Modelling of Red Blood Cell Morphological and Deformability Changes During In-Vitro Storage
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Curvature Increases Permeability of the Plasma Membrane For
bioRxiv preprint doi: https://doi.org/10.1101/602177; this version posted April 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Curvature increases permeability of the plasma membrane for ions, water and the anti-cancer drugs cisplatin and gemcitabine Semen Yesylevskyy 1,2*, Timothée Rivel 1, Christophe Ramseyer 1 1 Laboratoire Chrono Environnement UMR CNRS 6249, Université de Bourgogne Franche- Comté, 16 route de Gray, 25030 Besançon Cedex, France. 2 Department of Physics of Biological Systems, Institute of Physics of the National Academy of Sciences of Ukraine, Prospect Nauky 46, 03028 Kyiv, Ukraine. Corresponding Author * [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/602177; this version posted April 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTARCT In this work the permeability of a model asymmetric plasma membrane, for ions, water and the anti-cancer drugs cisplatin and gemcitabine is studied by means of all-atom molecular dynamics simulations. It is shown that permeability of the membranes increases from one to three orders of magnitude upon membrane bending depending on the compound and the sign of curvature. Our results show that the membrane curvature is an important factor which should be considered during evaluation of drug translocation. TOC GRAPHICS KEYWORDS Membrane curvature, membrane permeability, molecular dynamics, plasma membrane, cisplatin, gemcitabine. 2 bioRxiv preprint doi: https://doi.org/10.1101/602177; this version posted April 8, 2019. -
Membrane Curvature, Trans-Membrane Area Asymmetry, Budding, Fission and Organelle Geometry
International Journal of Molecular Sciences Review Membrane Curvature, Trans-Membrane Area Asymmetry, Budding, Fission and Organelle Geometry Alexander A. Mironov 1,* , Anna Mironov 2, Jure Derganc 3 and Galina V. Beznoussenko 1,* 1 Department of Cell Biology, The FIRC Institute of Molecular Oncology, 20139 Milan, Italy 2 Imaging Facility, Universita Vita-Salute San Raffaele, 20132 Milan, Italy; [email protected] 3 Institute of Biophysics, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia; [email protected] * Correspondence: [email protected] (A.A.M.); [email protected] (G.V.B.) Received: 21 September 2020; Accepted: 9 October 2020; Published: 14 October 2020 Abstract: In biology, the modern scientific fashion is to mostly study proteins. Much less attention is paid to lipids. However, lipids themselves are extremely important for the formation and functioning of cellular membrane organelles. Here, the role of the geometry of the lipid bilayer in regulation of organelle shape is analyzed. It is proposed that during rapid shape transition, the number of lipid heads and their size (i.e., due to the change in lipid head charge) inside lipid leaflets modulates the geometrical properties of organelles, in particular their membrane curvature. Insertion of proteins into a lipid bilayer and the shape of protein trans-membrane domains also affect the trans-membrane asymmetry between surface areas of luminal and cytosol leaflets of the membrane. In the cases where lipid molecules with a specific shape are not predominant, the shape of lipids (cylindrical, conical, or wedge-like) is less important for the regulation of membrane curvature, due to the flexibility of their acyl chains and their high ability to diffuse. -
Structure and Dynamics of the SARS-Cov-2 Envelope Protein Monomer
