Diatom Ooze: Ooze Clues a Bridge Data Analysis Teaching Activity ( Used with Permission
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
The Diatoms Big Significance of Tiny Glass Houses
GENERAL ¨ ARTICLE The Diatoms Big Significance of Tiny Glass Houses Aditi Kale and Balasubramanian Karthick Diatoms are unique microscopic algae having intricate cell walls made up of silica. They are the major phytoplankton in aquatic ecosystems and account for 20–25% of the oxygen release and carbon fixation in the world. Their most charac- teristic features are mechanisms they have evolved to utilize silica. Due to their distinctive adaptations and ecology, they (left) Aditi Kale is a PhD student with the are used in various fields like biomonitoring, paleoecology, Biodiversity and nanotechnology and forensics. Paleobiology group of Agharkar Research Introduction Institute. She is studying the biogeography of Diatoms (Class: Bacillariophyceae) are unique microscopic al- freshwater diatoms in gae containing silica and having distinct geometrical shapes. Western Ghats for her They are unicellular, eukaryotic and photosynthetic organisms. thesis. Their cell size ranges between 5 µm–0.5 mm. They occur in wet (right) Balasubramanian or moist places where photosynthesis is possible. Diatoms are Karthick is Scientist with Biodiversity and either planktonic (free-floating) or benthic (attached to a substra- Paleobiology group of tum) in Nature (Figure 1). The individuals are solitary or some- Agharkar Research times form colonies. Diatoms are mostly non-motile; however, Institute. His interests some benthic diatoms have a specialized raphe system1 that include diatom taxonomy and ecology, microbial secretes mucilage to attach or glide along a surface. They are also biogeography,andaquatic known to form biofilms, i. e., layers of tightly attached cells of ecology. microorganisms. Biofilms are formed on a solid surface and are often surrounded by extra-cellular fluids. -
Diatoms Shape the Biogeography of Heterotrophic Prokaryotes in Early Spring in the Southern Ocean
Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer To cite this version: Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 21 (4), pp.1452-1465. 10.1111/1462-2920.14579. hal-02383818 HAL Id: hal-02383818 https://hal.archives-ouvertes.fr/hal-02383818 Submitted on 28 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean 5 Yan Liu1, Pavla Debeljak1,2, Mathieu Rembauville1, Stéphane Blain1, Ingrid Obernosterer1* 1 Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, F-66650 10 Banyuls-sur-Mer, France 2 Department of Limnology and Bio-Oceanography, University of Vienna, A-1090 Vienna, Austria -
Sediment Activity Answer Key
Sediment Activity Answer Key 1. Were your predictions close to where calcareous and siliceous oozes actually occur? Answers vary. 2. How does your map compare with the sediment distribution map? Answers vary. 3. Which type of ooze dominates the ocean sediments, calcareous or siliceous? Why? Calcareous sediments are formed from the remains of organisms like plankton with calcium-based skeletons1, such as foraminifera, while siliceous ooze is formed from the remains of organisms with silica-based skeletons like diatoms or radiolarians. Calcareous ooze dominates ocean sediments. Organisms with calcium-based shells such as foraminifera are abundant and widely distributed throughout the world’s ocean basins –more so than silica-based organisms. Silica-based phytoplankton such as diatoms are more limited in distribution by their (higher) nutrient requirements and temperature ranges. 4. What parts of the ocean do not have calcareous ooze? What might be some reasons for this? Remember that ooze forms when remains of organisms compose more than 30% of the sediment. The edges of ocean basins bordering land tend to have a greater abundance of lithogenous sediment –sediment that is brought into the ocean by water and wind. The proportion of lithogenous sediment decreases however as you move away from the continental shelf. In nutrient rich areas such as upwelling zones in the polar and equatorial regions, silica-based organisms such as diatoms or radiolarians will dominate, making the sediments more likely to be a siliceous-based ooze. Further, factors such as depth, temperature, and pressure can affect the ability of calcium carbonate to dissolve. Areas of the ocean that lie beneath the carbonate compensation depth (CCD), below which calcium carbonate dissolves, typically beneath 4-5 km, will be dominated by siliceous ooze because calcium-carbonate-based material would dissolve in these regions. -
