Lab 2: Implementing a Shell COMPSCI 310: Introduction to Operating Systems
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Chapter 10 Streams Streams Text Files and Binary Files
Streams Chapter 10 • A stream is an object that enables the flow of File I/O data between a ppgrogram and some I/O device or file – If the data flows into a program, then the stream is called an input stream – If the dtdata flows out of a program, then the stream is called an output stream Copyright © 2012 Pearson Addison‐Wesley. All rights reserved. 10‐2 Streams Text Files and Binary Files • Input streams can flow from the kbkeyboar d or from a • Files that are designed to be read by human beings, file and that can be read or written with an editor are – StSystem. in is an itinput stream tha t connects to the called text files keyboard – Scanner keyy(y);board = new Scanner(System.in); Text files can also be called ASCII files because the data they contain uses an ASCII encoding scheme • Output streams can flow to a screen or to a file – An advantage of text files is that the are usually the same – System.out is an output stream that connects to the screen on all computers, so tha t they can move from one System.out.println("Output stream"); computer to another Copyright © 2012 Pearson Addison‐Wesley. All rights reserved. 10‐3 Copyright © 2012 Pearson Addison‐Wesley. All rights reserved. 10‐4 Text Files and Binary Files Writing to a Text File • Files tha t are didesigne d to be read by programs and • The class PrintWriter is a stream class that consist of a sequence of binary digits are called binary files that can be used to write to a text file – Binary files are designed to be read on the same type of – An object of the class PrintWriter has the computer and with the same programming language as the computer that created the file methods print and println – An advantage of binary files is that they are more efficient – These are similar to the System.out methods to process than text files of the same names, but are used for text file – Unlike most binary files, Java binary files have the advantage of being platform independent also output, not screen output Copyright © 2012 Pearson Addison‐Wesley. -
C++ Input/Output: Streams 4
C++ Input/Output: Streams 4. Input/Output 1 The basic data type for I/O in C++ is the stream. C++ incorporates a complex hierarchy of stream types. The most basic stream types are the standard input/output streams: istream cin built-in input stream variable; by default hooked to keyboard ostream cout built-in output stream variable; by default hooked to console header file: <iostream> C++ also supports all the input/output mechanisms that the C language included. However, C++ streams provide all the input/output capabilities of C, with substantial improvements. We will exclusively use streams for input and output of data. Computer Science Dept Va Tech August, 2001 Intro Programming in C++ ©1995-2001 Barnette ND & McQuain WD C++ Streams are Objects 4. Input/Output 2 The input and output streams, cin and cout are actually C++ objects. Briefly: class: a C++ construct that allows a collection of variables, constants, and functions to be grouped together logically under a single name object: a variable of a type that is a class (also often called an instance of the class) For example, istream is actually a type name for a class. cin is the name of a variable of type istream. So, we would say that cin is an instance or an object of the class istream. An instance of a class will usually have a number of associated functions (called member functions) that you can use to perform operations on that object or to obtain information about it. The following slides will present a few of the basic stream member functions, and show how to go about using member functions. -
HP C Run-Time Library Reference Manual for Openvms Systems
HP C Run-Time Library Reference Manual for OpenVMS Systems Order Number: BA554-90014 June 2010 This manual describes the functions and macros in the HP C Run-Time Library for OpenVMS systems. Revision/Update Information: This manual supersedes the HP C Run-Time Library Reference Manual for OpenVMS Systems, Version 8.3 Software Version: OpenVMS Version 8.4 for Integrity servers OpenVMS Alpha Version 8.4 Hewlett-Packard Company Palo Alto, California © Copyright 2010 Hewlett-Packard Development Company, L.P. Confidential computer software. Valid license from HP required for possession, use or copying. Consistent with FAR 12.211 and 12.212, Commercial Computer Software, Computer Software Documentation, and Technical Data for Commercial Items are licensed to the U.S. Government under vendor’s standard commercial license. The information contained herein is subject to change without notice. The only warranties for HP products and services are set forth in the express warranty statements accompanying such products and services. Nothing herein should be construed as constituting an additional warranty. HP shall not be liable for technical or editorial errors or omissions contained herein. UNIX is a registered trademark of The Open Group. X/Open is a registered trademark of X/Open Company Ltd. in the UK and other countries. Intel and Itanium are trademarks or registered trademarks of Intel Corporation or its subsidiaries in the United States and other countries. Microsoft and Windows are US registered trademarks of Microsoft Corporation. Printed in the US ZK5763 The HP OpenVMS documentation set is available on CD-ROM. This document was prepared using DECdocument, Version 3.3-1b. -
