Chemical Basis of the Synergism and Antagonism in Microbial Communities in the Nests of Leaf-Cutting Ants

Total Page:16

File Type:pdf, Size:1020Kb

Chemical Basis of the Synergism and Antagonism in Microbial Communities in the Nests of Leaf-Cutting Ants Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants Ilka Schoeniana, Michael Spitellerb, Manoj Ghasteb, Rainer Wirthc, Hubert Herzd, and Dieter Spitellera,1 aDepartment of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany; bInstitute of Environmental Research of the Faculty of Chemistry, Dortmund University of Technology, D-44221 Dortmund, Germany; cDepartment of Plant Ecology and Systematics, Technical University of Kaiserslautern, D-67663 Kaiserslautern, Germany; and dSmithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panamá Edited* by Jerrold Meinwald, Cornell University, Ithaca, NY, and approved November 22, 2010 (received for review June 16, 2010) Leaf-cutting ants cultivate the fungus Leucoagaricus gongylo- pected that Pseudonocardia play a crucial role in the ants’ defense phorus, which serves as a major food source. This symbiosis is against pathogens. Although isolated microbial symbionts were threatened by microbial pathogens that can severely infect L. active against Escovopsis in the agar diffusion assay (10), until re- gongylophorus. Microbial symbionts of leaf-cutting ants, mainly cently, not a single compound from the ants’ microbial symbionts Pseudonocardia and Streptomyces, support the ants in defending had been characterized. Using bioassay-guided isolation, Haeder their fungus gardens against infections by supplying antimicrobial et al. (11) identified the antifungal candicidin macrolides that and antifungal compounds. The ecological role of microorganisms in are produced by a large number of Streptomyces symbionts isolated the nests of leaf-cutting ants can only be addressed in detail if their from three different leaf-cutting ant species (A. octospinosus, secondary metabolites are known. Here, we use an approach for the A. echinatior,andA. volcanus). For the fungus-growing ant Apter- rapid identification of established bioactive compounds from micro- ostigma dentigerum, Oh et al. (12) reported the cyclodepsipeptide organisms in ecological contexts by combining phylogenetic data, dentigerumycin from a Pseudonocardia symbiont with activity database searches, and liquid chromatography electrospray ionisa- against E. weberi. From A. octospinosus, Barke et al. (13) detected, tion high resolution mass spectrometry (LC-ESI-HR-MS) screening. besides the presence of the previously characterized candicidin – fi Antimycins A1 A4, valinomycins, and actinomycins were identi ed polyene macrolide-producing Streptomyces (11), a Pseudono- in this manner from Streptomyces symbionts of leaf-cutting ants. cardia symbiont that produces a nystatin-like polyene macrolide. Matrix-assisted laser desorption ionization (MALDI) imaging These recent findings indicated that there are likely to be a num- revealed the distribution of valinomycin directly on the integument ber of diverse antifungal compounds yet to be identified from of Acromyrmex echinatior workers. Valinomycins and actinomycins microbial symbionts of leaf-cutting/fungus-growing ants (11–13). fi were also directly identi ed in samples from the waste of A. echi- Over the last few years, researchers have realized that the eco- natior and A. niger leaf-cutting ants, suggesting that the compounds system of leaf-cutting ants is much more complex than initially exert their antimicrobial and antifungal potential in the nests of described as a coevolution of the leaf-cutting ants, their fungus leaf-cutting ants. Strong synergistic effects of the secondary meta- garden L. gongylophorus, one microbial symbiont (Pseudono- bolites produced by ant-associated Streptomyces were observed in cardia), and one specialized fungal pathogen (Escovopsis) (14). In the agar diffusion assay against Escovopsis weberi. Actinomycins addition to the characterization of microbial antifungal compounds strongly inhibit soil bacteria as well as other Streptomyces and Pseu- (11–13) involved in mediating the interactions between the differ- donocardia symbionts. The antifungal antimycins are not only active ent partners, it has become evident that both a large number of against pathogenic fungi but also the garden fungus L. gongylopho- pathogens (2–5) pose a threat