Topic Mash II: Assortativity, Resilience, Link Prediction
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Networkx: Network Analysis with Python
NetworkX: Network Analysis with Python Salvatore Scellato Full tutorial presented at the XXX SunBelt Conference “NetworkX introduction: Hacking social networks using the Python programming language” by Aric Hagberg & Drew Conway Outline 1. Introduction to NetworkX 2. Getting started with Python and NetworkX 3. Basic network analysis 4. Writing your own code 5. You are ready for your project! 1. Introduction to NetworkX. Introduction to NetworkX - network analysis Vast amounts of network data are being generated and collected • Sociology: web pages, mobile phones, social networks • Technology: Internet routers, vehicular flows, power grids How can we analyze this networks? Introduction to NetworkX - Python awesomeness Introduction to NetworkX “Python package for the creation, manipulation and study of the structure, dynamics and functions of complex networks.” • Data structures for representing many types of networks, or graphs • Nodes can be any (hashable) Python object, edges can contain arbitrary data • Flexibility ideal for representing networks found in many different fields • Easy to install on multiple platforms • Online up-to-date documentation • First public release in April 2005 Introduction to NetworkX - design requirements • Tool to study the structure and dynamics of social, biological, and infrastructure networks • Ease-of-use and rapid development in a collaborative, multidisciplinary environment • Easy to learn, easy to teach • Open-source tool base that can easily grow in a multidisciplinary environment with non-expert users -
Geodesic Distance Descriptors
Geodesic Distance Descriptors Gil Shamai and Ron Kimmel Technion - Israel Institute of Technologies [email protected] [email protected] Abstract efficiency of state of the art shape matching procedures. The Gromov-Hausdorff (GH) distance is traditionally used for measuring distances between metric spaces. It 1. Introduction was adapted for non-rigid shape comparison and match- One line of thought in shape analysis considers an ob- ing of isometric surfaces, and is defined as the minimal ject as a metric space, and object matching, classification, distortion of embedding one surface into the other, while and comparison as the operation of measuring the discrep- the optimal correspondence can be described as the map ancies and similarities between such metric spaces, see, for that minimizes this distortion. Solving such a minimiza- example, [13, 33, 27, 23, 8, 3, 24]. tion is a hard combinatorial problem that requires pre- Although theoretically appealing, the computation of computation and storing of all pairwise geodesic distances distances between metric spaces poses complexity chal- for the matched surfaces. A popular way for compact repre- lenges as far as direct computation and memory require- sentation of functions on surfaces is by projecting them into ments are involved. As a remedy, alternative representa- the leading eigenfunctions of the Laplace-Beltrami Opera- tion spaces were proposed [26, 22, 15, 10, 31, 30, 19, 20]. tor (LBO). When truncated, the basis of the LBO is known The question of which representation to use in order to best to be the optimal for representing functions with bounded represent the metric space that define each form we deal gradient in a min-max sense. -
Network Science
This is a preprint of Katy Börner, Soma Sanyal and Alessandro Vespignani (2007) Network Science. In Blaise Cronin (Ed) Annual Review of Information Science & Technology, Volume 41. Medford, NJ: Information Today, Inc./American Society for Information Science and Technology, chapter 12, pp. 537-607. Network Science Katy Börner School of Library and Information Science, Indiana University, Bloomington, IN 47405, USA [email protected] Soma Sanyal School of Library and Information Science, Indiana University, Bloomington, IN 47405, USA [email protected] Alessandro Vespignani School of Informatics, Indiana University, Bloomington, IN 47406, USA [email protected] 1. Introduction.............................................................................................................................................2 2. Notions and Notations.............................................................................................................................4 2.1 Graphs and Subgraphs .........................................................................................................................5 2.2 Graph Connectivity..............................................................................................................................7 3. Network Sampling ..................................................................................................................................9 4. Network Measurements........................................................................................................................11 -
Networkx Reference Release 1.9.1
