Current Usage of Symbiosis and Associated Terminology
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Plant-Microbe Symbioses: a Continuum from Commensalism to Parasitism
UCLA UCLA Previously Published Works Title Plant-microbe symbioses: A continuum from commensalism to parasitism Permalink https://escholarship.org/uc/item/6kx779h1 Journal Symbiosis, 37(1-3) ISSN 0334-5114 Author Hirsch, Ann M. Publication Date 2004 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Symbiosis, 37 (2004) xx–xx 1 Balaban, Philadelphia/Rehovot Review article. Plant-Microbe Symbioses: A Continuum from Commensalism to Parasitism ANN M. HIRSCH Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095-1606, USA, Tel. +1-310-206-8673, Fax. +1-310-206-5413, Email. [email protected] Received October 28, 2003; Accepted January 27, 2004 Abstract Photosynthetic organisms establish symbioses with a wide range of microorganisms. This review examines the diversity of symbiotic interactions, and proposes that there is a continuum from commensalism to mutualism to pathogenesis/parasitism in plant-microbe associations. The advantage of considering commensalism, mutualism, and pathogenesis/parasitism as a continuum rather than as discrete relationships between hosts and microbes, as they have been considered in the past, is that it will motivate us to focus more on common molecular mechanisms. Keywords: ?? 1. Introduction Plants establish mutualistic, often described as symbiotic, interactions with myriad organisms, both prokaryotic and eukaryotic. Some of the most prominent photosynthetic mutualisms are illustrated in Fig. 1. Although technically not a plant symbiosis, lichens are photosynthetic and represent an excellent example of a beneficial interaction (Fig. 1A). Presented at the 4th International Symbiosis Congress, August 17–23, 2003, Halifax, Canada 0334-5114/2004/$05.50 ©2004 Balaban 2 A.M. -
Coming to Terms with a Field: Words and Concepts in Symbiosis
Symbiosis, 14 (1992) 17-31 17 Balaban, Philadelphia/Rehovot Review article Coming to Terms with a Field: Words and Concepts in Symbiosis MARY BETH SAFFO Institute of Marine Sciences, University of California Santa Cruz, CA 95064, USA Tel. ( 408) 459 4997, Fax ( 408) 459 4882 Received March 29, 1992; Accepted May 5, 1992 Abstract More than a century after de Bary (1879) adopted the term symbiosis, biolo• gists still disagree about the word's meaning. Many researchers define symbiosis in the sense of de Bary, as an intimate, outcome-independent interaction between species; others use symbiosis as a synonym for mutualistic or non-parasitic as• sociations. This varied usage arises in part from the absence of a language for describing both symbiotic and non-symbiotic mutualistic interactions; the complexity of many "mutualistic" endosymbiosesposes a particular descriptive difficulty. Expropriation of "symbiosis" to identify these mutualistic associa• tions is an understandable, but ultimately confusing, and conceptually limiting solution to this problem. Retention of the broad, outcome-independent sense of symbiosis is urged. Alternate terms, including chronic endosymbiosis, are proposed for apparently benign symbioses which are too poorly known, or too complex, to categorize comfortably as "mutualistic." In addition to outcome-independent investigations of symbiotic phenomena, questions of the evolutionary significance of symbioses are difficult, but im• portant problems. Thus, terms which address particular outcomes for host or symbiont - e.g., parasitism, commensalism and mutualism, "costs," "bene• fits," fitness, and related terms - also have a place in the language of symbiosis research. 0334-5114/92 /$03.50 ©1992 Balaban 18 M.B. SAFFO Habits of language .. -
The Symbiotic Life of Symbiodinium in the Open Ocean Within a New Species of Calcifying Ciliate (Tiarina Sp.)