to the ants’ fungus garden and rus itself. In conclusion, secondary metabolites of microbial sym- a large diversity of microbial symbionts can be found within the bionts of leaf-cutting ants contribute to shaping the microbial ants’ nests. These symbionts fulfill diverse functions, including de- communities within the nests of leaf-cutting ants. fense against pathogens or promotion of the growth of the garden fungus (e.g., by nitrogen fixation) (10–13, 15–17). Because some chemical imaging | antibiotics | chemical defense | ecological function bacterial symbionts of leaf-cutting ants can be also detrimental to the growth of the mutualistic fungus L. gongylophorus, the one- eaf-cutting/fungus-growing ants such as Acromyrmex are sided view of leaf-cutting ants and Actinomyces symbionts as mu- Lunique among ants, because they grow the fungus Leucoa- tualistic partners of the leaf-cutting ants should be challenged (18). garicus gongylophorus (Agaricales: Leucocoprineae) with har- In order to begin to better understand the ecological role of vested leaf material in chambers of their nests (1). In turn, microorganisms associated with leaf-cutting ants, it is crucial to L. gongylophorus is their major food source. However, this obli- expose the chemistry of the individual (micro)organisms in the gate mutualistic interaction is threatened by various microbial community. Extending phylogenetic comparisons of secondary pathogens such as the fungi Escovopsis (2, 3), Fusarium (4), Syn- metabolite producers (19–21), we used a combination of phylo- cephalastrum (4), and Trichoderma (4). In addition, microorganisms genetic analysis, database screening, and electrospray ionisation from the surrounding soil or plant pathogens accidentally in- high resolution mass spectrometry (ESI-HR-MS) analysis to troduced from harvested leaf material may compete with the garden fungus for nutrients and living space (5). Therefore, leaf- CHEMISTRY cutting ants treat their fungus gardens with great care, removing Author contributions: I.S. and D.S. designed research; I.S., M.S., M.G., R.W., H.H., and D.S. any suspicious material into waste chambers (6). Besides this performed research; I.S. and D.S. analyzed data; and I.S. and D.S. wrote the paper. mechanical cleaning behavior, leaf-cutting ants make use of an- The authors declare no conflict of interest. – timicrobial chemicals (7 9); these include 3-hydroxydecanoic *This Direct Submission article had a prearranged editor. ’ acid, which is secreted from the ants metapleural glands. Data deposition: The sequences reported in this paper have been deposited in the Gen- However, in 1999, Currie et al. (10) discovered microbial sym- Bank database (accession nos. HM538453 and HM538454). fi fi 1 bionts, identi ed as Pseudonocardia, from bio lms on the in- To whom correspondence should be addressed. E-mail: [email protected]. ECOLOGY tegument of leaf-cutting ants. Because Pseudonocardia belong to This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10. the well-known antibiotic-producing Actinobacteria, it was sus- 1073/pnas.1008441108/-/DCSupplemental. www.pnas.org/cgi/doi/10.1073/pnas.1008441108 PNAS | February 1, 2011 | vol. 108 | no. 5 | 1955–1960 Downloaded by guest on September 24, 2021 rapidly identify ecologically relevant secondary metabolites from and Fig. S1). The identity of actinomycin D (1) and X2 (2) was microbial symbionts. In this way, we identified several antibiotics further confirmed by NMR and comparison with commercially and investigated their role in shaping the complex interactions in available actinomycin standards. Valinomycin (3) (28) and its the leaf-cutting ants’ ecosystem. closely related derivatives (29) were identified from the symbiont Streptomyces sp. Av25_3, revealing its high similarity to valino- Results mycin producers (Fig. 1, Table S1, and Fig. S1) such as S. anulatus Structure Elucidation of Antimicrobial and Antifungal Compounds (EU647474.1; 98.84%) (Table S1 and Fig. S1) and S. tsusimaensis from Microbial Symbionts. A variety of microbial symbionts from (EU622279; 99.21%) (Table S1 and Fig. S1) (20). Furthermore, three different Acromyrmex leaf-cutting ant species (A. octospi- we identified the well-known antifungal antimycins A1–A4 (4–7) nosus, A. echinatior, and A. volcanus) had been isolated in a pre- (30) (Fig. 1, Table S1, and Fig. S1), which are produced by mi- vious study. The symbiotic