DOCSLIB.ORG

6Th Symposium Program

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
6Th Symposium Program Chemical Biology Progress & Challenges May 4th, 2013 College Park, Maryland Sixth Annual Frontiers at the Chemistry‐Biology Interface Symposium University of Maryland College Park, May 4th, 2013 Organizers Herman O. Sintim and Shuwei Li (University of Maryland, College Park) Jim Fishbein (University of Maryland, Baltimore County) John Koh and Millie Sullivan (University of Delaware) Steve Rokita and Jin Zhang (Johns Hopkins University) E. James Petersson (University of Pennsylvania) Ronen Marmorstein (The Wistar Institute) Sponsors Department of Chemistry The Wistar Institute University of Pennsylvania Department of Chemistry and Biochemistry University of Delaware School of Medicine, Department of Pharmacology Johns Hopkins University Department of Chemistry Chemistry-Biology Interface Training Program John Hopkins University Johns Hopkins University Department of Chemistry and Biochemistry University of Maryland, Baltimore County Department of Chemistry and Biochemistry University of Maryland, College Park ACS Chemical Biology 1 Sixth Annual Frontiers at the Chemistry‐Biology Interface Symposium University of Maryland College Park, May 4th, 2013 Program Schedule 8:00-9:00 Pick up name tag, breakfast and set up posters 9:00-10:45 AM, Session I 9:00-9:05 am Introduction byChair: UMD DepartmentJames Petersson Chair, (University Michael Doyle of Pennsylvania) 9:00-9:05 Welcome Message by UMD Department Chair, Michael Doyle 9:05-9:10 Introduction by Chair of the Organizing Committee, Herman Sintim 9:10-9:35 Ben L. Feringa (University of Groningen) Exploring Chiral Space in Asymmetric Catalysis 9:35-10:00 Alex Deiters (North Carolina State University) Synthetic Chemical Tools for the Regulation of Cellular Processes 10:00-10:20 Jason Kahn (Poster speaker, University of Maryland College Park) Rationally Designed Coiled‐coil DNA Looping Peptides Control DNA Topology 10:20-10:45 Barbara Gerratana (National Institute of Health) Navigating the NIH Funding Process 10:45-11:00 AM, Coffee Break 11:00-12:15 PM, Session II Chair: Catherine Grimes (University of Delaware) 11:00-11:25 David Chenoweth (University of Pennsylvania) Structure Specific Nucleic Acid Targeting 11:25-11:50 Bruce Yu (University of Maryland Baltimore) Develop Fluorinated Dendrimers for 19F MRI 11:50-12:15 Tanakari Inoue (John Hopkins University) Total Synthesis of Chemotaxis 12:15-1:50 PM, Lunch and Poster 1:50-3:25 PM, Session III Chair: Herman Sintim (University of Maryland, College Park) 1:50-2:15 Cynthia Dowd (George Washington University) Dxr Inhibitors to Combat Mycobacterium tuberculosis 2:15-2:40 Catherine Grimes (University of Delaware) Chemical Tools to Study the Activation of the Intracellular Innate Immune Protein Nod2 2:40-3:00 Meiyao Wang (Poster speaker, National Institute of Standards and Technology) Absolute Quantification and Isoforms Differentiation of Membrane‐Associated Proteins Using Multiple Reaction Monitoring Mass Spectrometry and Isotope Labeled Full‐Length Protein Standards 3:00-3:25 Christian Melander (North Carolina State University) Small Molecule Suppression of Antibiotic Resistance 2 Sixth Annual Frontiers at the Chemistry‐Biology Interface Symposium University of Maryland College Park, May 4th, 2013 3:25-3:40 PM, Coffee Break 3:40-5:30 PM, Session IV Chair: Shuwei Li (University of Maryland, College Park) 3:40-4:05 Hui Zhang (Johns Hopkins University) Glycomic Analysis Using Solid-Phase Glycan Extraction and Mass Spectrometry 4:05-4:30 Jeff Gildersleeve (National Cancer Institute) Carbohydrate-Binding Serum Antibodies as Biomarkers for Personalized Medicine 4:30-5:30 Gerald Hart (Keynote Speaker, John Hopkins University) Glycomics Reveals Extensive Crosstalk Between O-GlcNAcylation and Other PTMs: Roles in Signaling, Transcription and Chronic Disease 5:30-5:40 PM, Presentation of Poster Prizes and Closing Remarks Herman Sintim (University of Maryland, College Park) 3 Sixth Annual Frontiers at the Chemistry‐Biology Interface Symposium University of Maryland College Park, May 4th, 2013 Posters (in alphabetic order by the presenter's last name) 1. Presenter: Ara Abramyan, University of the Sciences Complete List of Authors: Ara Abramyan, Zhiwei Liu, Vojislava Pophristic Title: "Molecular Dynamics Investigation of DNA-binding Foldamers" "Foldamers are synthetically derived oligomers inspired by the structures of biopolymers. Some of these oligomers