Lab Work 06. Linux Shell. Files Globbing & Streams Redirection
LAB WORK 06. LINUX SHELL. FILES GLOBBING & STREAMS REDIRECTION. 1. PURPOSE OF WORK • Learn to use shell file globbing (wildcard); • Learn basic concepts about standard UNIX/Linux streams redirections; • Acquire skills of working with filter-programs. • Get experience in creating composite commands that have a different functional purpose than the original commands. 2. TASKS FOR WORK NOTE. Start Your UbuntuMini Virtual Machine on your VirtualBox. You need only Linux Terminal to complete the lab tasks. Before completing the tasks, make a Snapshot of your Virtual Linux. If there are problems, you can easily go back to working condition! 2.0. Create new User account for this Lab Work. • Login as student account (user with sudo permissions). • Create new user account, example stud. Use adduser command. (NOTE. You can use the command “userdel –rf stud” to delete stud account from your Linux.) $ sudo adduser stud • Logout from student account (logout) and login as stud. 2.1. Shell File Globbing Study. 2.2. File Globbing Practice. (Fill in a Table 1 and Table 2) 2.3. Command I/O Redirection Study. 2.4. Redirection Practice. (Fill in a Table 3 and Table 4) © Yuriy Shamshin, 2021 1/20 3. REPORT Make a report about this work and send it to the teacher’s email (use a docx Report Blank). REPORT FOR LAB WORK 06: LINUX SHELL. FILES GLOBBING & STREAMS REDIRECTION Student Name Surname Student ID (nV) Date 3.1. Insert Completing Table 1. File globbing understanding. 3.2. Insert Completing Table 2. File globbing creation. 3.3. Insert Completing Table 3. Command I/O redirection understanding. -
L13 Streams and IO
Binghamton CS-220 University Spring 20162015 Includes & Streams 1 Binghamton CS-220 University Spring 20162015 C Pre-Processor C Program Pre-Processor Pre-processed C Program Header Files Header Files 2 Binghamton CS-220 University Spring 20162015 #include • Two flavors: • #include <abc.h> • Replace this line with the contents of file abc.h found in the system libraries • #include “xyz.h” • Replace this line with the contents of file xyz.h found in the current directory • Concept: Write code once, use it in many different programs • By convention, included files are called “header files” and have a “.h” file type 3 Binghamton CS-220 University Spring 20162015 Header (.h) files • May include any valid C code • may include further #includes • Typically small – only what you need to invoke “outside” functions • Function prototype declarations • Sometimes, data and/or type declarations • Typically, a header file describes a group of functions • “related” functions – e.g. functions which deal with Input and Output • Typically associated with a “.c” file with the same name • .c file contains function definitions – more later 4 Binghamton CS-220 University Spring 20162015 C Standard Library • Part of C itself • Definitions/Descriptions included in C standard • Available with every C compiler • Primarily, a set of C functions we all can use • Keep C language simple • Wrap complicated stuff in function definitions • We don’t need to know about the implementation of the complicated stuff • Full description of standard library available as reference • Programming in C, Appendix B 5 Binghamton CS-220 University Spring 20162015 Standard Input and Output • Need: #include <stdio.h> • Large list of input and output functions to: • Read and write from a “stream” • Open a file and make a stream • Close a file and remove the stream • Create, Rename, delete, or move files • Streams…. -
CS2043 - Unix Tools & Scripting Cornell University, Spring 20141
CS2043 - Unix Tools & Scripting Cornell University, Spring 20141 Instructor: Bruno Abrahao January 31, 2014 1 Slides evolved from previous versions by Hussam Abu-Libdeh and David Slater Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Vim: Tip of the day! Line numbers Displays line number in Vim: :set nu Hides line number in Vim: :set nonu Goes to line number: :line number Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Counting wc How many lines of code are in my new awesome program? How many words are in this document? Good for bragging rights Word, Character, Line, and Byte count with wc wc -l : count the number of lines wc -w : count the number of words wc -m : count the number of characters wc -c : count the number of bytes Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Sorting sort Sorts the lines of a text file alphabetically. sort -ru file sorts the file in reverse order and deletes duplicate lines. sort -n -k 2 -t : file sorts the file numerically by using the second column, separated by a colon