microorganisms were characterized crobial symbionts of Acromyrmex, on the basis of the high simi- using their 16S rDNA sequences for database comparison (11). larity of Streptomyces sp. Ao10 to S. albidoflavus (DQ855477.1; In addition, many more 16S rDNA sequences from microbial 99.72%) (Table S1 and Fig. S1). S. albidoflavus, which was re- symbionts of leaf-cutting ants are now available (11, 16, 22–24). cently isolated from mangroves, has been shown to produce However, because most research concerning the symbionts of antimycin A18 (31), suggesting the possible production of anti- leaf-cutting ants has focused on Pseudonocardia, their 16S rDNA mycins (4–7)byStreptomyces Ao10. sequences are the main ones that have been collected and used to The LC-MS screening of the extracts from all Streptomyces study the evolution of the symbiosis between Pseudonocardia
Recommended publications
  • Pseudonocardia Acaciae Sp. Nov., Isolated from Roots of Acacia Auriculiformis A
    Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth. Page 1 of 2 Pseudonocardia acaciae sp. nov., isolated from roots of Acacia auriculiformis A. Cunn. ex Benth. 123 Kannika Duangmal , Arinthip Thamchaipenet , Atsuko Matsumoto and 3 Yoko Takahashi - Author Affiliations 1Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand 2Department of Genetics, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand 3Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan Correspondence Kannika Duangmal [email protected] or [email protected] Abstract A novel Gram-positive-staining actinomycete designated strain GMKU095T was isolated from surface-sterilized roots of Acacia auriculiformis A. Cunn. ex Benth. (earpod wattle). The organism produced branching mycelium. The spores were non-motile and had a spiny surface. Growth of strain GMKU095T occurred at 18– 42 °C, pH 5.0–8.0 and at NaCl concentrations up to 5 %. Whole-cell hydrolysates contained arabinose and galactose as major characteristic sugars. The diagnostic diamino acid of the peptidoglycan was meso-diaminopimelic acid. The glycan moiety of the murein contained acetyl residues. The menaquinone was MK-8(H4); mycolic acids were not detected. The G+C content of the DNA was 71.6 mol%. iso- C16 : 0 was detected as the major cellular fatty acid. Comparative studies of 16S rRNA gene sequences indicated that the strain was phylogenetically related to members of the genus Pseudonocardia. The most closely related type strain is Pseudonocardia spinosispora IMSNU 50581T , which is 96.2 % similar in 16S rRNA gene sequence.
    [Show full text]
  • Pseudonocardia Pini Sp. Nov., an Endophytic Actinobacterium Isolated from Roots of the Pine Tree Callitris Preissii
    Pseudonocardia Pini Sp. Nov., An Endophytic Actinobacterium Isolated From Roots of the Pine Tree Callitris Preissii Onuma Kaewkla ( [email protected] ) Mahasarakham University https://orcid.org/0000-0001-7630-7074 Christopher Milton Mathew Franco Flinders University of South Australia: Flinders University Research Article Keywords: Pseudonocardia pini sp. nov., an endophytic actinobacterium Posted Date: March 16th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-274242/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Archives of Microbiology on April 23rd, 2021. See the published version at https://doi.org/10.1007/s00203-021-02309-3. Page 1/16 Abstract A Gram positive, aerobic, actinobacterial strain with rod-shaped spores, CAP47RT, which was isolated from the surface-sterilized root of a native pine tree (Callitris preissii), South Australia is described. The major cellular fatty acid of this strain was iso-H-C16:1 and major menaquinone was MK-8(H4). The diagnostic diamino acid in the cell-wall peptidoglycan was identied as meso- diaminopimelic acid. These chemotaxonomic data conrmed the aliation of strain CAP47RT to the genus Pseudonocardia. Phylogenetic evaluation based on 16S rRNA gene sequence analysis placed this strain in the family Pseudonocardiaceae, being most closely related to Pseudonocardia xishanensis JCM 17906T (98.8%), Pseudonocardia oroxyli DSM 44984T (98.7%), Pseudonocardia thailandensis CMU-NKS-70T (98.7%), and Pseudonocardia ailaonensis DSM 44979T (97.9%). The results of the polyphasic study which contain genome comparisons of ANIb, ANIm and digital DNA-DNA hybridization revealed the differentiation of strain CAP47RT from the closest species with validated names.