have been programmed to selectively recognize specific sequences in DNA. A number of human cancers are caused by dysregulation of transcription factors leading to an anomalous gene expression. Therefore ligands that are capable of binding DNA sequences and interrupting transcription factor-DNA interactions are of a great interest. We apply molecular dynamics methods to study oligoamides experimentally shown to bind to the DNA minor groove. We analyze structural changes in DNA upon oligoamide binding as well as the influence of various chemical and structural changes in a series of oligoamides. Particularly, we discuss how the presence and position of positively charged amino group on oligoamides' turn unit perturbs the DNA sequence of interest. Our aim is to design an oligoamide with improved affinity and selectivity for further experimental studies. " 2. Presenter: Smriti Agrawal, University of Delaware Complete List of Authors: "Smriti A. Agrawal, Atul Kakrana, David Scheiblin, Christine A. Dang, Stephanie M. Waters, Abhyudai Singh, Hozumi Motohashi, Salil A. Lachke" Title: "Deficiency of small Maf family transcription factors MafG and MafK disrupts gene regulation in the lens and causes cataract" "The ocular lens is a transparent tissue that functions to focus light on the retina and is critical for providing us with high-resolution vision. Loss of lens transparency, which occurs due to genetic changes or aging, results in a disease called “cataract” – the leading cause of blindness worldwide. To devise strategies to delay or prevent cataract formation, it is critical to first understand how the lens develops and maintains transparency. We used a bioinformatics approach, iSyTE (integrated System Tool for Eye gene discovery) to identify the small Maf (musculoaponeurotic fibrosarcoma) family gene MafG as a potential regulator in the lens. The Maf gene family encodes basic leucine zipper transcription regulators that are classified into “large” and “small” MAF subgroups. Although mutations in the large Maf family gene Maf (c-Maf) are associated with human congenital cataracts, the function of the small Maf subgroup proteins MafG, MafK, and MafF in the lens remains uncharacterized. Our expression analysis confirmed iSyTE’s prediction that MafG is highly enriched in both embryonic and adult lens tissue. We also detected MafK expression in the lens although at significantly lower levels. To test the function of these small Maf genes in the lens, we generated and characterized mouse mutants that carry various combinations of MafG and MafK null alleles. These analyses demonstrate that Mafg-/-:Mafk+/- compound mutants exhibit severe lens defects starting at 2 months and develop distinct pre-senile cataract at age 6 months. To identify the target genes of these transcriptional regulators, we performed whole genome transcript profiling by microarrays on lenses from control and Mafg-/-:Mafk+/- mutant mice. These analyses indicate that expression of the heat shock protein gene Hspb1(Hsp27), a heme oxygenase gene Hmox1(Hsp32) and a novel gene Ttc27 are differentially regulated in Mafg-/-:Mafk+/- compound mutant lenses. Interestingly, Hspb1 is found to directly interact with and stabilize lens crystallin proteins Crystallin alpha A and Crystallin alpha B, which are necessary for lens transparency. Hspb1 is also found to be downregulated in mouse lenses carrying homozygous null mutations of the RNA granule component gene Tdrd7, deficiency of which in mouse or human causes cataract. Collectively, our data have identified and characterized a new role for MafG and MafK in controlling lens fiber cell gene expression, and demonstrated that deficiency of these proteins in mouse results in cataract. " 3. Presenter: Solongo Batjargal, University of Pennsylvania Complete List of Authors: "Solongo Batjargal, E. James Petersson" Title: "Labeling Proteins with Fluorophore/Thioamide FRET Pairs" 4 Sixth Annual Frontiers at the Chemistry‐Biology Interface Symposium University of Maryland College Park, May 4th, 2013 "A thioamide, the substitution of a carbonyl oxygen with a sulfur in the peptide backbone, is capable of quenching the fluorescence of p-cyanophenylalanine (Cnf) in a distant dependent fashion. The combination of native chemical ligation and unnatural amino acid (UAA) mutagenesis can be used to generate a thioamide/Cnf FRET pair in a protein. We recently have shown that a thioamide containing full-sized protein can be generated by ligating N-terminal Cys protein expressed in E. Coli and thioamide-containing peptide thioester. This method locates the thioamide in the N-terminal region of the protein. To insert thioamides at the C-terminus, we demonstrate that the intein fusion constructs can be employed to generate a protein thioester. The use of UAA mutagenesis and intein fusion permits us to obtain a Cnf-labeled protein thioester fragment which then can be ligated to a thioamide- labeled peptide synthesized on solid phase. This combination of methods allows for quick access to double-labeled proteins with site-specificity." 4. Presenter: Petrina Boucher, University of Maryland Complete List of Authors:
