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Pseudonocardia Acaciae Sp. Nov., Isolated from Roots of Acacia Auriculiformis A
Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth. Page 1 of 2 Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth. 123 Kannika Duangmal , Arinthip Thamchaipenet , Atsuko Matsumoto and 3 Yoko Takahashi - Author Affiliations 1Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand 2Department of Genetics, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand 3Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan Correspondence Kannika Duangmal [email protected] or [email protected] Abstract A novel Gram-positive-staining actinomycete designated strain GMKU095T was isolated from surface-sterilized roots of Acacia auriculiformis A. Cunn. ex Benth. (earpod wattle). The organism produced branching mycelium. The spores were non-motile and had a spiny surface. Growth of strain GMKU095T occurred at 18– 42 °C, pH 5.0–8.0 and at NaCl concentrations up to 5 %. Whole-cell hydrolysates contained arabinose and galactose as major characteristic sugars. The diagnostic diamino acid of the peptidoglycan was meso-diaminopimelic acid. The glycan moiety of the murein contained acetyl residues. The menaquinone was MK-8(H4); mycolic acids were not detected. The G+C content of the DNA was 71.6 mol%. iso- C16 : 0 was detected as the major cellular fatty acid. Comparative studies of 16S rRNA gene sequences indicated that the strain was phylogenetically related to members of the genus Pseudonocardia. The most closely related type strain is Pseudonocardia spinosispora IMSNU 50581T , which is 96.2 % similar in 16S rRNA gene sequence. -
Pseudonocardia Pini Sp. Nov., an Endophytic Actinobacterium Isolated from Roots of the Pine Tree Callitris Preissii
Pseudonocardia Pini Sp. Nov., An Endophytic Actinobacterium Isolated From Roots of the Pine Tree Callitris Preissii Onuma Kaewkla ( [email protected] ) Mahasarakham University https://orcid.org/0000-0001-7630-7074 Christopher Milton Mathew Franco Flinders University of South Australia: Flinders University Research Article Keywords: Pseudonocardia pini sp. nov., an endophytic actinobacterium Posted Date: March 16th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-274242/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Archives of Microbiology on April 23rd, 2021. See the published version at https://doi.org/10.1007/s00203-021-02309-3. Page 1/16 Abstract A Gram positive, aerobic, actinobacterial strain with rod-shaped spores, CAP47RT, which was isolated from the surface-sterilized root of a native pine tree (Callitris preissii), South Australia is described. The major cellular fatty acid of this strain was iso-H-C16:1 and major menaquinone was MK-8(H4). The diagnostic diamino acid in the cell-wall peptidoglycan was identied as meso- diaminopimelic acid. These chemotaxonomic data conrmed the aliation of strain CAP47RT to the genus Pseudonocardia. Phylogenetic evaluation based on 16S rRNA gene sequence analysis placed this strain in the family Pseudonocardiaceae, being most closely related to Pseudonocardia xishanensis JCM 17906T (98.8%), Pseudonocardia oroxyli DSM 44984T (98.7%), Pseudonocardia thailandensis CMU-NKS-70T (98.7%), and Pseudonocardia ailaonensis DSM 44979T (97.9%). The results of the polyphasic study which contain genome comparisons of ANIb, ANIm and digital DNA-DNA hybridization revealed the differentiation of strain CAP47RT from the closest species with validated names. -
Production, Purification, and Characterization of Bioactive Metabolites Produced from Rare Actinobacteria Pseudonocardia Alni
Online - 2455-3891 Vol 9, Suppl. 3, 2016 Print - 0974-2441 Research Article PRODUCTION, PURIFICATION, AND CHARACTERIZATION OF BIOACTIVE METABOLITES PRODUCED FROM RARE ACTINOBACTERIA PSEUDONOCARDIA ALNI RABAB OMRAN1*, MOHAMMED FADHIL KADHEM2 1Department of Biology, College of Science, University of Babylon, Babel, Al-Hillah, Iraq. 2Department of Pharmacology, Ibn Hayyan College, Karbala, Iraq. Email: [email protected], [email protected] Received: 30 August 2016, Revised and Accepted: 12 September 2016 ABSTRACT Objectives: Pseudonocardia alni exhibits antimicrobial activity against tested pathogenic Staphylococcus aureus, Microsporum canis, and Trichophyton mentagrophyte. The present paper aimed to optimize various cultural conditions for antimicrobial metabolite production, purification, and characterization of the active substance. Methods: The effects of various parameters such as culture media, carbon and nitrogen sources, phosphate concentration, pH, temperature, incubation period, and agitation rate on bioactive metabolite production were studied using a flask scale with varying single parameter. The active substances were purified by adsorption chromatography using Silica gel column and Sephadex LH 20 column, and the physical, chemical, and biological properties were characterized. Results: The metabolite production by P. alni was greatly influenced by various cultural conditions. It produced high levels of the antimicrobial substance in International Streptomyces project-2 broth compared with that in potato dextrose broth. The optimum parameters for antimicrobial production from the actinobacterium occurred in the production medium consisting of glucose (1%) and tryptone (1%), 0.001 M of K2HPO4 and the bioactive production. The purified active substance had relative factor Rf=0.53 in the mobile phase of a thin layer chromatography system and 0.05M glycine at initial pH 8.5 and incubated at 30°C for 4 d in stand incubator. -