    [Show full text]
  • Generalized Antifungal Activity and 454-Screening of Pseudonocardia and Amycolatopsis Bacteria in Nests of Fungus-Growing Ants
    Generalized antifungal activity and 454-screening SEE COMMENTARY of Pseudonocardia and Amycolatopsis bacteria in nests of fungus-growing ants Ruchira Sena,1, Heather D. Ishaka, Dora Estradaa, Scot E. Dowdb, Eunki Honga, and Ulrich G. Muellera,1 aSection of Integrative Biology, University of Texas, Austin, TX 78712; and bMedical Biofilm Research Institute, 4321 Marsha Sharp Freeway, Lubbock, TX 79407 Edited by Raghavendra Gadagkar, Indian Institute of Science, Bangalore, India, and approved August 14, 2009 (received for review May 1, 2009) In many host-microbe mutualisms, hosts use beneficial metabolites origin (12–14). Many of the ant-associated Pseudonocardia species supplied by microbial symbionts. Fungus-growing (attine) ants are show antibiotic activity in vitro against Escovopsis (13–15). A thought to form such a mutualism with Pseudonocardia bacteria to diversity of actinomycete bacteria including Pseudonocardia also derive antibiotics that specifically suppress the coevolving pathogen occur in the ant gardens, in the soil surrounding attine nests, and Escovopsis, which infects the ants’ fungal gardens and reduces possibly in the substrate used by the ants for fungiculture (16, 17). growth. Here we test 4 key assumptions of this Pseudonocardia- The prevailing view of attine actinomycete-Escovopsis antago- Escovopsis coevolution model. Culture-dependent and culture- nism is a coevolutionary arms race between antibiotic-producing independent (tag-encoded 454-pyrosequencing) surveys reveal that Pseudonocardia and Escovopsis parasites (5, 18–22). Attine ants are several Pseudonocardia species and occasionally Amycolatopsis (a thought to use their integumental actinomycetes to specifically close relative of Pseudonocardia) co-occur on workers from a single combat Escovopsis parasites, which fail to evolve effective resistance nest, contradicting the assumption of a single pseudonocardiaceous against Pseudonocardia because of some unknown disadvantage strain per nest.
    [Show full text]
  • Pseudonocardia Parietis Sp. Nov., from the Indoor Environment
    This is an author manuscript that has been accepted for publication in International Journal of Systematic and Evolutionary Microbiology, copyright Society for General Microbiology, but has not been copy-edited, formatted or proofed. Cite this article as appearing in International Journal of Systematic and Evolutionary Microbiology. This version of the manuscript may not be duplicated or reproduced, other than for personal use or within the rule of ‘Fair Use of Copyrighted Materials’ (section 17, Title 17, US Code), without permission from the copyright owner, Society for General Microbiology. The Society for General Microbiology disclaims any responsibility or liability for errors or omissions in this version of the manuscript or in any version derived from it by any other parties. The final copy-edited, published article, which is the version of record, can be found at http://ijs.sgmjournals.org, and is freely available without a subscription 24 months after publication. First published in: Int J Syst Evol Microbiol, 2009. 59(10) 2449-52. doi:10.1099/ijs.0.009993-0 Pseudonocardia parietis sp. nov., from the indoor environment J. Scha¨fer,1 H.-J. Busse2 and P. Ka¨mpfer1 Correspondence 1Institut fu¨r Angewandte Mikrobiologie, Justus-Liebig-Universita¨t Giessen, D-35392 Giessen, P. Ka¨mpfer Germany [email protected] 2Institut fu¨r Bakteriologie, Mykologie und Hygiene, Veterina¨rmedizinische Universita¨t, A-1210 Wien, giessen.de Austria A Gram-positive, rod-shaped, non-endospore-forming, mycelium-forming actinobacterium (04- St-002T) was isolated from the wall of an indoor environment colonized with moulds. On the basis of 16S rRNA gene sequence similarity studies, strain 04-St-002T was shown to belong to the family Pseudonocardiaceae, and to be most closely related to Pseudonocardia antarctica (99.2 %) and Pseudonocardia alni (99.1 %).
