The Evolutionary Roots of Human Hyper-Cognition
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Natural Selection and Adaptation, Part I
Natural Selection and Adaptation, Part I 36-149 The Tree of Life Christopher R. Genovese Department of Statistics 132H Baker Hall x8-7836 http://www.stat.cmu.edu/~genovese/ . Plan • Review of Natural Selection • Detecting Natural Selection (discussion) • Examples of Observed Natural Selection ............................... Next Time: • Adaptive Traits • Methods for Reasoning about and studying adaptations • Explaining Complex Adaptations (discussion) 36-149 The Tree of Life Class #10 -1- Overview The theories of common descent and natural selection play different roles within the theory of evolution. Common Descent explains the unity of life. Natural Selection explains the diversity of life. An adaptation (or adaptive trait) is a feature of an organism that enhances reproductive success, relative to other possible variants, in a given environment. Adaptations become prevalent and are maintained in a population through natural selection. Indeed, natural selection is the only mechanism of evolutionary change that can satisfactorily explain adaptations. 36-149 The Tree of Life Class #10 -2- Darwin's Argument Darwin put forward two main arguments in support of natural selection: An analogical argument: Artificial selection A logical argument: The struggle for existence (As we will see later, we now have more than just argument in support of the theory.) 36-149 The Tree of Life Class #10 -3- The Analogical Argument: Artificial Selection 36-149 The Tree of Life Class #10 -4- The Analogical Argument: Artificial Selection 36-149 The Tree of Life Class #10 -5- The Analogical Argument: Artificial Selection Teosinte to Corn 36-149 The Tree of Life Class #10 -6- The Analogical Argument: Artificial Selection • Darwin was intimately familiar with the efforts of breeders in his day to produce novel varieties. -
1. Adaptation and the Evolution of Physiological Characters
Bennett, A. F. 1997. Adaptation and the evolution of physiological characters, pp. 3-16. In: Handbook of Physiology, Sect. 13: Comparative Physiology. W. H. Dantzler, ed. Oxford Univ. Press, New York. 1. Adaptation and the evolution of physiological characters Department of Ecology and Evolutionary Biology, University of California, ALBERT F. BENNETT 1 Irvine, California among the biological sciences (for example, behavioral CHAPTER CONTENTS science [I241). The Many meanings of "Adaptationn In general, comparative physiologists have been Criticisms of Adaptive Interpretations much more successful in, and have devoted much more Alternatives to Adaptive Explanations energy to, pursuing the former rather than the latter Historical inheritance goal (37). Most of this Handbook is devoted to an Developmentai pattern and constraint Physical and biomechanical correlation examination of mechanism-how various physiologi- Phenotypic size correlation cal systems function in various animals. Such compara- Genetic correlations tive studies are usually interpreted within a specific Chance fixation evolutionary context, that of adaptation. That is, or- Studying the Evolution of Physiological Characters ganisms are asserted to be designed in the ways they Macroevolutionary studies Microevolutionary studies are and to function in the ways they do because of Incorporating an Evolutionary Perspective into Physiological Studies natural selection which results in evolutionary change. The principal textbooks in the field (for example, refs. 33, 52, 102, 115) make explicit reference in their titles to the importance of adaptation to comparative COMPARATIVE PHYSIOLOGISTS HAVE TWO GOALS. The physiology, as did the last comparative section of this first is to explain mechanism, the study of how organ- Handbook (32). Adaptive evolutionary explanations isms are built functionally, "how animals work" (113). -
Evolutionary and Historical Biogeography of Animal Diversity Learning Objectives
