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Checklist of Calicioid Lichens and Fungi for Genera with Members in Temperate Western North America Draft: 2012-03-13
Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Checklist of Calicioid Lichens and Fungi For Genera with Members in Temperate Western North America Draft: 2012-03-13 by E. B. Peterson Calicium abietinum, EBP#4640 1 Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Genera Acroscyphus Lév. Brucea Rikkinen Calicium Pers. Chaenotheca Th. Fr. Chaenothecopsis Vainio Coniocybe Ach. = Chaenotheca "Cryptocalicium" – potentially undescribed genus; taxonomic placement is not known but there are resemblances both to Mycocaliciales and Onygenales Cybebe Tibell = Chaenotheca Cyphelium Ach. Microcalicium Vainio Mycocalicium Vainio Phaeocalicium A.F.W. Schmidt Sclerophora Chevall. Sphinctrina Fr. Stenocybe (Nyl.) Körber Texosporium Nádv. ex Tibell & Hofsten Thelomma A. Massal. Tholurna Norman Additional genera are primarily tropical, such as Pyrgillus, Tylophoron About the Species lists Names in bold are believed to be currently valid names. Old synonyms are indented and listed with the current name following (additional synonyms can be found in Esslinger (2011). Names in quotes are nicknames for undescribed species. Names given within tildes (~) are published, but may not be validly published. Underlined species are included in the checklist for North America north of Mexico (Esslinger 2011). Names are given with authorities and original citation date where possible, followed by a colon. Additional citations are given after the colon, followed by a series of abbreviations for states and regions where known. States and provinces use the standard two-letter abbreviation. Regions include: NAm = North America; WNA = western North America (west of the continental divide); Klam = Klamath Region (my home territory). For those not known from North America, continental distribution may be given: SAm = South America; EUR = Europe; ASIA = Asia; Afr = Africa; Aus = Australia. -
Cryptic Species and Species Pairs in Lichens: a Discussion on the Relationship Between Molecular Phylogenies and Morphological Characters
cryptic species:07-Cryptic_species 10/12/2009 13:19 Página 71 Anales del Jardín Botánico de Madrid Vol. 66S1: 71-81, 2009 ISSN: 0211-1322 doi: 10.3989/ajbm.2225 Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters by Ana Crespo & Sergio Pérez-Ortega Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, E-28040 Madrid, Spain [email protected], [email protected] Abstract Resumen Crespo, A. & Pérez-Ortega, S. 2009. Cryptic species and species Crespo, A. & Pérez-Ortega, S. 2009. Especies crípticas y pares de pairs in lichens: A discussion on the relationship between mole- especies en líquenes: una discusión sobre la relación entre la fi- cular phylogenies and morphological characters. Anales Jard. logenia molecular y los caracteres morfológicos. Anales Jard. Bot. Madrid 66S1: 71-81. Bot. Madrid 66S1: 71-81 (en inglés). As with most disciplines in biology, molecular genetics has re- Como en otras disciplinas, el impacto producido por la filogenia volutionized our understanding of lichenized fungi. Nowhere molecular en el conocimiento de los hongos liquenizados ha has this been more true than in systematics, especially in the de- producido avances y cambios conceptuales importantes. Esto limitation of species. In many cases, molecular research has ve- ha sido especialmente cierto en la sistemática y ha afectado de rified long-standing hypotheses, but in others, results appear to una manera muy notable en aspectos -
Orthotrichum Hallii Sull