Generalized Antifungal Activity and 454-Screening of Pseudonocardia and Amycolatopsis Bacteria in Nests of Fungus-Growing Ants
Generalized antifungal activity and 454-screening SEE COMMENTARY of Pseudonocardia and Amycolatopsis bacteria in nests of fungus-growing ants Ruchira Sena,1, Heather D. Ishaka, Dora Estradaa, Scot E. Dowdb, Eunki Honga, and Ulrich G. Muellera,1 aSection of Integrative Biology, University of Texas, Austin, TX 78712; and bMedical Biofilm Research Institute, 4321 Marsha Sharp Freeway, Lubbock, TX 79407 Edited by Raghavendra Gadagkar, Indian Institute of Science, Bangalore, India, and approved August 14, 2009 (received for review May 1, 2009) In many host-microbe mutualisms, hosts use beneficial metabolites origin (12–14). Many of the ant-associated Pseudonocardia species supplied by microbial symbionts. Fungus-growing (attine) ants are show antibiotic activity in vitro against Escovopsis (13–15). A thought to form such a mutualism with Pseudonocardia bacteria to diversity of actinomycete bacteria including Pseudonocardia also derive antibiotics that specifically suppress the coevolving pathogen occur in the ant gardens, in the soil surrounding attine nests, and Escovopsis, which infects the ants’ fungal gardens and reduces possibly in the substrate used by the ants for fungiculture (16, 17). growth. Here we test 4 key assumptions of this Pseudonocardia- The prevailing view of attine actinomycete-Escovopsis antago- Escovopsis coevolution model. Culture-dependent and culture- nism is a coevolutionary arms race between antibiotic-producing independent (tag-encoded 454-pyrosequencing) surveys reveal that Pseudonocardia and Escovopsis parasites (5, 18–22). Attine ants are several Pseudonocardia species and occasionally Amycolatopsis (a thought to use their integumental actinomycetes to specifically close relative of Pseudonocardia) co-occur on workers from a single combat Escovopsis parasites, which fail to evolve effective resistance nest, contradicting the assumption of a single pseudonocardiaceous against Pseudonocardia because of some unknown disadvantage strain per nest. -
Pseudonocardia Parietis Sp. Nov., from the Indoor Environment
This is an author manuscript that has been accepted for publication in International Journal of Systematic and Evolutionary Microbiology, copyright Society for General Microbiology, but has not been copy-edited, formatted or proofed. Cite this article as appearing in International Journal of Systematic and Evolutionary Microbiology. This version of the manuscript may not be duplicated or reproduced, other than for personal use or within the rule of ‘Fair Use of Copyrighted Materials’ (section 17, Title 17, US Code), without permission from the copyright owner, Society for General Microbiology. The Society for General Microbiology disclaims any responsibility or liability for errors or omissions in this version of the manuscript or in any version derived from it by any other parties. The final copy-edited, published article, which is the version of record, can be found at http://ijs.sgmjournals.org, and is freely available without a subscription 24 months after publication. First published in: Int J Syst Evol Microbiol, 2009. 59(10) 2449-52. doi:10.1099/ijs.0.009993-0 Pseudonocardia parietis sp. nov., from the indoor environment J. Scha¨fer,1 H.-J. Busse2 and P. Ka¨mpfer1 Correspondence 1Institut fu¨r Angewandte Mikrobiologie, Justus-Liebig-Universita¨t Giessen, D-35392 Giessen, P. Ka¨mpfer Germany [email protected] 2Institut fu¨r Bakteriologie, Mykologie und Hygiene, Veterina¨rmedizinische Universita¨t, A-1210 Wien, giessen.de Austria A Gram-positive, rod-shaped, non-endospore-forming, mycelium-forming actinobacterium (04- St-002T) was isolated from the wall of an indoor environment colonized with moulds. On the basis of 16S rRNA gene sequence similarity studies, strain 04-St-002T was shown to belong to the family Pseudonocardiaceae, and to be most closely related to Pseudonocardia antarctica (99.2 %) and Pseudonocardia alni (99.1 %). -
Induction of Secondary Metabolism Across Actinobacterial Genera