The ISME Journal (2016) 10, 1424–1436 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.) Solenn Mordret1,2,5, Sarah Romac1,2, Nicolas Henry1,2, Sébastien Colin1,2, Margaux Carmichael1,2, Cédric Berney1,2, Stéphane Audic1,2, Daniel J Richter1,2, Xavier Pochon3,4, Colomban de Vargas1,2 and Johan Decelle1,2,6 1EPEP—Evolution des Protistes et des Ecosystèmes Pélagiques—team, Sorbonne Universités, UPMC Univ Paris 06, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 2CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 3Coastal and Freshwater Group, Cawthron Institute, Nelson, New Zealand and 4Institute of Marine Science, University of Auckland, Auckland, New Zealand Symbiotic partnerships between heterotrophic hosts and intracellular microalgae are common in tropical and subtropical oligotrophic waters of benthic and pelagic marine habitats. The iconic example is the photosynthetic dinoflagellate genus Symbiodinium that establishes mutualistic symbioses with a wide diversity of benthic hosts, sustaining highly biodiverse reef ecosystems worldwide. Paradoxically, although various species of photosynthetic dinoflagellates are prevalent eukaryotic symbionts in pelagic waters, Symbiodinium has not yet been reported in symbiosis within oceanic plankton, despite its high propensity for the symbiotic lifestyle. Here we report a new pelagic photosymbiosis between a calcifying ciliate host and the microalga Symbiodinium in surface ocean waters. Confocal and scanning electron microscopy, together with an 18S rDNA-based phylogeny, showed that the host is a new ciliate species closely related to Tiarina fusus (Colepidae). -
Parasitism and the Biodiversity-Functioning Relationship
TREE 2355 No. of Pages 9 Opinion Parasitism and the Biodiversity-Functioning Relationship André Frainer,1,2,* Brendan G. McKie,3 Per-Arne Amundsen,1 Rune Knudsen,1 and Kevin D. Lafferty4 Species interactions can influence ecosystem functioning by enhancing or Highlights suppressing the activities of species that drive ecosystem processes, or by Biodiversity affects ecosystem causing changes in biodiversity. However, one important class of species functioning. interactions – parasitism – has been little considered in biodiversity and eco- Biodiversity may decrease or increase system functioning (BD-EF) research. Parasites might increase or decrease parasitism. ecosystem processes by reducing host abundance. Parasites could also Parasites impair individual hosts and increase trait diversity by suppressing dominant species or by increasing affect their role in the ecosystem. within-host trait diversity. These different mechanisms by which parasites Parasitism, in common with competi- might affect ecosystem function pose challenges in predicting their net effects. tion, facilitation, and predation, could Nonetheless, given the ubiquity of parasites, we propose that parasite–host regulate BD-EF relationships. interactions should be incorporated into the BD-EF framework. Parasitism affects host phenotypes,[216_TD$IF] including changes to host morphol- Incorporating Parasitism into the BD-EF framework ogy, behavior, and physiology, which How might biodiversity (see Glossary), ecosystem functioning, and the relationships might increase intra- and interspecific between biodiversity and ecosystem functioning respond to parasitism? Parasites are ubiq- functional diversity. uitous organisms with the potential to regulate and limit host abundance [1] as well as the The effects of parasitism on host abun- ecosystem processes that such hosts influence [2,3]. -
Symbiosis: Living Together
Biology Symbiosis: Living together When different species live together in close contact, they can interact with each other in a number of different ways. In this lesson you will investigate the following: • What are the types of symbiosis? • What is parasitism? • What are the different types of parasite-host relationships? • What’s it like to be a parasite? So let’s get stuck in and start sucking the life out of this lesson! This is a print version of an interactive online lesson. To sign up for the real thing or for curriculum details about the lesson go to www.cosmosforschools.com Introduction: Symbiosis (P1) Cuckoos are known for not building their own nests. Instead these birds let someone else do all the work to build a nest, then lay their eggs there. They don’t even wait around to bring up their chicks when they hatch – they let the other birds do that too. Scientists have just discovered how they have been getting away with this for so long. While having an extra mouth to feed is a burden, it seems the cuckoos do provide something useful in exchange. While studying crows’ breeding habits in Spain, scientists saw lots of cuckoos laying eggs in crows’ nests and magpies’ nests. The magpies fought back and threw out the cuckoo eggs (if they noticed them). But the crows allowed the eggs to stay, letting them hatch and then feeding the cuckoo chicks as they grew. Curious, the scientists investigated, taking note of how well the crows with cuckoos did compared to crows without a cuckoo tenant. -