SPECIES FACT SHEET Common Name: Hall’s Orthotrichum Scientific Name: Orthotrichum hallii Sull. & Lesq. Recent synonyms: Division: Bryophyta Class: Bryopsida Order: Orthotrichales Family: Orthotrichaceae Taxonomic Note: Substratum information is needed to identify this species. Usually sporophytes are needed to identify species within this genus, but the bistratose leaves make this one easy to distinguish. Technical Description: Plants olive-green to dark green, in 2.5 cm tall tuffs or cushions, stems sometimes branched; leaves lanceolate, acute ± obtuse; lamina bistratose, margins entire, recurved below, bistratose in the upper ½, sometimes with unistratose streaks; costa percurrent, upper medial cells irregularly rounded, 9–14m , with 1–3 small conical papillae per cell; basal cells rectangular to short-rectangular, quadrate on the margins; Autoicous, seta 0.5 – 1.0 mm long , immersed when moist to about ½ emergent when dry, oblong, oblong-ovate, stomata immersed in the middle and lower portion of the urn, strongly 8 ribbed ½ to the full length when dry; peristome double, exostome teeth 8, occasionally spilt to 16, incurved when young, spreading or rarely reflexed when old, never erect. Calyptra oblong, smooth, sparsely hairy, hairs papillose. Spores 10–17m, coarsely papillose. Distinctive characters: (1) bistratose leaves, (2) immersed stomata on an eight ribbed capsule. Similar species: Orthotrichum hallii is distinguished from other species of Orthotrichums by its bistratose leaves and oblong, 8-ribbed emergent sporophyte. Other Descriptions and illustrations: Vitt (1973), Sharp, Crum, & Eckel (1994), Lewinsky-Haapasaari & Tan (1995), Lawton (1971), Exeter et al. 2016: 128-130, Vitt (2014): 56. Life History: Few details are known about O. hallii. Protonema, bud and shoot formation are typical for all moss development. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
A Synopsis of Rhinacanthus (Acanthaceae) in Angola and Namibia
KEW BULLETIN (2018) 73: 21 ISSN: 0075-5974 (print) DOI 10.1007/S12225-018-9746-5 ISSN: 1874-933X (electronic) A synopsis of Rhinacanthus (Acanthaceae) in Angola and Namibia Iain Darbyshire1 , Leevi Nanyeni2, Frances M. Chase2 & Francisco M. P. Gonçalves3 Summary. The three species of the genus Rhinacanthus Nees occurring in Angola and Namibia are documented, including a full description of the new species R. angolensis I. Darbysh. and an expanded description of the scarce species R. kaokoensis K. Balkwill & S. D. Will. A key to their identification is provided, together with notes on their conservation status and species affinities. Key Words. conservation, Guineo-Congolian, IUCN Red List assessment, justicioid, Kaokoveld, new species, taxonomy. Introduction through a series of taxonomic papers and regional The genus Rhinacanthus Nees (in Wallich 1832:76) floristic treatments (Balkwill 1995; Darbyshire & Harris comprises 25 – 30 species, found mainly in tropical 2006;EnsermuKelbessa2006, 2009; Thulin 2006; Africa, Madagascar and the Indian Subcontinent. Within Darbyshire et al. 2010; Darbyshire 2012; Darbyshire the Acanthaceae, it is placed in the Diclipterinae et al. 2015). These works have collectively added nine clade of the “justicioid” lineage (McDade et al. 2000). new or resurrected names in African Rhinacanthus as well Rhinacanthus is morphologically similar to Justicia L. as one new record for the continent. A new species from sensu lato. It is distinguished by having the combination Sri Lanka, R. flavovirens Amaras. & Wijes., has also of a long, narrowly cylindrical corolla tube usually recently been described following studies of the genus exceeding the length of the bilabiate limb and by the in the southern Indian Subcontinent (Amarasinghe & two stamens having bithecous anthers in which the Wijesundara 2011), but further work is still much needed thecae are offset and ± oblique but, unlike in most on the Asian members of the genus. -
Macromitrium Erythrocomum (Bryophyta: Orthotrichaceae), a New Species from Tropical Queensland, Australia