Example Consider a file (numbers.txt) with the numbers 1, 5, 8, 11, 62 each on a separate line, then: $ sort numbers.txt $ sort numbers.txt -n 1 1 11 5 5 8 62 11 8 62 Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting uniq uniq uniq file - Discards all but one of successive identical lines uniq -c file - Prints the number of successive identical lines next to each line Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Character manipulation! The Translate Command tr [options] <char_list1> [char_list2] Translate or delete characters char lists are strings of characters By default, searches for characters in char list1 and replaces them with the ones that occupy the same position in char list2 Example: tr 'AEIOU' 'aeiou' - changes all capital vowels to lower case vowels Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Pipes and redirection tr only receives input from standard input (stdin) i.e. -
Shells and Shell Programming
Shells & Shell Programming (Part A) Software Tools EECS2031 Winter 2018 Manos Papagelis Thanks to Karen Reid and Alan J Rosenthal for material in these slides SHELLS 2 What is a Shell • A shell is a command line interpreter that is the interface between the user and the OS. • The shell: – analyzes each command – determines what actions are to be performed – performs the actions • Example: wc –l file1 > file2 3 Which shell? • sh – Bourne shell – Most common, other shells are a superset – Good for programming • csh or tcsh – command-line default on EECS labs – C-like syntax – Best for interactive use. • bash – default on Linux (Bourne again shell) – Based on sh, with some csh features. • korn – written by David Korn – Based on sh – Some claim best for programming. – Commercial product. 4 bash versus sh • On EECS labs, when you run sh, you are actually running bash. • bash is a superset of sh. • For EECS2031, you will be learning only the features of the language that belong to sh. 5 Changing your shell • I recommend changing your working shell on EECS to bash – It will make it easier to test your shell programs. – You will only need to learn one set of syntax. • What to do: – echo $SHELL (to check your current shell) – chsh <userid> bash – Logout and log back in. – .profile is executed every time you log in, so put your environment variables there 6 Standard Streams • Preconnected input and output channels between a computer program and its environment. There are 3 I/O connections: – standard input (stdin) – standard output (stdout) – standard -
Unix, Standard I/O and Command Line Arguments Overview Redirection
Unix, Standard I/O and command line arguments For any programming assignments I give you, I expect a program that reads and writes to standard input and output, taking any extra parameters from the command line. This handout explains how to do that. I have also appended a small appendix of useful Unix commands. I recommend that you go to a Unix terminal and type in and run all of the examples in the gray boxes. You can do this from the Terminal application on a MacIntosh, or from a terminal window in GNU/Linux or any Unix-like operating system, from Cygwin in Windows maybe, or by connecting to bingsuns using SSH. Overview Most programming languages feature “standard,” or default, input and output channels where I/O goes unless otherwise specified. In C, the functions scanf(), gets() and getchar() read from standard input, while printf(), puts() and putchar() write to standard output. In Tcl, the gets and puts commands read and write standard input and output. In awk and perl, you just sort of use the force and your program receives a line of input from somewhere. Letʼs stick with C for the time being.1 When a program runs from a terminal, standard input is usually the userʼs keyboard input, while standard output is displayed as text on-screen. Unix and Unix-like operating systems allow you to intercept the standard I/O channels of a program to redirect them into files or other programs. This gives you the ability to chain many simple programs to do something genuinely useful. -
Alex Scriven Data Scientist Introduction to the Course This Course Will Cover
Introduction and refresher I N T R O D U C T I O N TO B A S H S C R I P T I N G Alex Scriven Data Scientist Introduction to the course This course will cover: Moving from command-line to a Bash script Variables and data types in Bash scripting Control statements Functions and script automation INTRODUCTION TO BASH SCRIPTING Why Bash scripting? (Bash) Firstly, let's consider why Bash? Bash stands for 'Bourne Again Shell' (a pun) Developed in the 80's but a very popular shell today. Default in many Unix systems, Macs Unix is the internet! (Running ML Models, Data Pipelines) AWS, Google, Microso all have CLI's to their products INTRODUCTION TO BASH SCRIPTING Why Bash scripting? (scripting!) So why Bash scripting? Ease of execution of shell commands (no need to copy-paste every time!) Powerful programming constructs INTRODUCTION TO BASH SCRIPTING Expected knowledge You are expected to have some basic knowledge for this course. Understand what the command-line (terminal, shell) is Have used basic commands such as cat , grep , sed etc. If you are rusty, don't worry - we will revise this now! INTRODUCTION TO BASH SCRIPTING Shell commands refresher Some important shell commands: (e)grep lters input based on regex paern matching cat concatenates le contents line-by-line tail \ head give only the last -n (a ag) lines wc does a word or line count (with ags -w -l ) sed does paern-matched string replacement INTRODUCTION TO BASH SCRIPTING A reminder of REGEX 'Regex' or regular expressions are a vital skill for Bash scripting. -
