie, CHU Frantz Fanon, 09 Blida, Algérie, 7 Service de biochimie et de biologie moléculaire, Hôpital Armand Trousseau, APHP, 75012, Paris, France, 8 Service d’ORL, CHU Frantz Fanon, 09 Blida, Algérie, 9 Service a11111 d’ORL, CHU Bab el Oued, 16 Alger, Algérie, 10 Service d’ORL, CHU Tizi Ouzou, 15 Tizi-Ouzou, Algérie, 11 INSERM UMRS 1120, Institut de la vision, Université Pierre et Marie Curie, 75005, Paris, France, 12 Collège de France, 75005, Paris, France * [email protected] OPEN ACCESS Abstract Citation: Abdi S, Bahloul A, Behlouli A, Hardelin J-P, Usher syndrome (USH) is an autosomal recessive disorder characterized by a dual sensory Makrelouf M, Boudjelida K, et al. (2016) Diversity of the Genes Implicated in Algerian Patients Affected by impairment affecting hearing and vision.
    [Show full text]
  • Impact of a Diet and Activity Health Promotion Intervention on Regional
    Hibler et al. Clinical Epigenetics (2019) 11:133 https://doi.org/10.1186/s13148-019-0707-0 RESEARCH Open Access Impact of a diet and activity health promotion intervention on regional patterns of DNA methylation Elizabeth Hibler1* , Lei Huang2, Jorge Andrade2,3 and Bonnie Spring1 Abstract Background: Studies demonstrate the impact of diet and physical activity on epigenetic biomarkers, specifically DNA methylation. However, no intervention studies have examined the combined impact of dietary and activity changes on the blood epigenome. The objective of this study was to examine the impact of the Make Better Choices 2 (MBC2) healthy diet and activity intervention on patterns of epigenome-wide DNA methylation. The MBC2 study was a 9-month randomized controlled trial among adults aged 18–65 with non-optimal levels of health behaviors. The study compared three 12-week interventions to (1) simultaneously increase exercise and fruit/ vegetable intake, while decreasing sedentary leisure screen time; (2) sequentially increase fruit/vegetable intake and decrease leisure screen time first, then increase exercise; (3) increase sleep and decrease stress (control). We collected blood samples at baseline, 3 and 9 months, and measured DNA methylation using the Illumina EPIC (850 k) BeadChip. We examined region-based differential methylation patterns using linear regression models with the false discovery rate of 0.05. We also conducted pathway analysis using gene ontology (GO), KEGG, and IPA canonical pathway databases. Results: We found no differences between the MBC2 population (n = 340) and the subsample with DNA methylation measured (n = 68) on baseline characteristics or the impact of the intervention on behavior change.
    [Show full text]
  • Supplementary Materials
    Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine
    [Show full text]
  • Homology Modeling and Global Computational Mutagenesis of Human Myosin Viia
    Journal of Analytical & Pharmaceutical Research Research Article Open Access Homology modeling and global computational mutagenesis of human myosin VIIa Abstract Volume 10 Issue 1 - 2021 Usher syndrome type 1B (USH1B) is a genetic disorder caused by mutations in the Annapurna Kuppa, Yuri V Sergeev unconventional Myosin VIIa (MYO7A) protein. USH1B is characterized by hearing loss Ophthalmic Genetics and Visual Function Branch, National Eye due to abnormalities in the inner ear and vision loss due to retinitis pigmentosa. Here, Institute, National Institutes of Health, Bethesda, United States we present the model of human MYO7A homodimer, built using homology modeling, and refined using 5 ns molecular dynamics in water. Global computational mutagenesis Correspondence: Yuri V. Sergeev, Ophthalmic Genetics was applied to evaluate the effect of missense mutations that are critical for maintaining and Visual Function Branch, National Eye Institute, National protein structure and stability of MYO7A in inherited eye disease. We found that 43.26% Institutes of Health, Bethesda, MD, United States, (77 out of 178 in HGMD) and 41.9% (221 out of 528 in ClinVar) of the disease-related Email missense mutations were associated with higher protein structure destabilizing effects. Overall, most mutations destabilizing the MYO7A protein were found to associate with Received: February 20, 2021 | Published: March 04, 2021 USH1 and USH1B. Particularly, motor domain and MyTH4 domains were found to be most susceptible to mutations causing the USH1B phenotype. Our work contributes to the understanding of inherited disease from the atomic level of protein structure and analysis of the impact of genetic mutations on protein stability and genotype-to-phenotype relationships in human disease.