Volume 20: 261–268 ELOPEA Publication date: 13 September 2017 T dx.doi.org/10.7751/telopea11730 Journal of Plant Systematics plantnet.rbgsyd.nsw.gov.au/Telopea • escholarship.usyd.edu.au/journals/index.php/TEL • ISSN 0312-9764 (Print) • ISSN 2200-4025 (Online) Macromitrium erythrocomum (Bryophyta: Orthotrichaceae), a new species from tropical Queensland, Australia Helen Ramsay1,2, Andi Cairns3 and David Meagher4 1 National Herbarium of New South Wales, The Royal Botanic Gardens and Domain Trust, Sydney NSW 2000, Australia 2 Department of Biological Sciences, Macquarie University NSW 2109 3 Centre for Tropical Biodiversity and Climate Change, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia 4 School of BioSciences, The University of Melbourne, Victoria 3010, Australia Author for correspondence: [email protected] Abstract Macromitrium erythrocomum sp. nov. is described from the Wet Tropics bioregion, Queensland, Australia. It is distinguished mainly by its large size, excurrent red costa, unusual areolation of the upper leaf lamina, short seta, hairy calyptra, peristome absent or reduced to a low basal membrane, and anisomorphic spores. A comparison is made with other Macromitrium species in the region. Introduction Dixon (1938) noted that the bryophyte flora of tropical Queensland was recognised as being of special interest to botanists, partly because of what had already been found but also because of what was yet to be discovered. Almost 80 years later, new records of bryophyte species are still being added regularly to the tropical Queensland flora. For example, additions have been made in the last few years to the moss flora in the Brachytheciaceae (Huttunen and Ignatov 2010), Stereophyllaceae (Cairns and Meagher 2014), Sematophyllaceae (Meagher and Cairns 2014), and Meteoriaceae (Meagher and Cairns 2016), and to the liverwort flora in the Lejeuneaceae (Renner 2011), Radulaceae (Renner et al. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
The Botanical Exploration of Angola by Germans During the 19Th and 20Th Centuries, with Biographical Sketches and Notes on Collections and Herbaria
Blumea 65, 2020: 126–161 www.ingentaconnect.com/content/nhn/blumea RESEARCH ARTICLE https://doi.org/10.3767/blumea.2020.65.02.06 The botanical exploration of Angola by Germans during the 19th and 20th centuries, with biographical sketches and notes on collections and herbaria E. Figueiredo1, *, G.F. Smith1, S. Dressler 2 Key words Abstract A catalogue of 29 German individuals who were active in the botanical exploration of Angola during the 19th and 20th centuries is presented. One of these is likely of Swiss nationality but with significant links to German Angola settlers in Angola. The catalogue includes information on the places of collecting activity, dates on which locations botanical exploration were visited, the whereabouts of preserved exsiccata, maps with itineraries, and biographical information on the German explorers collectors. Initial botanical exploration in Angola by Germans was linked to efforts to establish and expand Germany’s plant collections colonies in Africa. Later exploration followed after some Germans had settled in the country. However, Angola was never under German control. The most intense period of German collecting activity in this south-tropical African country took place from the early-1870s to 1900. Twenty-four Germans collected plant specimens in Angola for deposition in herbaria in continental Europe, mostly in Germany. Five other naturalists or explorers were active in Angola but collections have not been located under their names or were made by someone else. A further three col- lectors, who are sometimes cited as having collected material in Angola but did not do so, are also briefly discussed. Citation: Figueiredo E, Smith GF, Dressler S. -
Composition and Specialization of the Lichen Functional Traits in a Primeval Forest—Does Ecosystem Organization Level Matter?