Load more

Recommended publications
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • Oxidative Stress and Antioxidant Status in Hypo- and Hyperthyroidism
    Chapter 8 Oxidative Stress and Antioxidant Status in Hypo- and Hyperthyroidism Mirela Petrulea, Adriana Muresan and Ileana Duncea Additional information is available at the end of the chapter http://dx.doi.org/10.5772/51018 1. Introduction Thyroid hormones are involved in the regulation of basal metabolic state and in oxidative metabolism [1]. They can cause many changes in the number and activity of mitochondrial respiratory chain components. This may result in the increased generation of reactive oxygen species (ROS) [2,3]. Oxidative stress is a general term used to describe a state of damage caused by ROS [4]. ROS have a high reactivity potential, therefore they are toxic and can lead to oxidative damage in cellular macromolecules such as proteins, lipids and DNA [5]. In fact, the cell contains a variety of substances capable of scavenging the free radicals, protecting them from harmful effects. Among the enzymatic antioxidants, are glutathione reductase (GR), glutathione peroxydase (GPx), catalase (CAT), superoxide dismutase (SOD), while the non-enzymatic antioxidants are glutathione (GSH), vitamin E, vitamin C, β- carotene, and flavonoids [6]. When ROS generation exceeds the antioxidant capacity of cells, oxidative stress develops [7]. Life means a continuous struggle for energy, which is required to fight against entropy. The most effective way to obtain energy is oxidation. Oxidative processes predominantly occur in mitochondria [8]. On the other hand, mitochondria are the favorite targets of thyroid hormones. During thyroid hormone synthesis, there is a constant production of oxygenated water, which is absolutely indispensable for iodine intrafollicular oxidation in the presence of thyroid peroxidase. In recent years, the possible correlation between impaired thyroid gland function and reactive oxygen species has been increasingly taken into consideration [9].
    [Show full text]
  • ABSTRACT Title of Dissertation: Insight Into the Structure And
    ABSTRACT Title of dissertation: Insight into the Structure and Mechanism of Iodotyrosine Deiodinase, the First Mammalian Member of the NADH Oxidase / Flavin Reductase Superfamily James Ambrose Watson, Jr. Doctor of Philosophy, 2006 Dissertation directed by: Professor Steven E. Rokita Department of Chemistry and Biochemistry Iodotyrosine deiodinase (IYD) has remained poorly characterized for nearly 50 years in spite of its function as an iodine salvage pathway and its role in regulation of mammalian basal metabolism. IYD catalyzes the reductive deiodination of both mono- and diiodotyrosine, the iodinated side-products of thyroid hormone production. The Rokita lab previously purified IYD from porcine thyroids and identified a putative dehalogenase gene. The work in this dissertation confirms the identity of the gene that encodes IYD -1 -1 through expression in HEK293 cells (KM = 4.4 ± 1.7 µM and Vmax = 12 ± 1 nmol hr µg ) and, furthermore, identifies IYD as the first mammalian member of the NADH oxidase/flavin reductase superfamily, a protein fold previously found only in bacteria. In addition, a three- dimensional model of the NADH oxidase/flavin reductase domain of IYD was constructed based on the x-ray crystal structure coordinates (Protein Data Bank code 1ICR) of the minor nitroreductase from Escherichia coli. The model also predicts structural features of IYD, including interactions between the flavin bound to IYD and one of three conserved cysteines. To investigate the role of the NADH oxidase/flavin reductase domain plays in electron transfer, two truncation mutants were generated: IYD-NR (residues 81-285) and IYD-∆TM (residues 34-285) encoding transmembrane-domain deleted IYD.