Exploring Bacteria Diatom Associations Using Single-Cell
Vol. 72: 73–88, 2014 AQUATIC MICROBIAL ECOLOGY Published online April 4 doi: 10.3354/ame01686 Aquat Microb Ecol FREEREE ACCESSCCESS Exploring bacteria–diatom associations using single-cell whole genome amplification Lydia J. Baker*, Paul F. Kemp Department of Oceanography, University of Hawai’i at Manoa, 1950 East West Road, Center for Microbial Oceanography: Research and Education (C-MORE), Honolulu, Hawai’i 96822, USA ABSTRACT: Diatoms are responsible for a large fraction of oceanic and freshwater biomass pro- duction and are critically important for sequestration of carbon to the deep ocean. As with most surfaces present in aquatic systems, bacteria colonize the exterior of diatom cells, and they inter- act with the diatom and each other. The ecology of diatoms may be better explained by conceptu- alizing them as composite organisms consisting of the host cell and its bacterial associates. Such associations could have collective properties that are not predictable from the properties of the host cell alone. Past studies of these associations have employed culture-based, whole-population methods. In contrast, we examined the composition and variability of bacterial assemblages attached to individual diatoms. Samples were collected in an oligotrophic system (Station ALOHA, 22° 45’ N, 158° 00’ W) at the deep chlorophyll maximum. Forty eukaryotic host cells were isolated by flow cytometry followed by multiple displacement amplification, including 26 Thalassiosira spp., other diatoms, dinoflagellates, coccolithophorids, and flagellates. Bacteria were identified by amplifying, cloning, and sequencing 16S rDNA using primers that select against chloroplast 16S rDNA. Bacterial sequences were recovered from 32 of 40 host cells, and from parallel samples of the free-living and particle-associated bacteria. -
Calcareous Soils Are Alkaline
By Mongi Zekri, Tom Obreza and Kelly Morgan alcareous soils are alkaline (pH > 7) due to the pres- ence of excess calcium carbonate (CaCO3). These soils Ccan contain from 1 percent to more than 25 percent CaCO3 by weight, with pH in the range of 7.6 to 8.4. In Florida, soil pH is usually not higher than 8.4 regardless of CaCO3 concentration. Many Florida flatwoods soils contain one or more hori- zons (layers) that are calcareous. A typical characteristic is an alkaline, loamy horizon less than 40 inches deep that can be brought to the surface during land preparation for citrus Calcareous soil in Southwest Florida planting. Increased nutritional management intensity is re- quired to successfully grow citrus on calcareous soils. Some lution of fixed P. Applied P is available to replenish the soil grove soils (e.g. ditch banks) contain considerable amounts solution for only a relatively short time before it converts to of lime rock or shell. It may not be economically justifiable less soluble forms of P. To maintain P availability to citrus to plant these sites with certain rootstocks considering the on calcareous soils, water-soluble P fertilizer should be ap- management problems and costs involved. plied on a regular, but not necessarily frequent, basis. Since Citrus fertilizer management on calcareous soils differs P accumulates in the soil, it is at least partially available as from that on non-calcareous soils because the presence of it converts to less soluble compounds with time. CaCO3 directly or indirectly affects plant availability of N, Potassium (K) P, K, Calcium (Ca), Mg, Mn, Zn, Fe and Cu. -
Dive Into Oceanography with Trusted Content and Innovative Media