Induction of secondary metabolism across actinobacterial genera A thesis submitted for the award Doctor of Philosophy at Flinders University of South Australia Rio Risandiansyah Department of Medical Biotechnology Faculty of Medicine, Nursing and Health Sciences Flinders University 2016 TABLE OF CONTENTS TABLE OF CONTENTS ............................................................................................ ii TABLE OF FIGURES ............................................................................................. viii LIST OF TABLES .................................................................................................... xii SUMMARY ......................................................................................................... xiii DECLARATION ...................................................................................................... xv ACKNOWLEDGEMENTS ...................................................................................... xvi Chapter 1. Literature review ................................................................................. 1 1.1 Actinobacteria as a source of novel bioactive compounds ......................... 1 1.1.1 Natural product discovery from actinobacteria .................................... 1 1.1.2 The need for new antibiotics ............................................................... 3 1.1.3 Secondary metabolite biosynthetic pathways in actinobacteria ........... 4 1.1.4 Streptomyces genetic potential: cryptic/silent genes .......................... -
Marine Rare Actinomycetes: a Promising Source of Structurally Diverse and Unique Novel Natural Products
Review Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products Ramesh Subramani 1 and Detmer Sipkema 2,* 1 School of Biological and Chemical Sciences, Faculty of Science, Technology & Environment, The University of the South Pacific, Laucala Campus, Private Mail Bag, Suva, Republic of Fiji; [email protected] 2 Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands * Correspondence: [email protected]; Tel.: +31-317-483113 Received: 7 March 2019; Accepted: 23 April 2019; Published: 26 April 2019 Abstract: Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products. -
Inter-Domain Horizontal Gene Transfer of Nickel-Binding Superoxide Dismutase 2 Kevin M
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.12.426412; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Inter-domain Horizontal Gene Transfer of Nickel-binding Superoxide Dismutase 2 Kevin M. Sutherland1,*, Lewis M. Ward1, Chloé-Rose Colombero1, David T. Johnston1 3 4 1Department of Earth and Planetary Science, Harvard University, Cambridge, MA 02138 5 *Correspondence to KMS: [email protected] 6 7 Abstract 8 The ability of aerobic microorganisms to regulate internal and external concentrations of the 9 reactive oxygen species (ROS) superoxide directly influences the health and viability of cells. 10 Superoxide dismutases (SODs) are the primary regulatory enzymes that are used by 11 microorganisms to degrade superoxide. SOD is not one, but three separate, non-homologous 12 enzymes that perform the same function. Thus, the evolutionary history of genes encoding for 13 different SOD enzymes is one of convergent evolution, which reflects environmental selection 14 brought about by an oxygenated atmosphere, changes in metal availability, and opportunistic 15 horizontal gene transfer (HGT). In this study we examine the phylogenetic history of the protein 16 sequence encoding for the nickel-binding metalloform of the SOD enzyme (SodN). A comparison 17 of organismal and SodN protein phylogenetic trees reveals several instances of HGT, including 18 multiple inter-domain transfers of the sodN gene from the bacterial domain to the archaeal domain. -
Pseudonocardia Asaccharolytica Sp. Nov. and Pseudonocardia Sulfidoxydans Sp
International Journal of Systematic Bacteriology (1998), 48, 441-449 Printed in Great Britain Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulf ide-degrading actinomycetes and emended description of the genus Pseudonocardia Katrin Reichert,’ Andre Lipski,’ Silke Pradella,2 Erko Stackebrandt2 and Karlheinz Altendorf’ Author for correspondence: Andre Lipski. Fax: +49 541 969 2870. e-mail : Lipski@sfbbiol .biologie.uni-osnabrueck.de 1 Abteilung Mikrobiologie, Seven bacterial strains capable of oxidizing methyl sulfides were isolated from Universitat Osnabruck, experimental biofilters filled with tree-bark compost. The isolates could be Fachbereich BiologieKhemie, D-49069 divided into two groups according to their method of methyl sulfide Osnabruck, Germany degradation. Four isolates could use only dimethyl disulfide as the sole source * Deutsche Sammlung von of energy and three strains were able to use dimethyl sulfide and dimethyl Mikroorganismen und disulfide. Oxidation of the methyl sulfides by both groups led to the Zellkulturen GmbH, stoichiometric formation of sulfate. Chemotaxonomic, morphological, Mascheroder Weg 1b, D-38124 Braunschweig, physiological and phylogenetic properties identified all isolates as members of Germany the genus Pseudonocardia. The absence of phosphatidylcholine from the polar lipid pattern, as well as results of 16s rDNA analyses, led to the proposal of two new species, Pseudonocadia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov. -
Chemical Basis of the Synergism and Antagonism in Microbial Communities in the Nests of Leaf-Cutting Ants
Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants Ilka Schoeniana, Michael Spitellerb, Manoj Ghasteb, Rainer Wirthc, Hubert Herzd, and Dieter Spitellera,1 aDepartment of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany; bInstitute of Environmental Research of the Faculty of Chemistry, Dortmund University of Technology, D-44221 Dortmund, Germany; cDepartment of Plant Ecology and Systematics, Technical University of Kaiserslautern, D-67663 Kaiserslautern, Germany; and dSmithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panamá Edited* by Jerrold Meinwald, Cornell University, Ithaca, NY, and approved November 22, 2010 (received for review June 16, 2010) Leaf-cutting ants cultivate the fungus Leucoagaricus gongylo- pected that Pseudonocardia play a crucial role in the ants’ defense phorus, which serves as a major food source. This symbiosis is against pathogens. Although isolated microbial symbionts were threatened by microbial pathogens that can severely infect L. active against Escovopsis in the agar diffusion assay (10), until re- gongylophorus. Microbial symbionts of leaf-cutting ants, mainly cently, not a single compound from the ants’ microbial symbionts Pseudonocardia and Streptomyces, support the ants in defending had been characterized. Using bioassay-guided isolation, Haeder their fungus gardens against infections by supplying antimicrobial et al. (11) identified the antifungal candicidin macrolides that and antifungal compounds. The ecological role of microorganisms in are produced by a large number of Streptomyces symbionts isolated the nests of leaf-cutting ants can only be addressed in detail if their from three different leaf-cutting ant species (A. octospinosus, secondary metabolites are known. -
Actinomycetospora Chiangmaiensis Gen. Nov., Sp. Nov., a New Member of the Family Pseudonocardiaceae
International Journal of Systematic and Evolutionary Microbiology (2008), 58, 408–413 DOI 10.1099/ijs.0.64976-0 Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae Yi Jiang,1,2 Jutta Wiese,1 Shu-Kun Tang,2 Li-Hua Xu,2 Johannes F. Imhoff1 and Cheng-Lin Jiang2 Correspondence 1Leibniz-Institut fu¨r Meereswissenschaften, IFM-GEOMAR, Du¨sternbrooker Weg 20, Johannes F. Imhoff D-24105 Kiel, Germany [email protected] 2Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, China Li-Hua Xu [email protected] A novel actinomycete strain, YIM 0006T, was isolated from soil of a tropical rainforest in northern Thailand. The isolate displayed the following characteristics: aerial mycelium is absent, short spore chains are formed directly on the substrate mycelium, contains meso-diaminopimelic acid, arabinose and galactose (cell-wall chemotype IV), the diagnostic phospholipid is phosphatidylcholine, MK-9(H4) is the predominant menaquinone and the G+C content of the genomic DNA is 69.0 mol%. Phylogenetic analysis and phenotypic characteristics showed that strain YIM 0006T belongs to the family Pseudonocardiaceae but can be distinguished from representatives of all genera classified in the family. The novel genus and species Actinomycetospora chiangmaiensis gen. nov., sp. nov. are proposed, with strain YIM 0006T (5CCTCC AA 205017T 5DSM 45062T) as the type strain of Actinomycetospora chiangmaiensis. The first description of the family Pseudonocardiaceae was the strain were determined after growth at 28 uC for given by Embley et al. (1988), and the description was 2 weeks by methods used in the International Streptomyces emended by Stackebrandt et al. -
A Genome Compendium Reveals Diverse Metabolic Adaptations of Antarctic Soil Microorganisms
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.06.239558; this version posted August 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. August 3, 2020 A genome compendium reveals diverse metabolic adaptations of Antarctic soil microorganisms Maximiliano Ortiz1 #, Pok Man Leung2 # *, Guy Shelley3, Marc W. Van Goethem1,4, Sean K. Bay2, Karen Jordaan1,5, Surendra Vikram1, Ian D. Hogg1,7,8, Thulani P. Makhalanyane1, Steven L. Chown6, Rhys Grinter2, Don A. Cowan1 *, Chris Greening2,3 * 1 Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Hatfield, Pretoria 0002, South Africa 2 Department of Microbiology, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia 3 School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia 4 Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA 5 Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Alameda 340, Santiago 6 Securing Antarctica’s Environmental Future, School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia 7 School of Science, University of Waikato, Hamilton 3240, New Zealand 8 Polar Knowledge Canada, Canadian High Arctic Research Station, Cambridge Bay, NU X0B 0C0, Canada # These authors contributed equally to this work. * Correspondence may be addressed to: A/Prof Chris Greening ([email protected]) Prof Don A. Cowan ([email protected]) Pok Man Leung ([email protected]) bioRxiv preprint doi: https://doi.org/10.1101/2020.08.06.239558; this version posted August 6, 2020.