    [Show full text]
  • Induction of Secondary Metabolism Across Actinobacterial Genera
    Induction of secondary metabolism across actinobacterial genera A thesis submitted for the award Doctor of Philosophy at Flinders University of South Australia Rio Risandiansyah Department of Medical Biotechnology Faculty of Medicine, Nursing and Health Sciences Flinders University 2016 TABLE OF CONTENTS TABLE OF CONTENTS ............................................................................................ ii TABLE OF FIGURES ............................................................................................. viii LIST OF TABLES .................................................................................................... xii SUMMARY ......................................................................................................... xiii DECLARATION ...................................................................................................... xv ACKNOWLEDGEMENTS ...................................................................................... xvi Chapter 1. Literature review ................................................................................. 1 1.1 Actinobacteria as a source of novel bioactive compounds ......................... 1 1.1.1 Natural product discovery from actinobacteria .................................... 1 1.1.2 The need for new antibiotics ............................................................... 3 1.1.3 Secondary metabolite biosynthetic pathways in actinobacteria ........... 4 1.1.4 Streptomyces genetic potential: cryptic/silent genes ..........................
    [Show full text]
  • Marine Rare Actinomycetes: a Promising Source of Structurally Diverse and Unique Novel Natural Products
    Review Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products Ramesh Subramani 1 and Detmer Sipkema 2,* 1 School of Biological and Chemical Sciences, Faculty of Science, Technology & Environment, The University of the South Pacific, Laucala Campus, Private Mail Bag, Suva, Republic of Fiji; [email protected] 2 Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands * Correspondence: [email protected]; Tel.: +31-317-483113 Received: 7 March 2019; Accepted: 23 April 2019; Published: 26 April 2019 Abstract: Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products.
    [Show full text]
  • Inter-Domain Horizontal Gene Transfer of Nickel-Binding Superoxide Dismutase 2 Kevin M
    bioRxiv preprint doi: https://doi.org/10.1101/2021.01.12.426412; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Inter-domain Horizontal Gene Transfer of Nickel-binding Superoxide Dismutase 2 Kevin M. Sutherland1,*, Lewis M. Ward1, Chloé-Rose Colombero1, David T. Johnston1 3 4 1Department of Earth and Planetary Science, Harvard University, Cambridge, MA 02138 5 *Correspondence to KMS: [email protected] 6 7 Abstract 8 The ability of aerobic microorganisms to regulate internal and external concentrations of the 9 reactive oxygen species (ROS) superoxide directly influences the health and viability of cells. 10 Superoxide dismutases (SODs) are the primary regulatory enzymes that are used by 11 microorganisms to degrade superoxide. SOD is not one, but three separate, non-homologous 12 enzymes that perform the same function. Thus, the evolutionary history of genes encoding for 13 different SOD enzymes is one of convergent evolution, which reflects environmental selection 14 brought about by an oxygenated atmosphere, changes in metal availability, and opportunistic 15 horizontal gene transfer (HGT). In this study we examine the phylogenetic history of the protein 16 sequence encoding for the nickel-binding metalloform of the SOD enzyme (SodN). A comparison 17 of organismal and SodN protein phylogenetic trees reveals several instances of HGT, including 18 multiple inter-domain transfers of the sodN gene from the bacterial domain to the archaeal domain.