Parasitism Relationship Examples with Animals
Parasitism Relationship Examples With Animals Dotted Jessie shim very downheartedly while Maxwell remains nodous and semipermeable. Is Douglis emanatory when Zary unchurches hermaphroditically? If teleost or ashen Sid usually dispute his ironmongers flyte leftwardly or deriving kindly and bunglingly, how invigorating is Patrick? These animals with their relationship in parasitism are completely dependent on its mouth so, making them leaching out of the. Having saturated homes with rescue animals they have started rescue the animal programs. Researchers at the relationship? Symbiotic relationships between flora and fauna play that important role in the circle of approach and pollination syndrome for gardeners looking to naturescape. What next stage of parasitism examples to collect or form. For example humans give dogs food building shelter perhaps the dog provides companionship and protection This alongside an. An example relationships. Well and would but to afford more about the process and example support those species. Some examples with needs. Living closer to the sea various, other marine invertebrates such as bivalve mollusks have also established symbioses with chemosynthetic bacteria, where sulfide and example are intermediate in butter water perfusing the sediments. Google map api call the relationship with endophyte fungi because the odours of nutrients to publish articles and examples benefit from a symbiosis? The energy is utilized to synthesize organic molecules from severe carbon dioxide in vent whistle and seawater. Instead, the majority of parasites cause relatively minor except to create host. Scientists have sought to better lock the evolutionary history of bacteria residing within lice In or study will see that bacterial evolution. Microbial parasites with parasitic relationships with the parasitism examples of interaction, lice and plants and meeting are themselves. -
Exploitation: Predation, Herbivory, Parasitism & Disease • Terms
Exploitation: Predation, Herbivory, Parasitism & Disease • Terms Herbivore œ consume plants but usually do not kill them Predator œ kill and consume other organisms Parasites œ live on the tissue of host organisms, usually weakens them but does not usually kill them Parasitoid œ usually kill their host, seen mostly in organisms with rapid life cycles (insects and mites) Pathogens œ induce disease in their hosts 1 Exploitation: Predation, Herbivory, Parasitism & Disease • Parasites and Pathogens That Manipulate Host Behavior œ Parasites That Alter the Behavior of Hosts œ many parasites alter the behavior of the host to spread the parasite further • Acanthocephalans (SpineyHeaded Worms) œ Infect amphipods œ Alter amphipod behavior to make it more likely for them to be ingested by beaver, ducks and muskrats » Uninfected amphipods demonstrate negative phototaxis » Infected organisms demonstrate positive phototaxis œ this brings them closer to the surface of the water and makes them more likely to be eaten 2 Exploitation: Predation, Herbivory, Parasitism & Disease • Janice Moore (1983, 84) œ observed a complex relationship between three organisms: œ An Acanthocephalan, Plagiorhynchus cylindricans œ A terrestrial isopod, a pill bug Armadillidium vulgare, this organism serves as the intermediate host for Plagiorhynchus œ The European Starling, Sturnus vulgaris Initial observations showed that only 1% of pill bugs were infected whereas 40 % of starlings are infected œ from this she proposed that Plagiorhynchus alters the behavior of the pill -
Parasites Shape Community Structure and Dynamics in Freshwater Crustaceans Cambridge.Org/Par