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.10.434722; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Structure and dynamics of the SARS-CoV-2 envelope protein monomer Alexander Kuzmin1, Philipp Orekhov1,2, Roman Astashkin1,3, Valentin Gordeliy1,3,4,5, Ivan Gushchin1,* 1 Research Center for Molecular Mechanisms of Aging and Age-related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia 2 Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia 3 Institut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, Grenoble, France 4 Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich GmbH, Jülich, Germany 5 JuStruct: Jülich Center for Structural Biology, Forschungszentrum Jülich GmbH, Jülich, Germany. E-mail for correspondence: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.03.10.434722; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Coronaviruses, especially SARS-CoV-2, present an ongoing threat for human wellbeing. Consequently, elucidation of molecular determinants of their function and interaction with host is an important task. Whereas some of the coronaviral proteins are extensively characterized, others remain understudied. -
Morphological Study of Human Blood for Different Diseases
Research Article ISSN: 2574 -1241 DOI: 10.26717/BJSTR.2020.30.004893 Morphological Study of Human Blood for Different Diseases Muzafar Shah1*, Haseena1, Kainat1, Noor Shaba1, Sania1, Sadia1, Akhtar Rasool2, Fazal Akbar2 and Muhammad Israr3 1Centre for Animal Sciences & Fisheries, University of Swat, Pakistan 2Centre for Biotechnology and Microbiology, University of Swat, Pakistan 3Department of Forensic Sciences, University of Swat, Pakistan *Corresponding author: Muzafar Shah, Centre for Animal Sciences & Fisheries, University of Swat, Pakistan ARTICLE INFO ABSTRACT Received: August 25, 2020 The aim of our study was the screening of blood cells on the basis of morphology for different diseased with Morphogenetic characters I e. ear lobe attachment, clinodactyly Published: September 07, 2020 and tongue rolling. For this purpose, 318 blood samples were collected randomly. Samples were examined under the compound microscopic by using 100x with standard Citation: Muzafar Shah, Haseena, method. The results show 63 samples were found normal while in 255 samples, different Kainat, Noor Shaba, Sania, Sadia, et al. types of morphological changes were observed which was 68.5%, in which Bite cell 36%, Morphological Study of Human Blood for Elliptocyte 34%, Tear drop cell 30%, Schistocyte 26%, Hypochromic cell 22.5%, Irregular Different Diseases. Biomed J Sci & Tech Res contracted cell 16%, Echinocytes 15.5%, Roleaux 8%, Boat shape 6.5%, Sickle cell 5%, Keratocyte 4% and Acanthocytes 1.5%. During the screening of slides, bite cell, elliptocyte, tear drop cell, schistocytes, hypochromic cell, irregular contracted cells were found 30(1)-2020.Keywords: BJSTR.Human MS.ID.004893. blood; Diseases; frequently while echinocytes, boat shape cell, acanthocytes, sickle cells and keratocytes Morphological; Acanthocytes; Keratocyte were found rarely. -
Complete Blood Count in Primary Care
Complete Blood Count in Primary Care bpac nz better medicine Editorial Team bpacnz Tony Fraser 10 George Street Professor Murray Tilyard PO Box 6032, Dunedin Clinical Advisory Group phone 03 477 5418 Dr Dave Colquhoun Michele Cray free fax 0800 bpac nz Dr Rosemary Ikram www.bpac.org.nz Dr Peter Jensen Dr Cam Kyle Dr Chris Leathart Dr Lynn McBain Associate Professor Jim Reid Dr David Reith Professor Murray Tilyard Programme Development Team Noni Allison Rachael Clarke Rebecca Didham Terry Ehau Peter Ellison Dr Malcolm Kendall-Smith Dr Anne Marie Tangney Dr Trevor Walker Dr Sharyn Willis Dave Woods Report Development Team Justine Broadley Todd Gillies Lana Johnson Web Gordon Smith Design Michael Crawford Management and Administration Kaye Baldwin Tony Fraser Kyla Letman Professor Murray Tilyard Distribution Zane Lindon Lyn Thomlinson Colleen Witchall All information is intended for use by competent health care professionals and should be utilised in conjunction with © May 2008 pertinent clinical data. Contents Key points/purpose 2 Introduction 2 Background ▪ Haematopoiesis - Cell development 3 ▪ Limitations of reference ranges for the CBC 4 ▪ Borderline abnormal results must be interpreted in clinical context 4 ▪ History and clinical examination 4 White Cells ▪ Neutrophils 5 ▪ Lymphocytes 9 ▪ Monocytes 11 ▪ Basophils 12 ▪ Eosinophils 12 ▪ Platelets 13 Haemoglobin and red cell indices ▪ Low haemoglobin 15 ▪ Microcytic anaemia 15 ▪ Normocytic anaemia 16 ▪ Macrocytic anaemia 17 ▪ High haemoglobin 17 ▪ Other red cell indices 18 Summary Table 19 Glossary 20 This resource is a consensus document, developed with haematology and general practice input. We would like to thank: Dr Liam Fernyhough, Haematologist, Canterbury Health Laboratories Dr Chris Leathart, GP, Christchurch Dr Edward Theakston, Haematologist, Diagnostic Medlab Ltd We would like to acknowledge their advice, expertise and valuable feedback on this document. -
Curvature Effect of PE-Included Membrane on the Behavior of Cinnamycin on the Membrane
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.19.161679; this version posted June 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Curvature effect of PE-included membrane on the behavior of cinnamycin on the membrane S-R. Lee1, Y. Park2, and J-W. Park2 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.19.161679; this version posted June 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The behavior of the cinnamycin on the biomimetic membrane was studied with respect to the curvature of the phosphatidylethanolamine(PE)-included membrane with the adhesion measured by the atomic force microscope(AFM). The membrane was formed through vesicle fusion on the hydrophobic surface of the sphere spheres, which was used to define the curvature of the membrane. The hydrophobicity was generated by the reaction of alkyl-silane and analyzed with the X-ray photoelectron spectrometer. The cinnamycin, immobilized covalently to the AFM tip coated with 1-mercapto-1-undecanol that was observed inert to any adhesion to the membrane, showed that the adhesion became stronger with the increase in the curvature. The correlation between the adhesion and the curvature was linearly proportional. -
The Influence of Magnetic Fields on Selected Physiological Parameters
bioRxiv preprint doi: https://doi.org/10.1101/497990; this version posted December 17, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 The Influence of Magnetic Fields on Selected Physiological 2 Parameters of Blood and Tissues in Mice 3 Hani M. Abdelsalama and Mohammed Elywab 4 a Department of Zoology, Faculty of Science, Zagazig University 5 b Department of Biophysics, Faculty of Science, Zagazig University 6 Running title: Effect of magnetic fields on antioxidants and enzymes 7 Manuscript pages: 19, Figures: 7, Tables: 7. 8 *Corresponding author: 9 Hani M. Abdelsalam 10 Department of Zoology, Faculty of Science, Zagazig University Tel.:0020552303252 11 Tel.: +201008051012 E-mail:[email protected] 12 Co-author: 13 Mohammed Elywa E-mail: [email protected] 14 15 Abstract 16 This study aimed to highlight the influence of exposure to different applied magnetic fields (MFs) on 17 SOD, MDA and GSH levels in the liver, LDH and CPK activities in the muscle and γ-aminobutyric acid levels 18 in the brain, as well as some haematological parameters. Adult male albino Swiss mice were divided into 5 19 equal groups (n = 6), the control group (untreated) and four exposure groups that were exposed to MFs of 20, 20 40, 60 and 80 Gauss for 5 min/day for 5 days.: Exposure to MFs induced significant decreases in total GSH 21 levels and SOD activity but a significant increase in MDA levels in the liver. -
Detection of Anemia Disease Using Pso Algorithm and Lbp Texture Analysis