NetworkX Reference Release 1.9.1 Aric Hagberg, Dan Schult, Pieter Swart September 20, 2014 CONTENTS 1 Overview 1 1.1 Who uses NetworkX?..........................................1 1.2 Goals...................................................1 1.3 The Python programming language...................................1 1.4 Free software...............................................2 1.5 History..................................................2 2 Introduction 3 2.1 NetworkX Basics.............................................3 2.2 Nodes and Edges.............................................4 3 Graph types 9 3.1 Which graph class should I use?.....................................9 3.2 Basic graph types.............................................9 4 Algorithms 127 4.1 Approximation.............................................. 127 4.2 Assortativity............................................... 132 4.3 Bipartite................................................. 141 4.4 Blockmodeling.............................................. 161 4.5 Boundary................................................. 162 4.6 Centrality................................................. 163 4.7 Chordal.................................................. 184 4.8 Clique.................................................. 187 4.9 Clustering................................................ 190 4.10 Communities............................................... 193 4.11 Components............................................... 194 4.12 Connectivity.............................................. -
Latent Distance Estimation for Random Geometric Graphs ∗
Latent Distance Estimation for Random Geometric Graphs ∗ Ernesto Araya Valdivia Laboratoire de Math´ematiquesd'Orsay (LMO) Universit´eParis-Sud 91405 Orsay Cedex France Yohann De Castro Ecole des Ponts ParisTech-CERMICS 6 et 8 avenue Blaise Pascal, Cit´eDescartes Champs sur Marne, 77455 Marne la Vall´ee,Cedex 2 France Abstract: Random geometric graphs are a popular choice for a latent points generative model for networks. Their definition is based on a sample of n points X1;X2; ··· ;Xn on d−1 the Euclidean sphere S which represents the latent positions of nodes of the network. The connection probabilities between the nodes are determined by an unknown function (referred to as the \link" function) evaluated at the distance between the latent points. We introduce a spectral estimator of the pairwise distance between latent points and we prove that its rate of convergence is the same as the nonparametric estimation of a d−1 function on S , up to a logarithmic factor. In addition, we provide an efficient spectral algorithm to compute this estimator without any knowledge on the nonparametric link function. As a byproduct, our method can also consistently estimate the dimension d of the latent space. MSC 2010 subject classifications: Primary 68Q32; secondary 60F99, 68T01. Keywords and phrases: Graphon model, Random Geometric Graph, Latent distances estimation, Latent position graph, Spectral methods. 1. Introduction Random geometric graph (RGG) models have received attention lately as alternative to some simpler yet unrealistic models as the ubiquitous Erd¨os-R´enyi model [11]. They are generative latent point models for graphs, where it is assumed that each node has associated a latent d point in a metric space (usually the Euclidean unit sphere or the unit cube in R ) and the connection probability between two nodes depends on the position of their associated latent points. -
Strongly Connected Components and Biconnected Components
Strongly Connected Components and Biconnected Components Daniel Wisdom 27 January 2017 1 2 3 4 5 6 7 8 Figure 1: A directed graph. Credit: Crash Course Coding Companion. 1 Strongly Connected Components A strongly connected component (SCC) is a set of vertices where every vertex can reach every other vertex. In an undirected graph the SCCs are just the groups of connected vertices. We can find them using a simple DFS. This works because, in an undirected graph, u can reach v if and only if v can reach u. This is not true in a directed graph, which makes finding the SCCs harder. More on that later. 2 Kernel graph We can travel between any two nodes in the same strongly connected component. So what if we replaced each strongly connected component with a single node? This would give us what we call the kernel graph, which describes the edges between strongly connected components. Note that the kernel graph is a directed acyclic graph because any cycles would constitute an SCC, so the cycle would be compressed into a kernel. 3 1,2,5,6 4,7 8 Figure 2: Kernel graph of the above directed graph. 3 Tarjan's SCC Algorithm In a DFS traversal of the graph every SCC will be a subtree of the DFS tree. This subtree is not necessarily proper, meaning that it may be missing some branches which are their own SCCs. This means that if we can identify every node that is the root of its SCC in the DFS, we can enumerate all the SCCs. -
Average D-Distance Between Vertices of a Graph