    [Show full text]
  • Pseudonocardia Asaccharolytica Sp. Nov. and Pseudonocardia Sulfidoxydans Sp
    International Journal of Systematic Bacteriology (1998), 48, 441-449 Printed in Great Britain Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulf ide-degrading actinomycetes and emended description of the genus Pseudonocardia Katrin Reichert,’ Andre Lipski,’ Silke Pradella,2 Erko Stackebrandt2 and Karlheinz Altendorf’ Author for correspondence: Andre Lipski. Fax: +49 541 969 2870. e-mail : Lipski@sfbbiol .biologie.uni-osnabrueck.de 1 Abteilung Mikrobiologie, Seven bacterial strains capable of oxidizing methyl sulfides were isolated from Universitat Osnabruck, experimental biofilters filled with tree-bark compost. The isolates could be Fachbereich BiologieKhemie, D-49069 divided into two groups according to their method of methyl sulfide Osnabruck, Germany degradation. Four isolates could use only dimethyl disulfide as the sole source * Deutsche Sammlung von of energy and three strains were able to use dimethyl sulfide and dimethyl Mikroorganismen und disulfide. Oxidation of the methyl sulfides by both groups led to the Zellkulturen GmbH, stoichiometric formation of sulfate. Chemotaxonomic, morphological, Mascheroder Weg 1b, D-38124 Braunschweig, physiological and phylogenetic properties identified all isolates as members of Germany the genus Pseudonocardia. The absence of phosphatidylcholine from the polar lipid pattern, as well as results of 16s rDNA analyses, led to the proposal of two new species, Pseudonocadia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov.
    [Show full text]
  • Poly(Lactide)
    128 Chiang Mai J. Sci. 2012; 39(1) Chiang Mai J. Sci. 2012; 39(1) : 128-132 http://it.science.cmu.ac.th/ejournal/ Short Communication Poly(lactide) Degradation By Pseudonocardia alni AS4.1531T Maytiya Konkit [a], Amnat Jarerat [b], Chartchai Khanongnuch [c,d], Saisamorn Lumyong [a,d] and Wasu Pathom-aree*[a,d] [a] Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand. [b] School of Interdisciplinary Studies, Mahidol University at Kanchanaburi, Saiyok, Kanchanaburi, 71150, Thailand. [c] Division of Biotechnology, Faculty of Agro-Industry, Chiang Mai University, Chiang Mai 50200, Thailand. [d] Materials Science Research Center, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand. *Author for correspondence; e-mail: [email protected] Received: 8 November 2011 Accepted: 4 January 2012 ABSTRACT Twenty actinobacterial strains belong to the genus Pseudonocardia were screened for their ability to degrade poly(lactide) plastic. Pseudonocardia alni AS4.1531T was the only strain that decreased PLA film weight by more than 70% in eight days. This strain could degrade 35.8 mg out of 50 mg PLA films in liquid culture containing 0.1% (w/v) gelatin. In addition, Pseudonocardia alni AS4.1531T assimilated the major degradation product, lactic acid. Keywords: Poly(lactide), Degradation, Pseudonocardia alni AS4.1531T. 1. INTRODUCTION Plastic wastes are currently a serious starch, corn, cassava, through fermentation environmental problem of concern. process [3]. PLA is being used in packaging Bioplastics
    [Show full text]
  • A Genome Compendium Reveals Diverse Metabolic Adaptations of Antarctic Soil Microorganisms
    bioRxiv preprint doi: https://doi.org/10.1101/2020.08.06.239558; this version posted August 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. August 3, 2020 A genome compendium reveals diverse metabolic adaptations of Antarctic soil microorganisms Maximiliano Ortiz1 #, Pok Man Leung2 # *, Guy Shelley3, Marc W. Van Goethem1,4, Sean K. Bay2, Karen Jordaan1,5, Surendra Vikram1, Ian D. Hogg1,7,8, Thulani P. Makhalanyane1, Steven L. Chown6, Rhys Grinter2, Don A. Cowan1 *, Chris Greening2,3 * 1 Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Hatfield, Pretoria 0002, South Africa 2 Department of Microbiology, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia 3 School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia 4 Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA 5 Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Alameda 340, Santiago 6 Securing Antarctica’s Environmental Future, School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia 7 School of Science, University of Waikato, Hamilton 3240, New Zealand 8 Polar Knowledge Canada, Canadian High Arctic Research Station, Cambridge Bay, NU X0B 0C0, Canada # These authors contributed equally to this work. * Correspondence may be addressed to: A/Prof Chris Greening ([email protected]) Prof Don A. Cowan ([email protected]) Pok Man Leung ([email protected]) bioRxiv preprint doi: https://doi.org/10.1101/2020.08.06.239558; this version posted August 6, 2020.