Parasitology Parasites shape community structure and dynamics in freshwater crustaceans cambridge.org/par Olwyn C. Friesen1 , Sarah Goellner2 , Robert Poulin1 and Clément Lagrue1,3 1 2 Research Article Department of Zoology, 340 Great King St, University of Otago, Dunedin 9016, New Zealand; Center for Integrative Infectious Diseases, Im Neuenheimer Feld 344, University of Heidelberg, Heidelberg 69120, Germany 3 Cite this article: Friesen OC, Goellner S, and Department of Biological Sciences, CW 405, Biological Sciences Building, University of Alberta, Edmonton, Poulin R, Lagrue C (2020). Parasites shape Alberta T6G 2E9, Canada community structure and dynamics in freshwater crustaceans. Parasitology 147, Abstract 182–193. https://doi.org/10.1017/ S0031182019001483 Parasites directly and indirectly influence the important interactions among hosts such as competition and predation through modifications of behaviour, reproduction and survival. Received: 24 June 2019 Such impacts can affect local biodiversity, relative abundance of host species and structuring Revised: 27 September 2019 Accepted: 27 September 2019 of communities and ecosystems. Despite having a firm theoretical basis for the potential First published online: 4 November 2019 effects of parasites on ecosystems, there is a scarcity of experimental data to validate these hypotheses, making our inferences about this topic more circumstantial. To quantitatively Key words: test parasites’ role in structuring host communities, we set up a controlled, multigenerational Host community; parasites; population dynamics; species composition mesocosm experiment involving four sympatric freshwater crustacean species that share up to four parasite species. Mesocosms were assigned to either of two different treatments, low or Author for correspondence: high parasite exposure. We found that the trematode Maritrema poulini differentially influ- Olwyn C. -
A Realism-Based Approach to an Ontological Representation of Symbiotic Interactions Matthew Diller1* , Evan Johnson1, Amanda Hicks2 and William R
Diller et al. BMC Medical Informatics and Decision Making (2020) 20:258 https://doi.org/10.1186/s12911-020-01273-0 RESEARCH ARTICLE Open Access A realism-based approach to an ontological representation of symbiotic interactions Matthew Diller1* , Evan Johnson1, Amanda Hicks2 and William R. Hogan1 Abstract Background: The symbiotic interactions that occur between humans and organisms in our environment have a tremendous impact on our health. Recently, there has been a surge in interest in understanding the complex relationships between the microbiome and human health and host immunity against microbial pathogens, among other things. To collect and manage data about these interactions and their complexity, scientists will need ontologies that represent symbiotic interactions as they occur in reality. Methods: We began with two papers that reviewed the usage of ‘symbiosis’ and related terms in the biology and ecology literature and prominent textbooks. We then analyzed several prominent standard terminologies and ontologies that contain representations of symbiotic interactions, to determine if they appropriately defined ‘symbiosis’ and related terms according to current scientific usage as identified by the review papers. In the process, we identified several subtypes of symbiotic interactions, as well as the characteristics that differentiate them, which we used to propose textual and axiomatic definitions for each subtype of interaction. To both illustrate how to use the ontological representations and definitions we created and provide additional quality assurance on key definitions, we carried out a referent tracking analysis and representation of three scenarios involving symbiotic interactions among organisms. Results: We found one definition of ‘symbiosis’ in an existing ontology that was consistent with the vast preponderance of scientific usage in biology and ecology. -
Symbiosis in the Microbial World: from Ecology to Genome Evolution Jean-Baptiste Raina1,*, Laura Eme2, F
© 2018. Published by The Company of Biologists Ltd | Biology Open (2018) 7, bio032524. doi:10.1242/bio.032524 REVIEW Symbiosis in the microbial world: from ecology to genome evolution Jean-Baptiste Raina1,*, Laura Eme2, F. Joseph Pollock3, Anja Spang2,4, John M. Archibald5 and Tom A. Williams6,* ABSTRACT functionally diverse organisms on the planet, the microbes The concept of symbiosis – defined in 1879 by de Bary as ‘the living (which comprise bacteria, archaea and protists, as well as the together of unlike organisms’–has a rich and convoluted history in viruses that infect them), and their interactions with multicellular biology. In part, because it questioned the concept of the individual, hosts. These microbial