Evolutionary and historical biogeography of animal diversity Learning objectives • The students can explain the common ancestor of animal kingdom. • The students can explain the historical biogeography of animal. • The students can explain the invasion of animal from aquatic to terrestrial habitat. • The students can explain the basic mechanism of speciation, allopatric and non-allopatric. The Common Ancestor of Animal Kingdom Characteristics of Animals • Animals or “metazoans” are typically heterotrophic, multicellular organisms with diploid, eukaryotic cells. • Trichoplax adhaerens is defined as an animal by the presence of different somatic (i.e., non-reproductive) cell types and by impermeable cell–cell connections. Trichoplax adhaerens Blackstone, 2009 Two Hypotheses for the Branching Order of Groups at the Root of the Metazoan Tree 1 2 The choanoflagellates serve as an outgroup in the Bilaterians are the sister group to the placozoan + analysis, and sponges are the sister group to the sponge + ctenophore + cnidarian clade, while placozoans placozoan + cnidarian + ctenophore + bilaterian are the sister group to the sponge + ctenophore + clade. cnidarian clade. Blackstone, 2009 Ancestry and evolution of animal–bacterial interactions • Choanoflagellates as the last common ancestor of animal kingdom. • Urmetazoan is the group of animal with multicellular and produce differentiated cell types (ex. Egg & sperm) R.A. Alegado & N. King, 2014 Conserved morphology and ultrastructure of Choanoflagellates and Sponge choanocytes The collar complex is conserved in choanoflagellates (A. S. rosetta) and sponge collar cells (B. Sycon coactum) flagellum (fL), microvilli (mv), a nucleus (nu), and a food vacuole (fv) Brunet & King, 2017 The Historical Biogeography of Animal Zoogeographic regions Old New Cox, 2001 Plate tectonic regulation of global marine animal diversity A. -
Reducing Risks Through Adaptation Actions | Fourth National Climate
Impacts, Risks, and Adaptation in the United States: Fourth National Climate Assessment, Volume II 28 Reducing Risks Through Adaptation Actions Federal Coordinating Lead Authors Review Editor Jeffrey Arnold Mary Ann Lazarus U.S. Army Corps of Engineers Cameron MacAllister Group Roger Pulwarty National Oceanic and Atmospheric Administration Chapter Lead Robert Lempert RAND Corporation Chapter Authors Kate Gordon Paulson Institute Katherine Greig Wharton Risk Management and Decision Processes Center at University of Pennsylvania (formerly New York City Mayor’s Office of Recovery and Resiliency) Cat Hawkins Hoffman National Park Service Dale Sands Village of Deer Park, Illinois Caitlin Werrell The Center for Climate and Security Technical Contributors are listed at the end of the chapter. Recommended Citation for Chapter Lempert, R., J. Arnold, R. Pulwarty, K. Gordon, K. Greig, C. Hawkins Hoffman, D. Sands, and C. Werrell, 2018: Reducing Risks Through Adaptation Actions. In Impacts, Risks, and Adaptation in the United States: Fourth National Climate Assessment, Volume II [Reidmiller, D.R., C.W. Avery, D.R. Easterling, K.E. Kunkel, K.L.M. Lewis, T.K. Maycock, and B.C. Stewart (eds.)]. U.S. Global Change Research Program, Washington, DC, USA, pp. 1309–1345. doi: 10.7930/NCA4.2018.CH28 On the Web: https://nca2018.globalchange.gov/chapter/adaptation Impacts, Risks, and Adaptation in the United States: Fourth National Climate Assessment, Volume II 28 Reducing Risks Through Adaptation Actions Key Message 1 Seawall surrounding Kivalina, Alaska Adaptation Implementation Is Increasing Adaptation planning and implementation activities are occurring across the United States in the public, private, and nonprofit sectors. Since the Third National Climate Assessment, implementation has increased but is not yet commonplace. -
General Adaptation Guidance: a Guide to Adapting Evidence-Based Sexual Health Curricula
General Adaptation Guidance: A Guide to Adapting Evidence-Based Sexual Health Curricula Adaptation Kit Tools and Resources for Making Informed Adaptations s Evidence-Based ProgramAn ed A An Evidence-BasedAn Program Evidence Based Program Adaptation Kit Tools and Resources for Making InformedAdaptation Adaptations Kit Tools and Resources for Making Informed Adaptations - Nicole Lezin Lori Rolleri For more information, contact: Julie Taylor More information about adaptation guidelines is available at ReCAPP, www.etr.org/recapp Regina Firpo-Triplett, MPH, CHES ETR [email protected], www.etr.org/recapp Taleria R. Fuller, PhD CDC Division of Reproductive Health [email protected], www.cdc.gov/teenpregnancy/ Spring 2012 Funding was made possible by Contract #GS10F0171T from the Centers for Disease Control and Prevention (CDC). About this Guide and the Adaptation Project Using an evidence-based intervention or EBI (a program that has been shown through rigorous evaluation to be effective at changing risk-taking behavior) assures that intervention efforts are devoted to