    [Show full text]
  • Review Article Specialized Fungal Parasites and Opportunistic Fungi in Gardens of Attine Ants
    Hindawi Publishing Corporation Psyche Volume 2012, Article ID 905109, 9 pages doi:10.1155/2012/905109 Review Article Specialized Fungal Parasites and Opportunistic Fungi in Gardens of Attine Ants Fernando C. Pagnocca,1 Virginia E. Masiulionis,1 and Andre Rodrigues1, 2 1 Centre for the Study of Social Insects, Sao˜ Paulo State University (UNESP), 13506-900 Rio Claro, SP, Brazil 2 Department of Biochemistry and Microbiology, Sao˜ Paulo State University (UNESP), 13506-900 Rio Claro, SP, Brazil Correspondence should be addressed to Andre Rodrigues, [email protected] Received 1 September 2011; Revised 2 November 2011; Accepted 5 November 2011 Academic Editor: Volker Witte Copyright © 2012 Fernando C. Pagnocca et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Ants in the tribe Attini (Hymenoptera: Formicidae) comprise about 230 described species that share the same characteristic: all coevolved in an ancient mutualism with basidiomycetous fungi cultivated for food. In this paper we focused on fungi other than the mutualistic cultivar and their roles in the attine ant symbiosis. Specialized fungal parasites in the genus Escovopsis negatively impact the fungus gardens. Many fungal parasites may have small impacts on the ants’ fungal colony when the colony is balanced, but then may opportunistically shift to having large impacts if the ants’ colony becomes unbalanced. 1. Introduction family Pterulaceae (the “coral fungi” [10, 11]), (iii) a group of ants that cultivate Leucocoprini fungi in the yeast form (ants Restricted to the New World, the approximately 230 fungus- in the Cyphomyrmex rimosus group), (iv) the higher attine growing ant species in the tribe Attini cultivate basidiomyce- agriculture that encompass the derived genera Trachymyrmex tous fungi on freshly harvested plant substrate [1–3].
    [Show full text]
  • Systematic Research on Actinomycetes Selected According
    Systematic Research on Actinomycetes Selected according to Biological Activities Dissertation Submitted in fulfillment of the requirements for the award of the Doctor (Ph.D.) degree of the Math.-Nat. Fakultät of the Christian-Albrechts-Universität in Kiel By MSci. - Biol. Yi Jiang Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, D-24105 Kiel, Germany Supervised by Prof. Dr. Johannes F. Imhoff Kiel 2009 Referent: Prof. Dr. Johannes F. Imhoff Korreferent: ______________________ Tag der mündlichen Prüfung: Kiel, ____________ Zum Druck genehmigt: Kiel, _____________ Summary Content Chapter 1 Introduction 1 Chapter 2 Habitats, Isolation and Identification 24 Chapter 3 Streptomyces hainanensis sp. nov., a new member of the genus Streptomyces 38 Chapter 4 Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae 52 Chapter 5 A new member of the family Micromonosporaceae, Planosporangium flavogriseum gen nov., sp. nov. 67 Chapter 6 Promicromonospora flava sp. nov., isolated from sediment of the Baltic Sea 87 Chapter 7 Discussion 99 Appendix a Resume, Publication list and Patent 115 Appendix b Medium list 122 Appendix c Abbreviations 126 Appendix d Poster (2007 VAAM, Germany) 127 Appendix e List of research strains 128 Acknowledgements 134 Erklärung 136 Summary Actinomycetes (Actinobacteria) are the group of bacteria producing most of the bioactive metabolites. Approx. 100 out of 150 antibiotics used in human therapy and agriculture are produced by actinomycetes. Finding novel leader compounds from actinomycetes is still one of the promising approaches to develop new pharmaceuticals. The aim of this study was to find new species and genera of actinomycetes as the basis for the discovery of new leader compounds for pharmaceuticals.
    [Show full text]