symbioses range from metabolic symbiosis fell largely outside mainstream science and has (McCutcheon and Moran, 2012) and defensive interactions traditionally received less attention than other research disciplines. (Oliver et al., 2014) among free-living organisms, to the This is gradually changing. In nature organisms do not live in isolation complete cellular and genomic integration that occurred during but rather interact with, and are impacted by, diverse beings the endosymbiotic origins of mitochondria and chloroplasts in throughout their life histories. Symbiosis is now recognized as a eukaryotic cells (Embley and Martin, 2006; Roger et al., 2017). central driver of evolution across the entire tree of life, including, for Symbiosis provides an unparalleled route to evolutionary example, bacterial endosymbionts that provide insects with vital innovation, one that underlies some of the most important nutrients and the mitochondria that power our own cells. Symbioses transitions in the history of life. -
Simply Symbiosis! Symbiotic Relationships
(circle) Name: _______________________________________ Period : 1 4 5 6 7 Simply Symbiosis! Background The word symbiosis was first defined as “unlike organisms living together”. The relationship between these two unlike organisms can be positive, negative or neutral. There are three types of symbiotic relationships- mutualism, commensalism and parasitism. Mutualism is when both organisms benefit from each other like the African crocodile and the blackbird plover- the bird gets nutrients from left over food material in the mouth of the crocodile and the crocodile has cleaner teeth because of the bird. Commensalism is when one organism benefits from the relationship, while the other one is neither helped nor harmed. An example of commensalism is a barnacle on a whale. The barnacle gets protection and transportation to different food sources while the whale is neither helped nor harmed by the presence of the barnacle. The last example of symbiosis is parasitism. This is when one organism benefits but while doing so it is harming the other member in the relationship. A common example of this is a flea on a dog. The flea obtains nutrients and protection from the dog but the dog has an uncomfortable skin reaction because of the flea. Pre Lab Assignment Complete the concept map about symbiotic relationships using the word bank below. One benefits/One is harmed Both benefit Parasitism One benefits/One not helped nor harmed Mutualism Commensalism Symbiotic Relationships Skills Applications Concepts pg. 1 Lab Assignment Read and complete each step of the lab below. 1. Purpose: The purpose of this lab is to determine the type of symbiotic relationships between two unlike organisms found in nature. -
Unit Three Single-Celled Organisms Michelle Wood Associate Professor
Unit Three Single-celled Organisms Michelle Wood Associate Professor Department of Biology University of Oregon Ph.D. in Zoology University of Georgia Michelle attended the University of Corpus Christi where she earned B.A. degrees in Biology and Speech. After graduating from the University of Georgia with a Ph.D., she continued her work as a postdoctoral student at the University of Chicago. She studied genetics and the evolutionary ecology of recently discovered photosynthetic organisms. After her postdoc, she continued as part of the research faculty in Ecology and Evolution Department until 1990. She then moved to the University of Oregon where she is now an Associate Professor. Dr. Wood’s research interests include studying picocyanobacteria from an evolutionary viewpoint. She is looking at how these microorganisms can survive in a wide range of marine environments. For instance, in the Arabian Sea, she and her student, Nelson Sherry, found that these organisms could reproduce several times a day and reach population sizes of more than a million cells per milliliter. These were free-living picocyanobacteria that bloomed during the summer Monsoon season. In the winter she found many examples of picocyanobacteria living symbiotically with dinoflagellates. She would like the students to know that people who study the ocean are a community of creative, curious, and wonderful people. She says, “If you are a student interested in ocean science, rest assured that there are many wonderful people out here who want to help you follow your dreams.” ©Project Oceanography 75 Spring 2002 Unit Three Single-celled Organisms Unit III Single-celled Organisms On the cutting edge… Dr.