    [Show full text]
  • Iodotyrosine Deiodinase from Selected Phyla Engineered for Bacterial Expression
    ABSTRACT Title of Document: IODOTYROSINE DEIODINASE FROM SELECTED PHYLA ENGINEERED FOR BACTERIAL EXPRESSION Jennifer Marilyn Buss Doctor of Philosophy, 2012 Directed By: Professor Steven E. Rokita Department of Chemistry and Biochemistry Iodide is a well known halogen necessary for development. The majority of iodide processing in biological systems occurs in the thyroid gland. Iodide salvage is essential to thyroid hormone metabolism and metabolic regulation. The DEHAL1 gene product iodotyrosine deiodinase (IYD) is responsible for deiodination of the mono- and diiodotyrosine byproducts of thyroid hormone synthesis (triiodothyronine and thyroxine, T3 and T4, respectively). IYD is a membrane-bound flavoprotein comprised of three domains with the catalytic domain belonging to the NADPH oxidase/flavin reductase structural superfamily. This enzyme required engineering for expression of soluble protein in E. coli and was characterized using CD spectra, kinetic rate constants, binding constants of substrates, and crystal structure. Analysis of the crystal structure of IYD indicates a dimer with an active site comprising of both monomers and orienting the C-I bond of iodotyrosine substrate stacking above the N5 of the flavin mononucleotide (FMN) required for activity. The crystal structure also identifies an active site lid that distinguishes IYD from other proteins in the NADPH oxidase/flavin reductase superfamily. Three amino acids (E153, Y157, and K178) on the active site lid form hydrogen bonding and electrostatic contacts with the zwitterionic portion of the substrate. Mutation to any of these three amino acids significantly decreases substrate-binding affinity and enzymatic activity. Homologous sequences of IYD were identified in other organisms and four sequences as representatives from their phyla were expressed in E.
    [Show full text]
  • Towards a Halophenol Dehalogenase from Iodotyrosine Deiodinase Via Computational Design
    Towards a Halophenol Dehalogenase from Iodotyrosine Deiodinase via Computational Design Zuodong Sun and Steven E. Rokita* Department of Chemistry, Johns Hopkins University, 3400 N. Charles St., Baltimore, MD, 21218 ABSTRACT: Reductive dehalogenation offers an attractive approach for removing halogenated pollutants from the environment and iodotyrosine deiodinase (IYD) may contribute to this process after it can be engineered to accept a broad range of substrates. The selectivity of IYD is controlled in part by an active site loop of approximately 26 amino acids. In the absence of substrate, the loop is disordered and only folds into a compact helix-turn-helix upon halotyrosine association. The design algorithm of Rosetta was applied to redesign this loop for response to 2-iodophenol rather than iodotyrosine. One strategy using a restricted number of substitutions for increasing the inherent stability of the helical regions failed to generate variants with the desired properties. A series of point mutations identified strong epistatic interactions that impeded adaptation of IYD. This limitation was overcome by a second strategy that placed no restrictions on side chain substitution by Rosetta. Nine representative designs containing between 14-18 substitutions over 26 contiguous sites were evaluated experimentally. The top performing catalyst (UD08) supported a 4.5-fold increase in turnover of 2-iodophenol and suppressed turnover of iodotyrosine by 2000-fold relative to the native enzyme. The active site loop of UD08 appeared less disordered than the native sequence in the absence of substrate as evident from their relative sensitivity to proteolysis. Protection from proteolysis increased 9-fold for UD08 in the presence of 2-iodophenol and nearly rivaled the equivalent response of wild type IYD to iodotyrosine.