International Journal of Pure and Applied Mathematics Volume 120 No. 6 2018, 15-26 ISSN: 1314-3395 (on-line version) url: http://www.acadpubl.eu/hub/ Special Issue http://www.acadpubl.eu/hub/ DETECTION OF ANEMIA DISEASE USING PSO ALGORITHM AND LBP TEXTURE ANALYSIS 1S. Dhanasekaran M.E., 2Dr. N. R. Shanker Ph.D., 1Research Scholar, 2Professor/ Supervisor-Aalim Muhammed Salegh College of Engineering Department of Electronics and Communication Engineering PRIST University, Thanjavur, Tamilnadu Abstract: Nowadays, patients with anemia disease oxygen from the lungs to different parts of the body and present in the world increased by around 60-70% also to carrying maximum carbon dioxide (CO2) from respectively. The digital image processing technique has different parts of the body to lungs. successfully characterised to introduce new methods for Functional near-infrared spectroscopy (fNIRS) is disease analysis has lead to reliable systems and more utilised to differentiatethe patient with schizophrenia, and accurate for anemia disease diagnosis. This paper gives the healthy persons are based on the support vector an algorithm for the automatic detection of anemia machine (SVM) and principal component analysis disease through palm image. For solving such issues, a (PCA). Firstly, PCA is utilized to select the features on PSO algorithm and LBP texture analysis are applied for oxygenated haemoglobin (oxy-Hb) signals from the classification of palm images. There are several features different channel fNIRS data. Secondly, aextraction is are consider based on statistical analysis, i.e. mean, based on SVM is planned to separate the schizophrenia variance and entropy have been extracted. The from a healthy people. -
TOPIC 5 Lab – B: Diagnostic Tools & Therapies – Blood & Lymphatic
TOPIC 5 Lab – B: Diagnostic Tools & Therapies – Blood & Lymphatic Disorders Refer to chapter 17 and selected online sources. Refer to the front cover of Gould & Dyer for normal blood test values. Complete and internet search for videos from reliable sources on blood donations and blood tests. Topic 5 Lab - A: Blood and Lymphatic Disorders You’ll need to refer to an anatomy & physiology textbook or lab manual to complete many of these objectives. Blood Lab Materials Prepared slides of normal blood Prepared slides of specific blood pathologies Models of formed elements Plaque models of formed elements Blood typing model kits Blood Lab Objectives – by the end of this lab, students should be able to: 1. Describe the physical characteristics of blood. 2. Differentiate between the plasma and serum. 3. Identify the formed elements on prepared slides, diagrams and models and state their main functions. You may wish to draw what you see in the space provided. Formed Element Description / Function Drawing Erythrocyte Neutrophil s e t y c Eosinophils o l u n a r Basophils Leukocytes G e Monocytes t y c o l u n Lymphocytes a r g A Thrombocytes 4. Define differential white blood cell count. State the major function and expected range (percentage) of each type of white blood cell in normal blood. WBC Type Function Expected % Neutrophils Eosinophils Basophils Monocytes Lymphocytes 5. Calculation of the differential count? 6. Define and use in proper context: 1. achlorhydria 5. amyloidosis 2. acute leukemia 6. anemia 3. agnogenic myeloid metaplasia 7. autosplenectomy 4. aleukemic leukemia 8. basophilic stippling 9. -
The SARS-Coronavirus Infection Cycle: a Survey of Viral Membrane Proteins, Their Functional Interactions and Pathogenesis
International Journal of Molecular Sciences Review The SARS-Coronavirus Infection Cycle: A Survey of Viral Membrane Proteins, Their Functional Interactions and Pathogenesis Nicholas A. Wong * and Milton H. Saier, Jr. * Department of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093-0116, USA * Correspondence: [email protected] (N.A.W.); [email protected] (M.H.S.J.); Tel.: +1-650-763-6784 (N.A.W.); +1-858-534-4084 (M.H.S.J.) Abstract: Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) is a novel epidemic strain of Betacoronavirus that is responsible for the current viral pandemic, coronavirus disease 2019 (COVID- 19), a global health crisis. Other epidemic Betacoronaviruses include the 2003 SARS-CoV-1 and the 2009 Middle East Respiratory Syndrome Coronavirus (MERS-CoV), the genomes of which, particularly that of SARS-CoV-1, are similar to that of the 2019 SARS-CoV-2. In this extensive review, we document the most recent information on Coronavirus proteins, with emphasis on the membrane proteins in the Coronaviridae family. We include information on their structures, functions, and participation in pathogenesis. While the shared proteins among the different coronaviruses may vary in structure and function, they all seem to be multifunctional, a common theme interconnecting these viruses. Many transmembrane proteins encoded within the SARS-CoV-2 genome play important roles in the infection cycle while others have functions yet to be understood. We compare the various structural and nonstructural proteins within the Coronaviridae family to elucidate potential overlaps Citation: Wong, N.A.; Saier, M.H., Jr. -