italian journal of pure and applied mathematics { n. 33¡2014 (293¡298) 293 AVERAGE D-DISTANCE BETWEEN VERTICES OF A GRAPH D. Reddy Babu Department of Mathematics Koneru Lakshmaiah Education Foundation (K.L. University) Vaddeswaram Guntur 522 502 India e-mail: [email protected], [email protected] P.L.N. Varma Department of Science & Humanities V.F.S.T.R. University Vadlamudi Guntur 522 237 India e-mail: varma [email protected] Abstract. The D-distance between vertices of a graph G is obtained by considering the path lengths and as well as the degrees of vertices present on the path. The average D-distance between the vertices of a connected graph is the average of the D-distances between all pairs of vertices of the graph. In this article we study the average D-distance between the vertices of a graph. Keywords: D-distance, average D-distance, diameter. 2000 Mathematics Subject Classi¯cation: 05C12. 1. Introduction The concept of distance is one of the important concepts in study of graphs. It is used in isomorphism testing, graph operations, hamiltonicity problems, extremal problems on connectivity and diameter, convexity in graphs etc. Distance is the basis of many concepts of symmetry in graphs. In addition to the usual distance, d(u; v) between two vertices u; v 2 V (G) we have detour distance (introduced by Chartrand et al, see [2]), superior distance (introduced by Kathiresan and Marimuthu, see [6]), signal distance (introduced by Kathiresan and Sumathi, see [7]), degree distance etc. 294 d. reddy babu, p.l.n. varma In an earlier article [9], the authors introduced the concept of D-distance be- tween vertices of a graph G by considering not only path length between vertices, but also the degrees of all vertices present in a path while de¯ning the D-distance. -
Analyzing Social Media Network for Students in Presidential Election 2019 with Nodexl
ANALYZING SOCIAL MEDIA NETWORK FOR STUDENTS IN PRESIDENTIAL ELECTION 2019 WITH NODEXL Irwan Dwi Arianto Doctoral Candidate of Communication Sciences, Airlangga University Corresponding Authors: [email protected] Abstract. Twitter is widely used in digital political campaigns. Twitter as a social media that is useful for building networks and even connecting political participants with the community. Indonesia will get a demographic bonus starting next year until 2030. The number of productive ages that will become a demographic bonus if not recognized correctly can be a problem. The election organizer must seize this opportunity for the benefit of voter participation. This study aims to describe the network structure of students in the 2019 presidential election. The first debate was held on January 17, 2019 as a starting point for data retrieval on Twitter social media. This study uses data sources derived from Twitter talks from 17 January 2019 to 20 August 2019 with keywords “#pilpres2019 OR #mahasiswa since: 2019-01-17”. The data obtained were analyzed by the communication network analysis method using NodeXL software. Our Analysis found that Top Influencer is @jokowi, as well as Top, Mentioned also @jokowi while Top Tweeters @okezonenews and Top Replied-To @hasmi_bakhtiar. Jokowi is incumbent running for re-election with Ma’ruf Amin (Senior Muslim Cleric) as his running mate against Prabowo Subianto (a former general) and Sandiaga Uno as his running mate (former vice governor). This shows that the more concentrated in the millennial generation in this case students are presidential candidates @jokowi. @okezonenews, the official twitter account of okezone.com (MNC Media Group). -
Assortativity and Mixing
Assortativity and Assortativity and Mixing General mixing between node categories Mixing Assortativity and Mixing Definition Definition I Assume types of nodes are countable, and are Complex Networks General mixing General mixing Assortativity by assigned numbers 1, 2, 3, . Assortativity by CSYS/MATH 303, Spring, 2011 degree degree I Consider networks with directed edges. Contagion Contagion References an edge connects a node of type µ References e = Pr Prof. Peter Dodds µν to a node of type ν Department of Mathematics & Statistics Center for Complex Systems aµ = Pr(an edge comes from a node of type µ) Vermont Advanced Computing Center University of Vermont bν = Pr(an edge leads to a node of type ν) ~ I Write E = [eµν], ~a = [aµ], and b = [bν]. I Requirements: X X X eµν = 1, eµν = aµ, and eµν = bν. µ ν ν µ Licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License. 1 of 26 4 of 26 Assortativity and Assortativity and Outline Mixing Notes: Mixing Definition Definition General mixing General mixing Assortativity by I Varying eµν allows us to move between the following: Assortativity by degree degree Definition Contagion 1. Perfectly assortative networks where nodes only Contagion References connect to like nodes, and the network breaks into References subnetworks. General mixing P Requires eµν = 0 if µ 6= ν and µ eµµ = 1. 2. Uncorrelated networks (as we have studied so far) Assortativity by degree For these we must have independence: eµν = aµbν . 3. Disassortative networks where nodes connect to nodes distinct from themselves. Contagion I Disassortative networks can be hard to build and may require constraints on the eµν. -
"Distance Measures for Graph Theory"