    [Show full text]
  • Foraging Shifts and Visual Pre Adaptation in Ecologically Diverse Bats
    See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/340654059 Foraging shifts and visual preadaptation in ecologically diverse bats Article in Molecular Ecology · April 2020 DOI: 10.1111/mec.15445 CITATIONS READS 0 153 9 authors, including: Kalina T. J. Davies Laurel R Yohe Queen Mary, University of London Yale University 40 PUBLICATIONS 254 CITATIONS 24 PUBLICATIONS 93 CITATIONS SEE PROFILE SEE PROFILE Edgardo M. Rengifo Elizabeth R Dumont University of São Paulo University of California, Merced 13 PUBLICATIONS 28 CITATIONS 115 PUBLICATIONS 3,143 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Ecology of the Greater horseshoe bat View project BAT 1K View project All content following this page was uploaded by Liliana M. Davalos on 14 May 2020. The user has requested enhancement of the downloaded file. Received: 17 October 2019 | Revised: 28 February 2020 | Accepted: 31 March 2020 DOI: 10.1111/mec.15445 ORIGINAL ARTICLE Foraging shifts and visual pre adaptation in ecologically diverse bats Kalina T. J. Davies1 | Laurel R. Yohe2,3 | Jesus Almonte4 | Miluska K. R. Sánchez5 | Edgardo M. Rengifo6,7 | Elizabeth R. Dumont8 | Karen E. Sears9 | Liliana M. Dávalos2,10 | Stephen J. Rossiter1 1School of Biological and Chemical Sciences, Queen Mary University of London, London, UK 2Department of Ecology and Evolution, State University of New York at Stony Brook, Stony Brook, USA 3Department of Geology & Geophysics, Yale University,
    [Show full text]
  • Analysis and Functional Evaluation of the Hair-Cell Transcriptome
    Analysis and functional evaluation of the hair-cell transcriptome Brian M. McDermott, Jr.*, Jessica M. Baucom, and A. J. Hudspeth† Howard Hughes Medical Institute and Laboratory of Sensory Neuroscience, The Rockefeller University, 1230 York Avenue, New York, NY 10021-6399 Contributed by A. J. Hudspeth, May 17, 2007 (sent for review March 31, 2007) An understanding of the molecular bases of the morphogenesis, ciated from the lagena, a receptor organ of the zebrafish’s ear. organization, and functioning of hair cells requires that the genes Linear amplification of the RNA from 200 hair cells yielded Ϸ40 expressed in these cells be identified and their functions ascer- ␮g of aRNA, an enhancement of Ϸ1 millionfold. The resultant tained. After purifying zebrafish hair cells and detecting mRNAs labeled aRNA was hybridized to an Affymetrix microarray with oligonucleotide microarrays, we developed a subtractive (Affymetrix, Santa Clara, CA) containing Ϸ15,000 oligonucle- strategy that identified 1,037 hair cell-expressed genes whose otide probe sets. Averaging the outcomes of three experiments cognate proteins subserve functions including membrane trans- (SI Data Set 1) resulted in the identification of 6,472 transcripts port, synaptic transmission, transcriptional control, cellular adhe- scored as ‘‘present’’ (SI Data Set 2). sion and signal transduction, and cytoskeletal organization. To In the second step, we defined the transcriptome from cells of assess the validity of the subtracted hair-cell data set, we verified a nonsensory organ, the liver (SI Data Set 1). Hepatocytes were the presence of 11 transcripts in inner-ear tissue. Functional eval- selected for the subtraction process for three reasons: they are uation of two genes from the subtracted data set revealed their nonneuronal and thus unlikely to express synaptic factors; they importance in hair bundles: zebrafish larvae bearing the seahorse lack cilia (http://members.global2000.net/bowser/cilialist.html) and ift 172 mutations display specific kinociliary defects.