    [Show full text]
  • Effects of Inorganic Iodide on the Intermediary Carbohydrate Metabolism of Surviving Sheep Thyroid Slices
    EFFECTS OF INORGANIC IODIDE ON THE INTERMEDIARY CARBOHYDRATE METABOLISM OF SURVIVING SHEEP THYROID SLICES William L. Green, Sidney H. Ingbar J Clin Invest. 1963;42(11):1802-1815. https://doi.org/10.1172/JCI104865. Research Article Find the latest version: https://jci.me/104865/pdf Journal of Clinical Investigation Vol. 42, No. 11, 1963 EFFECTS OF INORGANIC IODIDE ON THE INTERMEDIARY CARBOHYDRATE METABOLISM OF SURVIVING SHEEP THYROID SLICES * By WILLIAM L. GREEN t AND SIDNEY H. INGBAR t (From the Thorndike Memorial Laboratory and Second and Fourth [Harvard] Medical Services, Boston City Hospital, and the Department of Medicine, Harvard Medical School, Boston, Mass.; and the Department of Medicine, Seton Hall College of Medicine, Jersey City, N. J.) (Submitted for publication April 2, 1963; accepted July 31, 1963) The rate of hormone formation by the thyroid changes in the rate of hormone formation in- in vivo is greatly influenced by acute alterations duced by varying the availability of iodide to thy- in the concentration of inorganic iodide in the roid slices in vitro are associated with, or can be extracellular fluid. In the rat (1-3) and in man ascribed to, alterations of intermediary metabolism (4, 5), increasing concentrations of iodide in the within the thyroid. A preliminary report of these plasma are associated with increased thyroidal studies has appeared (17). uptake of iodine until a critical concentration of iodide is reached. Beyond this range, the forma- METHODS tion of hormone declines. A similar relationship Preparation of slices. Thyroid glands were obtained between extracellular iodide concentration and from freshly killed sheep and were brought from the organic iodinations occurs in vitro in slices of abattoir to the laboratory packed in ice.
    [Show full text]
  • Štítná Žláza
    Thyroid gland • Glandula thyroidea (15 - 20 g, frontal side of trachea under thyroid cartilage • Two lobes connected by thyroidal isthmus, lobus pyramidalis • Strong vascularization • Round follicles (acini) with one layer of follicular cells (T3/T4) • Cavity filled with colloid • Capillaries with fenestrations • Parafollicular (C-) cells (calcitonin) • From day 29 of gravidity (Tg), T4 – 11th week Follicles are the basic functional units of thyroid gland Iodine and hormone secretion – general view • NIS (Na+/I- symporter) • PDS (pendrin) • TPO (thyroidal peroxidase) • TG homodimers and their iodation – MIT and DIT • DUOX1 and 2 – together with TPO oxidation of iodide and transportation to TG structure • TPO - connection DIT+DIT (T4) or DIT+MIT (T3) • Pinocytosis and phagolysosomes • Deiodation of MIT and DIT – DEHAL1 (iodotyrosine dehalogenase) • Other proteins (TSHR) • Transcriptional factors (TTF-1, TTF-2, PAX8, HNF-3) Dietary iodine - Bioavailability of organic and inorganic I - ECF + Ery, saliva, gastric juice - breast milk - I- filtered with passive reabsorption 60 – 70 % Clinical relevance - loss through stool (10 – 20 mg/day) - Endemic goiter - Endemic cretinism - Highest daily intake in Japan (several mg) - In many countries on decrease – eating habits Iodine fate in follicular cells NIS DEHAL1 - Concentration of I in follicular cells -MIT and DIT, iodine recyclation - - - - Transport of other ions (TcO4 , ClO4 , SCN ) – clinical significance - Salivary glands, mammary gland, choroid plexus, gastric IYD mucosa, cytotrophoblast,
    [Show full text]
  • Comparative Kinetic Characterization of Rat Thyroid Iodotyrosine Dehalogenase and Iodothyronine Deiodinase Type 1
    385 Comparative kinetic characterization of rat thyroid iodotyrosine dehalogenase and iodothyronine deiodinase type 1 J C Solís-S, P Villalobos, A Orozco and C Valverde-R Department of Cellular and Molecular Neurobiology, Institute of Neurobiology, UNAM, Campus UNAM-UAQ Juriquilla, Queretaro, Qro 76230, Mexico (Requests for offprints should be addressed to J C Solís-S; Email: [email protected]) Abstract The initial characterization of a thyroid iodotyrosine of the two different dehalogenating enzymes has not yet dehalogenase (tDh), which deiodinates mono-iodotyrosine been clearly defined. This work compares and contrasts and di-iodotyrosine, was made almost 50 years ago, but the kinetic properties of tDh and ID1 in the rat thyroid little is known about its catalytic and kinetic properties. gland. Differential affinities for substrates, cofactors and A distinct group of dehalogenases, the so-called iodo- inhibitors distinguish the two activities, and a reaction thyronine deiodinases (IDs), that specifically remove mechanism for tDh is proposed. The results reported here iodine atoms from iodothyronines were subsequently support the view that the rat thyroid gland has a distinctive discovered and have been extensively characterized. set of dehalogenases specialized in iodine metabolism. Iodothyronine deiodinase type 1 (ID1) is highly expressed Journal of Endocrinology (2004) 181, 385–392 in the rat thyroid gland, but the co-expression in this tissue Introduction inactive intracellular THs in practically all vertebrate tissues (Köhrle 2000, Bianco et al. 2002). There seems to Iodine, the rate-limiting trace element in the biosynthesis be important species-specific differences regarding the of iodothyronines or thyroid hormones (THs), is actively expression of IDs in the thyroid gland.