what has been proven to work. Most practitioners make adaptations to EBIs to meet the unique characteristics of their local populations or projects. However, while this is a common practice, making changes to an EBI without a clear understanding of its core components can compromise the program’s effectiveness. ETR Associates, with funding from and in collaboration with the CDC Division of Reproductive Health (DRH), has developed guidelines on how to make appropriate adaptations to sexual health EBIs without sacrificing their core components. This guide provides general green (safe), yellow (proceed with caution) and red (unsafe) light adaptation guidance for practitioners considering making adaptations to sexual health EBIs. -
An Introduction to Sociobiology: Inclusive Fitness and the Core Genome Herbert Gintis
An Introduction to Sociobiology: Inclusive Fitness and the Core Genome Herbert Gintis June 29, 2013 The besetting danger is ...mistaking part of the truth for the whole...in every one of the leading controversies...both sides were in the right in what they affirmed, though wrong in what they denied John Stuart Mill, On Coleridge, 1867 A Mendelian populationhas a common gene pool, whichis itscollective or corporate genotype. Theodosius Dobzhansky, Cold Springs Harbor Symposium, 1953. The interaction between regulator and structural genes... [reinforces] the concept that the genotype of the individual is a whole. Ernst Mayr, Populations, Species and Evolution, 1970 Abstract This paper develops inclusive fitness theory with the aim of clarifying its appropriate place in sociobiological theory and specifying the associated principles that render it powerful. The paper introduces one new concept, that of the core genome. Treating the core genome as a unit of selection solves problems concerning levels of selection in evolution. 1 Summary Sociobiology is the study of biological interaction, both intragenomic, among loci in the genome, and intergenomic, among individuals in a reproductive popula- tion (Gardner et al. 2007). William Hamilton (1964) extended the theory of gene frequencies developed in the first half of the Twentieth century (Crow and I would like to thank Samuel Bowles, Eric Charnov, Steven Frank, Michael Ghiselin, Peter Godfrey-Smith, David Haig, David Queller, Laurent Lehmann, Samir Okasha, Peter Richerson, Joan Roughgarden, Elliot Sober, David Van Dyken, Mattijs van Veelen and Edward O. Wilson for advice in preparing this paper. 1 Kimura 1970, B¨urger 2000, Provine 2001) to deal with such behavior. -
The New Adaptation Marketplace: Climate Change and Opportunities for Green Economic Growth
The new adaptation marketplace: Climate change and opportunities for green economic growth Climate change is a growing humanitarian crisis that we cannot ignore. Developing innovative ways to adapt to its impacts is a necessity. Policies that address the impact of global warming on the world’s most vulnerable communities can drive the market toward new innovation and stimulate the US economy. It is critical that we make investments in what are known By investing in adaptation strategies, such as flood defenses as “climate change preparedness” or “adaptation” measures. and efficient irrigation systems, not only can we lessen the These strategies can help reduce the risk of harm to vulner- impact of future natural disasters, but we can drive economic able communities by building resilience to the impacts of growth by strengthening infrastructure and spurring the climate change. For example, one adaptation approach en- development of new technologies. Strong public policies that ables people in coastal areas to construct or strengthen homes provide funding for adaptation have multiple benefits, both that can withstand stronger storms and increased flooding. in the US and abroad. These include the following: Even with aggressive efforts to reduce emissions, the • Encouraging companies to develop new, innovative consequences of climate change will be severe; increased technologies and to hire new workers, creating jobs and temperatures, rising sea levels, and more intense droughts, stimulating the economy; floods, and storms threaten the existence of many communi- • Enabling long-term economic growth built around green ties—especially in developing countries. Adaptation efforts technologies that are resilient to climate change; reflect the unavoidable fact that the situation is already bad • Helping vulnerable communities in the US and around the enough. -