Article Composition and Specialization of the Lichen Functional Traits in a Primeval Forest—Does Ecosystem Organization Level Matter? Anna Łubek 1,*, Martin Kukwa 2 , Bogdan Jaroszewicz 3 and Patryk Czortek 3 1 Division of Environmental Biology, Institute of Biology, The Jan Kochanowski University in Kielce, Uniwersytecka 7, PL-25-406 Kielce, Poland 2 Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gda´nsk, Wita Stwosza 59, PL-80-308 Gda´nsk,Poland; [email protected] 3 Białowieza˙ Geobotanical Station, Faculty of Biology, University of Warsaw, Sportowa 19, PL-17-230 Białowieza,˙ Poland; [email protected] (B.J.); [email protected] (P.C.) * Correspondence: [email protected] Abstract: Current trends emphasize the importance of the examination of the functional composition of lichens, which may provide information on the species realized niche diversity and community assembly processes, thus enabling one to understand the specific adaptations of lichens and their interaction with the environment. We analyzed the distribution and specialization of diverse mor- phological, anatomical and chemical (lichen secondary metabolites) traits in lichen communities in a close-to-natural forest of lowland Europe. We considered these traits in relation to three levels of forest ecosystem organization: forest communities, phorophyte species and substrates, in order to recognize the specialization of functional traits to different levels of the forest complexity. Traits related to the sexual reproduction of mycobionts (i.e., ascomata types: lecanoroid apothecia, lecideoid Citation: Łubek, A.; Kukwa, M.; apothecia, arthonioid apothecia, lirellate apothecia, stalked apothecia and perithecia) and asexual Jaroszewicz, B.; Czortek, P. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
A Case Study Using Cabo Verde Endemic Flora
fpls-11-00278 March 13, 2020 Time: 18:19 # 1 ORIGINAL RESEARCH published: 13 March 2020 doi: 10.3389/fpls.2020.00278 Bayesian Methods to Analyze Historical Collections in Time and Space: A Case Study Using Cabo Verde Endemic Flora Maria M. Romeiras1,2*, Mark Carine3, Maria Cristina Duarte2, Silvia Catarino1, Filipe S. Dias4,5 and Luís Borda-de-Água4,5 1 LEAF, Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia (ISA), Universidade de Lisboa, Lisbon, Portugal, 2 Centre for Ecology, Evolution and Environmental Changes (cE3c), Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Portugal, 3 Department of Life Sciences, The Natural History Museum, London, United Kingdom, 4 CIBIO/InBio, Centro de Investigação em Biodiversidade e Recursos Genéticos, Laboratório Associado, Universidade do Porto, Campus Agrário de Vairão, Vairão, Portugal, 5 CIBIO/InBio, Centro de Investigação em Biodiversidade e Recursos Genéticos, Laboratório Associado, ISA, Universidade de Lisboa, Lisbon, Portugal Biological collections, including herbarium specimens, are unique sources of biodiversity data presenting a window on the history of the development and accumulation of knowledge of a specific geographical region. Understanding how the process of Edited by: Kathleen Pryer, discovery impacts that knowledge is particularly important for oceanic islands which Duke University, United States are often characterized by both high levels of endemic diversity and high proportions of Reviewed by: threatened taxa. The archipelagos of the Macaronesian region (i.e. Azores, Canaries, Emily Meineke, Savages, Madeira, and Cabo Verde) have been the focus of attention for scientific Duke University, United States Weston Testo, expeditions since the end of the 17th century. -
Orthotrichum in Pakistan 1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Hochschulschriftenserver - Universität Frankfurt am Main Orthotrichum in Pakistan 1 Tropical Bryology 21:1-9, 2002 Orthotrichum (Orthotrichaceae, Bryopsida) in Pakistan Alfons Schäfer-Verwimp Mittlere Letten 11, D-88634 Herdwangen-Schönach, Germany Johann Peter Gruber University of Salzburg, Institute of Botany and Botanical Garden Hellbrunnerstraße 34, A-5020 Salzburg, Austria Abstract: A first critical survey of the genus Orthotrichum in Pakistan is provided. The currently known geographical distributions of the species and their ecologies within Pakistan are discussed. The bryophyte collection from Pakistan contains eight species of the genus Orthotrichum. One of these, O. obtusifolium, is reported here for the first time from that country, whilst the occurrence of the other seven species is confirmed. Pseudoleskeella tectorum, associated with O. crenulatum, is also reported here from Pakistan for the first time. Comments on the specimens and a key to allow identification of all eleven species presently known from Pakistan are provided. Introduction species, restricted to those species occurring in Pakistan and some adjacent areas. The bryophyte flora of Pakistan is very poorly known. There are only a few scattered literature In North Pakistan distribution of the genus reports, such as the checklists of the mosses of Orthotrichum is restricted to the partly open Asghar (1957) and Nishimura & Higuchi (1993, wooded, mainly northfacing ranges of the 1994), and the bibliography of Pakistan mosses Himalaya and Hindu Kush mountains by Townsend (1993). In these reports, listings of (Waziristan, Kohistan, Swat, Pakistan Northern Orthotrichum species remain incomplete.