    [Show full text]
  • A Potential Therapeutic Role for Angiotensin Converting Enzyme 2 in Human Pulmonary Arterial Hypertension
    ERJ Express. Published on June 14, 2018 as doi: 10.1183/13993003.02638-2017 Early View Original article A potential therapeutic role for Angiotensin Converting Enzyme 2 in human pulmonary arterial hypertension Anna R. Hemnes, Anandharajan Rathinasabapathy, Eric A. Austin, Evan L. Brittain, Erica J. Carrier, Xinping Chen, Joshua P. Fessel, Candice D. Fike, Peter Fong, Niki Fortune, Robert E. Gerszten, Jennifer A. Johnson, Mark Kaplowitz, John H. Newman, Robert Piana, Meredith E. Pugh, Todd W. Rice, Ivan M. Robbins, Lisa Wheeler, Chang Yu, James E. Loyd, James West Please cite this article as: Hemnes AR, Rathinasabapathy A, Austin EA, et al. A potential therapeutic role for Angiotensin Converting Enzyme 2 in human pulmonary arterial hypertension. Eur Respir J 2018; in press (https://doi.org/10.1183/13993003.02638-2017). This manuscript has recently been accepted for publication in the European Respiratory Journal. It is published here in its accepted form prior to copyediting and typesetting by our production team. After these production processes are complete and the authors have approved the resulting proofs, the article will move to the latest issue of the ERJ online. Copyright ©ERS 2018 Copyright 2018 by the European Respiratory Society. A potential therapeutic role for Angiotensin Converting Enzyme 2 in human pulmonary arterial hypertension Anna R. Hemnes, MD*1, Anandharajan Rathinasabapathy, PhD*1, Eric A. Austin, MD, MSCI2, Evan L. Brittain, MD, MSCI3, Erica J. Carrier, PhD1, Xinping Chen, PhD1, Joshua P. Fessel, MD, PhD1, Candice D. Fike, MD2, Peter Fong, MD3, Niki Fortune1, Robert E. Gerszten, MD4, Jennifer A. Johnson, MD1, Mark Kaplowitz2, John H.
    [Show full text]
  • Thyroid Hormone Deiodination
    THYROID HORMONE DEIODINATION PROEFSCHRIFT ter verkrijging van de graad van doctor in de Geneeskunde aan de Erasmus Universiteit Rotterdam op gezag van Rector Magnificus Prof.Dr. J. Sperna Weiland en volgens besluit van het College van Dekanen. De openbare verdediging zal plaatsvinden op woensdag 22 oktober 1980 des namiddags te 2.00 uur door THEOFILUS JOHANNES VISSER geboren te Rotterdam Promotor: Prof.Dr. G. Hennemann Coreferenten: Prof.Dr. W.C. HU:lsmann Prof.Dr. H.J. van der Molen Aan Rian, Ellen en Renske. CONTENTS page VOORWOORD 9 LIST OF ABBREVIATIONS 10 SCOPE OF THE THESIS 11 Chapter L GENERAL INTRODUCTION 13 1. 1. Thyroid hormone biosynthesis 13 1.2. Thyroid hormone action; structure-activity relationship 17 1. 3. Pathways of thyroid hormone metabolism 18 1.4. Conclusions 21 Chapter 2. THYROID HORMONE DEIODINATION - IN VIVO OBSERVATIONS 23 2. L Introduction 23 2.2. Deiodination under physiological conditons 24 2.3. Factors affecting deiodination 28 2.3.1. Inhibitors 28 2.3.1.1. Thiouracil derivatives 28 2. 3.1. 2. s-Adrenergi c antagonists 29 2.3.1.3. Glucocorticosteroids 30 2.3.1.4. Miscellaneous 31 2.3.2. Diet 34 2.3.3. Pathological conditons 38 2.3.3.1. Stress 38 2.3.3.2. Illness 39 2.4. Conclusions 40 Chapter 3. THYROID HORI~ONE OEIODINATION - IN VITRO OBSERVATIONS 42 3.1. Introduction 42 3.2. Degradation of iodothyronines with release of iodide 42 3.3. Production of specific metabolites 46 3.4. localization of deiodinase activity 48 3.5. Characteristic features of enzymatic deiodination 49 3.6.