Distance measures for graph theory : Comparisons and analyzes of different methods Dissertation presented by Maxime DUYCK for obtaining the Master’s degree in Mathematical Engineering Supervisor(s) Marco SAERENS Reader(s) Guillaume GUEX, Bertrand LEBICHOT Academic year 2016-2017 Acknowledgments First, I would like to thank my supervisor Pr. Marco Saerens for his presence, his advice and his precious help throughout the realization of this thesis. Second, I would also like to thank Bertrand Lebichot and Guillaume Guex for agreeing to read this work. Next, I would like to thank my parents, all my family and my friends to have accompanied and encouraged me during all my studies. Finally, I would thank Malian De Ron for creating this template [65] and making it available to me. This helped me a lot during “le jour et la nuit”. Contents 1. Introduction 1 1.1. Context presentation .................................. 1 1.2. Contents .......................................... 2 2. Theoretical part 3 2.1. Preliminaries ....................................... 4 2.1.1. Networks and graphs .............................. 4 2.1.2. Useful matrices and tools ........................... 4 2.2. Distances and kernels on a graph ........................... 7 2.2.1. Notion of (dis)similarity measures ...................... 7 2.2.2. Kernel on a graph ................................ 8 2.2.3. The shortest-path distance .......................... 9 2.3. Kernels from distances ................................. 9 2.3.1. Multidimensional scaling ............................ 9 2.3.2. Gaussian mapping ............................... 9 2.4. Similarity measures between nodes .......................... 9 2.4.1. Katz index and its Leicht’s extension .................... 10 2.4.2. Commute-time distance and Euclidean commute-time distance .... 10 2.4.3. SimRank similarity measure ......................... -
Percolation Theory Are Well-Suited To
Models of Disordered Media and Predictions of Associated Hydraulic Conductivity A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science By L AARON BLANK B.S., Wright State University, 2004 2006 Wright State University WRIGHT STATE UNIVERSITY SCHOOL OF GRADUATE STUDIES Novermber 6, 2006 I HEREBY RECOMMEND THAT THE THESIS PREPARED UNDER MY SUPERVISION BY L Blank ENTITLED Models of Disordered Media and Predictions of Associated Hydraulic Conductivity BE ACCEPTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Master of Science. _______________________ Allen Hunt, Ph.D. Thesis Advisor _______________________ Lok Lew Yan Voon, Ph.D. Department Chair _______________________ Joseph F. Thomas, Jr., Ph.D. Dean of the School of Graduate Studies Committee on Final Examination ____________________ Allen Hunt, Ph.D. ____________________ Brent D. Foy, Ph.D. ____________________ Gust Bambakidis, Ph.D. ____________________ Thomas Skinner, Ph.D. Abstract In the late 20th century there was a spill of Technetium in eastern Washington State at the US Department of Energy Hanford site. Resulting contamination of water supplies would raise serious health issues for local residents. Therefore, the ability to predict how these contaminants move through the soil is of great interest. The main contribution to contaminant transport arises from being carried along by flowing water. An important control on the movement of the water through the medium is the hydraulic conductivity, K, which defines the ease of water flow for a given pressure difference (analogous to the electrical conductivity). The overall goal of research in this area is to develop a technique which accurately predicts the hydraulic conductivity as well as its distribution, both in the horizontal and the vertical directions, for media representative of the Hanford subsurface. -
Graph and Network Analysis
Graph and Network Analysis Dr. Derek Greene Clique Research Cluster, University College Dublin Web Science Doctoral Summer School 2011 Tutorial Overview • Practical Network Analysis • Basic concepts • Network types and structural properties • Identifying central nodes in a network • Communities in Networks • Clustering and graph partitioning • Finding communities in static networks • Finding communities in dynamic networks • Applications of Network Analysis Web Science Summer School 2011 2 Tutorial Resources • NetworkX: Python software for network analysis (v1.5) http://networkx.lanl.gov • Python 2.6.x / 2.7.x http://www.python.org • Gephi: Java interactive visualisation platform and toolkit. http://gephi.org • Slides, full resource list, sample networks, sample code snippets online here: http://mlg.ucd.ie/summer Web Science Summer School 2011 3 Introduction • Social network analysis - an old field, rediscovered... [Moreno,1934] Web Science Summer School 2011 4 Introduction • We now have the computational resources to perform network analysis on large-scale data... http://www.facebook.com/note.php?note_id=469716398919 Web Science Summer School 2011 5 Basic Concepts • Graph: a way of representing the relationships among a collection of objects. • Consists of a set of objects, called nodes, with certain pairs of these objects connected by links called edges. A B A B C D C D Undirected Graph Directed Graph • Two nodes are neighbours if they are connected by an edge. • Degree of a node is the number of edges ending at that node. • For a directed graph, the in-degree and out-degree of a node refer to numbers of edges incoming to or outgoing from the node.