Deepfreeze: a Management Interface for ISEAGE Nathan Lyle Karstens Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2007 DeepFreeze: a management interface for ISEAGE Nathan Lyle Karstens Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Computer Sciences Commons Recommended Citation Karstens, Nathan Lyle, "DeepFreeze: a management interface for ISEAGE" (2007). Retrospective Theses and Dissertations. 14559. https://lib.dr.iastate.edu/rtd/14559 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. DeepFreeze: a management interface for ISEAGE by Nathan Lyle Karstens A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Co-majors: Information Assurance; Computer Engineering Program of Study Committee: Doug W Jacobson, Major Professor Thomas Earl Daniels Johnny S Wong Iowa State University Ames, Iowa 2007 Copyright © Nathan Lyle Karstens, 2007. All rights reserved. UMI Number: 1443093 UMI Microform 1443093 Copyright 2007 by ProQuest Information and Learning Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. ProQuest Information and Learning Company -
Chapter 5. Writing Your Own Shell
Chapter 5. Writing Your Own Shell You really understand something until you program it. GRR Introduction Last chapter covered how to use a shell program using UNIX commands. The shell is a program that interacts with the user through a terminal or takes the input from a file and executes a sequence of commands that are passed to the Operating System. In this chapter you are going to learn how to write your own shell program. Shell Programs A shell program is an application that allows interacting with the computer. In a shell the user can run programs and also redirect the input to come from a file and output to come from a file. Shells also provide programming constructions such as if, for, while, functions, variables etc. Additionally, shell programs offer features such as line editing, history, file completion, wildcards, environment variable expansion, and programing constructions. Here is a list of the most popular shell programs in UNIX: sh Shell Program. The original shell program in UNIX. csh C Shell. An improved version of sh. tcsh A version of Csh that has line editing. ksh Korn Shell. The father of all advanced shells. bash The GNU shell. Takes the best of all shell programs. It is currently the most common shell program. In addition to commandline shells, there are also Graphical Shells such as the Windows Desktop, MacOS Finder, or Linux Gnome and KDE that simplify theDraft use of computers for most of the users. However, these graphical shells are not substitute to command line shells for power users who want to execute complex sequences of commands repeatedly or with parameters not available in the friendly, but limited graphical dialogs and controls. -
Essential Skills for Bioinformatics: Unix/Linux PIPES a Simple Program with Grep and Pipes
Essential Skills for Bioinformatics: Unix/Linux PIPES A simple program with grep and pipes • Suppose we are working with a FASTA file and a program warns that it contains non-nucleotide characters in sequences. We can check for non-nucleotide characters easily with a Unix one-liner using pipes and the grep. • The grep Unix tool searches files or standard input for strings that match patterns. These patterns can be simple strings, or regular expressions. See man grep for more details. A simple program with grep and pipes • tb1-protein.fasta • Approach: - remove all header lines (those that begin with >) - the remaining sequences are piped to grep - print lines containing non-nucleotide characters A simple program with grep and pipes • “^>”: regular expression pattern which matches all lines that start with a > character. • -v: invert the matching lines because we want to exclude lines starting with > • |: pipe the standard output to the next command with the pipe character | • “[^ACGT]”: When used in brackets, a caret symbol (^) matches anything that’s not one of the characters in these brackets. [^ACGT] matches any character that’s not A, C, G, or T. • -i: We ignore case. • --color: to color the matching non-nucleotide character. • Both regular expressions are in quotes, which is a good habit to get into. Combining pipes and redirection • Large bioinformatics programs will often use multiple streams simultaneously. Results are output via the standard output stream while diagnostic messages, warnings, or errors are output to the standard error stream. In such cases, we need to combine pipes and redirection to manage all streams from a running program.