Dive into Oceanography with Trusted Content and Innovative Media The best-selling brief book in the oceanography market combines dynamic visuals and a student-friendly narrative to bring oceanography to life and inspire students to engage and learn more about the oceans and environments around them. The 13th edition creates an interactive learning experience, providing tightly integrated text and digital offerings that make oceanography approachable and digestible for students. An emphasis on the process of science throughout the text provides students with an understanding of how scientists think and work. It also helps students develop the scientific skills of devising experiments and interpreting data. A01_TRUJ1521_13_SE_WALK.indd 1 28/11/2018 13:12 Dive into the Process of Science GraphIt! Activities are a great way to help your students develop their understanding of graphs and data. These activities use real data to help students build science literacy skills and their understanding of how to analyze and interpret graphs. 4.5 What Are the Characteristics of Cosmogenous Sediment? 125 PROCESS OF SCIENCE 4.1: extinction, large outpourings of basaltic did not reveal any K–T deposits. Evidently, When The Dinosaurs Died: volcanic rock in India (called the Deccan the impact and resulting huge waves had Traps) and other locations had occurred. stripped the ocean floor of its sediment. The Cretaceous–Tertiary Also, if there was a catastrophic meteor However, at 1600 kilometers (1000 miles) (K–T) Event impact, where was the crater? from the impact site, the telltale sediments In the early 1990s, the 190-kilometer from the catastrophe, such as the iridium- BACKGROUND (120-mile)-wide Chicxulub (pronounced rich clay layer, were preserved in sea floor The extinction of the dinosaurs—and about “SCHICK-sue-lube”) Crater off the Yu- sediments. -
Marine Plankton Diatoms of the West Coast of North America
MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. -
(Rhizaria) to Biogenic Silica Export in the California Current Ecosystem
Global Biogeochemical Cycles RESEARCH ARTICLE The Significance of Giant Phaeodarians (Rhizaria) 10.1029/2018GB005877 to Biogenic Silica Export in the California Key Points: Current Ecosystem • Phaeodarian skeletons contain large amounts of silica (0.37–43.42 μg Si/ Tristan Biard1 , Jeffrey W. Krause2,3 , Michael R. Stukel4 , and Mark D. Ohman1 cell) that can be predicted from cell size and biovolume 1Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA, 2Dauphin Island Sea Lab, • Phaeodarian contribution to bSiO2 3 4 export from the euphotic zone Dauphin Island, AL, USA, Department of Marine Sciences, University of South Alabama, Mobile, AL, USA, Earth, Ocean, and increases substantially toward Atmospheric Science Department, Florida State University, Tallahassee, FL, USA oligotrophic regions with low total bSiO2 export • Worldwide, Aulosphaeridae alone Abstract In marine ecosystems, many planktonic organisms precipitate biogenic silica (bSiO2) to build fi may represent a signi cant proportion silicified skeletons. Among them, giant siliceous rhizarians (>500 μm), including Radiolaria and Phaeodaria, of bSiO2 export to the deep mesopelagic ocean (>500 m) are important contributors to oceanic carbon pools but little is known about their contribution to the marine silica cycle. We report the first analyses of giant phaeodarians to bSiO2 export in the California Current μ Supporting Information: Ecosystem. We measured the silica content of single rhizarian cells ranging in size from 470 to 3,920 m • Supporting Information S1 and developed allometric equations to predict silica content (0.37–43.42 μg Si/cell) from morphometric • Figure S1 measurements. Using sediment traps to measure phaeodarian fluxes from the euphotic zone on four cruises, • Figure S2 • Figure S3 we calculated bSiO2 export produced by two families, the Aulosphaeridae and Castanellidae. -
Three New Licmophora Species (Bacillariophyta: Fragilariophyceae) from Guam, Two with an Axial Wave in the Valve Ella M
Macatugal et al. Marine Biodiversity Records (2019) 12:4 https://doi.org/10.1186/s41200-019-0161-x RESEARCH Open Access Three new Licmophora species (Bacillariophyta: Fragilariophyceae) from Guam, two with an axial wave in the valve Ella M. S. Macatugal1, Bernadette G. Tharngan1 and Christopher S. Lobban2* Abstract Background: Diatoms in genus Licmophora are found as epiphytes on marine shores and are members of fouling communities. They can be abundant on natural coral reef substrates such as filamentous algae and as fringes on Halimeda. Biodiversity of benthic tropical diatoms is generally poorly known. Several new species of Licmophora have been reported from Guam but many are still undescribed. Methods: Samples of seaweeds with evident diatom coatings were collected during scuba dives, examined live, preserved in formalin, and processed with nitric acid cleaning following standard practice. Cleaned samples were examined in LM and