Clinical Hematology 1
CLINICAL HEMATOLOGY 1 CLINICAL HEMATOLOGY Editor Gamal Abdul Hamid, MD,PhD Associate Professor Faculty of Medicine and Health Sciences University of Aden CLINICAL HEMATOLOGY 2 PREFACE Clinical Hematology, first edition is written specifically for medical students, the clinician and resident doctors in training and general practioner. It is a practical guide to the diagnosis and treatment of the most common disorders of red blood cells, white blood cells, hemostasis and blood transfusion medicine. Each disease state is discussed in terms of the pathophysiology, clinical and paraclinical features which support the diagnosis and differential diagnosis. We bring together facts, concepts, and protocols important for the practice of hematology. In addition this book is also supported with review questions and quizzes. G.A-H 2012 CLINICAL HEMATOLOGY 3 CONTENTS Preface 1. Hematopoiesis 7 2. Anemia 26 3. Iron Deficiency Anemia 32 4. Hemolytic Anemia 41 5. Sickle Cell Hemoglobinopathies 49 6. Thalassemia 57 7. Hereditary Hemolytic Anemia 63 8. Acquired Hemolytic Anemia 68 9. Macrocytic Anemia 75 10. Bone Marrow Failure, Panctopenia 87 11. Spleen 95 12. Acute Leukemia 99 13. Chronic Myeloproliferative Disorders 125 14. Chronic Lymphoproliferative Disorders 137 15. Malignant Lymphoma 147 16. Multiple Myeloma and Related Paraproteinemia 171 17. Hemorrhagic Diseases 179 18. Transfusion Medicine 201 19. Bone Marrow Transplantations 214 CLINICAL HEMATOLOGY 4 Appendices: I. Hematological Tests and Normal Values 221 II. CD Nomenclature for Leukocytes Antigen 226 III. Cytotoxic Drugs 228 IV. Drugs Used in Hematology 230 Glossary 232 Answers 246 Bibliography 247 CLINICAL HEMATOLOGY 5 CLINICAL HEMATOLOGY 6 HEMATOPOIESIS 1 All of the cells in the peripheral blood have finite life spans and thus must be renewed continuously. -
Membrane Curvature at a Glance
ß 2015. Published by The Company of Biologists Ltd | Journal of Cell Science (2015) 128, 1065–1070 doi:10.1242/jcs.114454 CELL SCIENCE AT A GLANCE Membrane curvature at a glance Harvey T. McMahon1,* and Emmanuel Boucrot2,* ABSTRACT is mediated and controlled by specialized proteins using general Membrane curvature is an important parameter in defining the mechanisms: (i) changes in lipid composition and asymmetry, (ii) morphology of cells, organelles and local membrane subdomains. partitioning of shaped transmembrane domains of integral membrane Transport intermediates have simpler shapes, being either spheres proteins or protein or domain crowding, (iii) reversible insertion of or tubules. The generation and maintenance of curvature is of central hydrophobic protein motifs, (iv) nanoscopic scaffolding by oligomerized importance for maintaining trafficking and cellular functions. It is hydrophilic protein domains and, finally, (v) macroscopic scaffolding possible that local shapes in complex membranes could help to by the cytoskeleton with forces generated by polymerization and by define local subregions. In this Cell Science at a Glance article and molecular motors. We also summarize some of the discoveries about accompanying poster, we summarize how generating, sensing and the functions of membrane curvature, where in addition to providing maintaining high local membrane curvature is an active process that cell or organelle shape, local curvature can affect processes like membrane scission and fusion as well as protein concentration