    [Show full text]
  • Usher Syndrome Research Update to Families
    Usher Syndrome Research Update to Families Gwenaëlle Géléoc, PhD Assistant Professor Talk outline I- What is Usher Syndrome? II- Advances in understanding the patho-physiology of Usher Syndrome III- Treatment: Strategies for restoring function I- What is Usher Syndrome? Charles Howard Usher 1865-1942 1914 Study on “the inheritance of retinitis pigmentosa” Usher syndrome causes hearing loss and retinitis pigmentosa (RP) which is responsible for night-blindness and progressive a loss of peripheral vision Many people with Usher also suffer from balance problems Usher Syndrome is the most common condition that affect hearing and vision 16-40,000 people with Usher syndrome in the US. Clinically and genetically heterogeneous Three clinical USH types: Type 1, Type 2 and Type 3 distinguished by their severity and age when signs and symptoms appear. I- What is Usher Syndrome? Locus Location Gene/protein Function USH1B 11q13.5 MYO7A/myosin VIIA IE and R: transport USH1C 11p15.1 USH1C/harmonin IE and R: scaffolding IE: tip link formation; R: periciliary USH1D 10q22.1 CDH23/cadherin 23 maintenance USH1E 21q21 −/− Unknown IE: tip link formation; R: periciliary USH1F 10q21.1 PCDH15/protocadherin 15 maintenance IE and R: scaffolding and protein USH1G 17q25.1 USH1G/SANS trafficking USH1H 15q22-23 −/− Unknown USH1J CIB2/ Calcium And Integrin 15q24 Calcium and Integrin-binding protein Binding Family Member 2 IE: ankle links formation and cochlear USH2A 1q41 USH2A/usherin development; R: periciliary maintenance IE: ankle links formation Cochlear USH2C 5q14.3 GPR98/VLGR1 development; R: periciliary maintenance IE: scaffolding and cochlear development; 11 different genes (15 USH2D 9q32-34 DFNB31/whirlin R: scaffolding0 genetic loci) have USH2 been linked to USH.
    [Show full text]
  • Novel Digenic Inheritance of PCDH15 and USH1G Underlies Profound
    Schrauwen et al. BMC Medical Genetics (2018) 19:122 https://doi.org/10.1186/s12881-018-0618-5 RESEARCHARTICLE Open Access Novel digenic inheritance of PCDH15 and USH1G underlies profound non-syndromic hearing impairment Isabelle Schrauwen1, Imen Chakchouk1, Anushree Acharya1, Khurram Liaqat2, Irfanullah3, University of Washington Center for Mendelian Genomics, Deborah A. Nickerson4, Michael J. Bamshad4,5, Khadim Shah3, Wasim Ahmad3 and Suzanne M. Leal1* Abstract Background: Digenic inheritance is the simplest model of oligenic disease. It can be observed when there is a strong epistatic interaction between two loci. For both syndromic and non-syndromic hearing impairment, several forms of digenic inheritance have been reported. Methods: We performed exome sequencing in a Pakistani family with profound non-syndromic hereditary hearing impairment to identify the genetic cause of disease. Results: We found that this family displays digenic inheritance for two trans heterozygous missense mutations, one in PCDH15 [p.(Arg1034His)] and another in USH1G [p.(Asp365Asn)]. Both of these genes are known to cause autosomal recessive non-syndromic hearing impairment and Usher syndrome. The protein products of PCDH15 and USH1G function together at the stereocilia tips in the hair cells and are necessary for proper mechanotransduction. Epistasis between Pcdh15 and Ush1G has been previously reported in digenic heterozygous mice. The digenic mice displayed a significant decrease in hearing compared to age-matched heterozygous animals. Until now no human examples have been reported. Conclusions: The discovery of novel digenic inheritance mechanisms in hereditary hearing impairment will aid in understanding the interaction between defective proteins and further define inner ear function and its interactome.
    [Show full text]
  • PDZD7-MYO7A Complex Identified in Enriched Stereocilia Membranes
    RESEARCH ARTICLE PDZD7-MYO7A complex identified in enriched stereocilia membranes Clive P Morgan1†, Jocelyn F Krey1†, M’hamed Grati2, Bo Zhao3, Shannon Fallen1, Abhiraami Kannan-Sundhari2, Xue Zhong Liu2, Dongseok Choi4,5, Ulrich Mu¨ ller3, Peter G Barr-Gillespie1* 1Oregon Hearing Research Center and Vollum Institute, Oregon Health and Science University, Portland, United States; 2Department of Otolaryngology, Miller School of Medicine, University of Miami, Miami, United States; 3Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, United States; 4OHSU-PSU School of Public Health, Oregon Health and Science University, Portland, United States; 5Graduate School of Dentistry, Kyung Hee University, Seoul, Korea Abstract While more than 70 genes have been linked to deafness, most of which are expressed in mechanosensory hair cells of the inner ear, a challenge has been to link these genes into molecular pathways. One example is Myo7a (myosin VIIA), in which deafness mutations affect the development and function of the mechanically sensitive stereocilia of hair cells. We describe here a procedure for the isolation of low-abundance protein complexes from stereocilia membrane fractions. Using this procedure, combined with identification and quantitation of proteins with mass spectrometry, we demonstrate that MYO7A forms a complex with PDZD7, a paralog of USH1C and DFNB31. MYO7A and PDZD7 interact in tissue-culture cells, and co-localize to the ankle-link region of stereocilia in wild-type but not Myo7a mutant mice. Our data thus describe a new paradigm for *For correspondence: gillespp@ the interrogation of low-abundance protein complexes in hair cell stereocilia and establish an ohsu.edu unanticipated link between MYO7A and PDZD7.