SEM. Results: We describe two species unusual in having an axial wave in the valve, and a further long, straight species. L. repanda n. sp. and L. undulata n. sp. were of similar lengths (ca. 200 μm long) and both had axial waves but L. undulata was more slender with an inflated basal pole, had colonies on mucilage pads vs. long, single-stranded mucilage stalks. In addition, L. undulata had one apical rimoportula vs. two, elongated areolae along the midrib vs. uniform areolae, and the valvocopular advalvar striae ended halfway along, whereas in L. repanda they continued to the end. L. joymaciae n. sp. grew on long, single-stranded mucilage stalks with valves 300–400 μm long, with two apical rimoportulae, and basal pole not inflated. -
Part 629 – Glossary of Landform and Geologic Terms
Title 430 – National Soil Survey Handbook Part 629 – Glossary of Landform and Geologic Terms Subpart A – General Information 629.0 Definition and Purpose This glossary provides the NCSS soil survey program, soil scientists, and natural resource specialists with landform, geologic, and related terms and their definitions to— (1) Improve soil landscape description with a standard, single source landform and geologic glossary. (2) Enhance geomorphic content and clarity of soil map unit descriptions by use of accurate, defined terms. (3) Establish consistent geomorphic term usage in soil science and the National Cooperative Soil Survey (NCSS). (4) Provide standard geomorphic definitions for databases and soil survey technical publications. (5) Train soil scientists and related professionals in soils as landscape and geomorphic entities. 629.1 Responsibilities This glossary serves as the official NCSS reference for landform, geologic, and related terms. The staff of the National Soil Survey Center, located in Lincoln, NE, is responsible for maintaining and updating this glossary. Soil Science Division staff and NCSS participants are encouraged to propose additions and changes to the glossary for use in pedon descriptions, soil map unit descriptions, and soil survey publications. The Glossary of Geology (GG, 2005) serves as a major source for many glossary terms. The American Geologic Institute (AGI) granted the USDA Natural Resources Conservation Service (formerly the Soil Conservation Service) permission (in letters dated September 11, 1985, and September 22, 1993) to use existing definitions. Sources of, and modifications to, original definitions are explained immediately below. 629.2 Definitions A. Reference Codes Sources from which definitions were taken, whole or in part, are identified by a code (e.g., GG) following each definition. -
4. a Growth Model for Polymetallic Nodules
A GEOLOGICAL MODEL OF POLYMETALLIC NODULE DEPOSITS IN THE CLARION‐CLIPPERTON FRACTURE ZONE ISA TECHNICAL STUDY SERIES Technical Study No. 1 Global Non‐Living Resources on the Extended Continental Shelf: Prospects at the year 2000 Technical Study No. 2 Polymetallic Massive Sulphides and Cobalt‐Rich Ferromanganese Crusts: Status and Prospects Technical Study No. 3 Biodiversity, Species Ranges and Gene Flow in the Abyssal Pacific Nodule Province: Predicting and Managing the Impacts of Deep Seabed Mining Technical Study No. 4 Issues associated with the Implementation of Article 82 of the United Nations Convention on the Law of the Sea Technical Study No. 5 Non‐Living resources of the Continental Shelf beyond 200 nautical miles: Speculations on the Implementation of Article 82 of the United Nations Convention on the Law of the Sea PAGE | II A GEOLOGICAL MODEL OF POLYMETALLIC NODULE DEPOSITS IN THE CLARION‐ CLIPPERTON FRACTURE ZONE This report contains a summary of two documents – A Geological Model of Polymetallic Nodule Deposits in the Clarion‐Clipperton Fracture Zone and a Prospector’s Guide prepared under the project ‘Development of a Geological Model of Polymetallic Nodule Deposits in the Clarion‐Clipperton Fracture Zone, Pacific Ocean’. ISA TECHNICAL STUDY: NO. 6 International Seabed Authority Kingston, Jamaica PAGE | III The designation employed and the presentation of materials in this publication do not imply the expression of any opinion whatsoever on the part of the Secretariat of the International Seabed Authority concerning the legal status of any country or territory or of its authorities, or concerning the delimitation of its frontiers or maritime boundaries. All rights reserved.