    [Show full text]
  • SUN-DISSERTATION-2019.Pdf
    ENGINEERING IODOTYROSINE DEIODINASE TOWARDS BIOREMEDIATION OF HALOPHENOLS AND CHARACTERIZATION OF A UNIQUE THERMOPHILIC IODOTYROSINE DEIODINASE FROM Thermotoga neapolitana by Zuodong Sun A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland October 2019 © 2019 Zuodong Sun All rights reserved Abstract Iodotyrosine deiodinase (IYD) promotes reductive dehalogenation of chloro-, bromo-, and iodotyrosines (Cl-Tyr, Br-Tyr, and I-Tyr, respectively). This activity decreases dramatically for phenolic substrates lacking the zwitterion due to their inability to close an active site lid. Enhancing this activity will provide an attractive approach to bioremediation of halophenols. A combination of computational design with Rosetta, library construction and screening was employed to promote IYD’s activity towards 2-iodophenol (2IP, a model for halophenol). The lid sequence of IYD from Homo sapiens (HsIYD) was redesigned by a fixed backbone approach to stabilize lid closure in the presence of 2IP. This approach successfully yielded a variant UD08 that moderately improved 2IP deiodination by 4.5-fold compared to HsIYD. UD08 expressed a disorder-to-order transition of the lid induced by 2IP as predicted by Rosetta and verified via limited proteolysis. This resembles the induced lid closure by I-Tyr in HsIYD. IYD from Haliscomenobacter hydrossis (HhIYD), as an easy-to-work with alternative to HsIYD, was subsequently redesigned via a fixed backbone approach and a loop remodeling approach to further improve IYD-2IP interactions. Rosetta once again demonstrated stabilization of the targeted enzyme•2IP complex with loop remodeling although an active 2IP deiodinase was not generated from these approaches.
    [Show full text]
  • Inhibition of Gabrp Reduces the Differentiation of Airway Epithelial Progenitor Cells Into Goblet Cells
    EXPERIMENTAL AND THERAPEUTIC MEDICINE 22: 720, 2021 Inhibition of Gabrp reduces the differentiation of airway epithelial progenitor cells into goblet cells AN WANG1*, QIUYANG ZHANG2*, YONGMEI WANG3*, XUE LI2, KUAN LI2, YU LI2, JIANHAI WANG2, LI LI4 and HUAIYONG CHEN1,2,5 1Department of Basic Medicine, Haihe Clinical College of Tianjin Medical University; 2Key Research Laboratory for Infectious Disease Prevention for State Administration of Traditional Chinese Medicine, Tianjin Institute of Respiratory Diseases; Departments of 3Pathology and 4Respiratory Medicine, Tianjin University Haihe Hospital; 5Tianjin Key Laboratory of Lung Regenerative Medicine, Tianjin 300350, P.R. China Received September 4, 2020; Accepted March 12, 2021 DOI: 10.3892/etm.2021.10152 Abstract. Bronchial asthma is an intractable pulmonary in the organoid‑forming ability of mouse Club cells in the disease that affects millions of individuals worldwide, with the presence of Gabrp antagonist bicuculline methiodide (BMI). overproduction of mucus contributing to high morbidity and Furthermore, the RT‑qPCR results indicated that the mRNA mortality. Gamma‑aminobutyric acid (GABA) is associated levels of chloride channel accessory 3, pseudogene (Clca3p), with goblet cell hyperplasia in the lungs of primate models and mucin (Muc)5Ac and Muc5B were significantly decreased in Club cells serve as airway epithelial progenitor cells that may BMI organoid cultures. These results suggested that blocking differentiate into goblet and ciliated cells. In the present study, GABA signaling through Gabrp inhibits mouse Club cell it was investigated whether the GABAA receptor pi (Gabrp) proliferation, as well as differentiation into goblet cells. is essential for Club cell proliferation and differentiation in Therefore, targeting GABA/Gabrp signaling may represent mice.
    [Show full text]