    [Show full text]
  • Determining the Causes of Recessive Retinal Dystrophy
    Determining the causes of recessive retinal dystrophy By Mohammed El-Sayed Mohammed El-Asrag BSc (hons), MSc (hons) Genetics and Molecular Biology Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Medicine September 2016 The candidate confirms that the work submitted is his own, except where work which has formed part of jointly- authored publications has been included. The contribution of the candidate and the other authors to this work has been explicitly indicated overleaf. The candidate confirms that appropriate credit has been given within the thesis where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. The right of Mohammed El-Sayed Mohammed El-Asrag to be identified as author of this work has been asserted by his in accordance with the Copyright, Designs and Patents Act 1988. © 2016 The University of Leeds and Mohammed El-Sayed Mohammed El-Asrag Jointly authored publications statement Chapter 3 (first results chapter) of this thesis is entirely the work of the author and appears in: Watson CM*, El-Asrag ME*, Parry DA, Morgan JE, Logan CV, Carr IM, Sheridan E, Charlton R, Johnson CA, Taylor G, Toomes C, McKibbin M, Inglehearn CF and Ali M (2014). Mutation screening of retinal dystrophy patients by targeted capture from tagged pooled DNAs and next generation sequencing. PLoS One 9(8): e104281. *Equal first- authors. Shevach E, Ali M, Mizrahi-Meissonnier L, McKibbin M, El-Asrag ME, Watson CM, Inglehearn CF, Ben-Yosef T, Blumenfeld A, Jalas C, Banin E and Sharon D (2015).
    [Show full text]
  • Novel USH1G Homozygous Variant and Atypical Phenotype
    Novel USH1G homozygous variant and atypical phenotype. Still Usher 1 Syndrome? Fabiana D’Esposito et al. INTRODUCTION Usher syndrome (USH, types 1 to 3: MIM276900, MIM276905, MIM605472) is a clinically and genetically heterogeneous autosomal recessive disorder (OMIM, Bonnet & El Amraoui 2012) characterised by different degrees of sensorineural hearing impairment coupled with retinitis pigmentosa. It accounts for more than a half of the cases of inherited deafblindness, with a prevalence estimated as being between 1/6000 and 1/25000 (Boughman et al. 1983, Hope et al. 1997, Spandau & Rohrschneider 2002, Kimberling et al. 2010). Although transmission is traditionally considered as autosomal recessive, digenic forms have been described (Bonnet et al. 2011). Type 1 (USH1) is the most severe form, with profound congenital hearing loss, rapidly progressing retinitis pigmentosa (usually manifesting in the first decade) and vestibular dysfunction as an added feature. USH1 represents 30%-40% of USH cases in the European population (Hope et al. 1997, Spandau et al. 2002). Through the last three decades, several USH1 loci have been identified and at present seven are the known genes related to this type of Usher syndrome, including MYO7A (USH1B), USH1C (USH1C), CDH23 (USH1D), PCDH15 (USH1F), USH1G (USH1G), CIB2 (USH1J), ESPN (USH1M) (Omim, Retnet, Ahmed et al. 2018). Mutations in various Usher genes have also been shown to cause non-syndromic deafness, non-syndromic RP and atypical USH forms (Ahmed et al. 2003). Although percentages can be very variable due to populations genetic specificity, approximately 35–39% of the observed causing mutations are found at the USH1B and USH1D loci, followed by 11% in USH1F and 7% USH1C in non-Acadian alleles, while USH1G, depending on different studies, accounts for 7% or is considered rare (Ouyang et al.
    [Show full text]