Adaptation, Natural Selection and Evolution Learning Intentions • Give the Meaning of the Term Mutation
Adaptation, natural selection and evolution Learning Intentions • Give the meaning of the term mutation. • State that mutations may be neutral, confer an advantage or a disadvantage. • State that mutations are spontaneous and are the only source of new alleles. • Give two environmental factors which can increase the rate of mutation. • Give the meaning of the term adaptation. • Give examples of adaptations which allow a species to survive. • State that adaptation may be structural, physiological or behavioural. • Describe examples of behaviours which allow a species to survive. • State that variation within a population makes it possible for a population to evolve over time in response to changing conditions. • Describe natural selection/survival of the fittest. • Describe the process of speciation. Mutation • A mutation is a random change to the genetic material of an organism • Mutations are rare, random and spontaneous • Mutations can alter the phenotype or functioning of the organism. • Mutations which occur in sex cells are inherited by offspring, they are the only source of new alleles, and can alter the phenotype or functioning of the organism. Types of Mutation • Mutations can be neutral, an advantage or a disadvantage • Neutral – these have no effect on the organism • Confer an advantage – for example the peppered moth mutation which made moths dark in colour – this allowed them to be camouflaged in industrial areas with soot covering trees • Confer a disadvantage – for example a gene mutation in chromosome 7 in humans leads to cystic fibrosis Moths…how many can you see? Mutagenic Agents • The rate of mutations can be artificially increased by environmental factors such as: – Radiation such as X-rays, UV light, gamma rays – Chemicals like colchicine, mustard gas and benzene. -
Social Selection and the Evolution of Maladaptation
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.12.435141; this version posted March 12, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Social Selection and the Evolution of Maladaptation Joel W. McGlothlin and David N. Fisher Department of Biological Sciences, Virginia Tech, Derring Hall Room 2125, 926 West Campus Drive (MC 0406), Blacksburg, VA 24061 (McGlothlin, e-mail: [email protected]) School of Biological Sciences, University of Aberdeen, King’s College, Aberdeen, United Kingdom AB24 3FX (Fisher, e-mail: [email protected]) Address correspondence to J. McGlothlin at the address above, or e-mail: [email protected] Running title: Social Selection and Maladaptation 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.12.435141; this version posted March 12, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Abstract 2 Evolution by natural selection is often viewed as a process that inevitably leads to 3 adaptation, or an increase in population fitness over time. However, maladaptation, 4 an evolved decrease in fitness, may also occur in response to natural selection 5 under some conditions. Social effects on fitness (or social selection) have been 6 identified as a potential cause of maladaptation, but we lack a general rule identifying 7 when social selection should lead to a decrease in population mean fitness. -
Systematic Uncertainties and Domain Adaptation
Systematic Uncertainties and Domain Adaptation Michael Kagan SLAC Hammers and Nails July, 2017 2 The Goal ATLAS-CONF-2017-043 The Higgs Boson! 3 The Goal ATLAS-CONF-2017-043 The Higgs Boson! • Want to reject the “No Higgs” hypothesis ( + ) • Hopefully measure the size of the 4 The Goal ATLAS-CONF-2017-043 The Higgs Boson! • Need accurate predictions for and 5 The Goal ATLAS-CONF-2017-043 The Higgs Boson! • And we need to know how wrong these predictions could be… 6 Sources of Systematic Uncertainty ATLAS-CONF-2017-041 • Experimental – How well we understand the detector and our ability to identify / measure properties of particles given that they are present • Theoretical – How well we understand the underlying theoretical model of the physical processes • Modeling uncertainties – How well can I constrain backgrounds in alternate data measurements / control regions Error Propagation 7 • Random variables x={x1, x2, … , xn} distributed according to p(x) – Assume we only know E[x] = µ and Var[xi, xj] = Vij • For some function f(x), first order approximation N @f f(x) f(µ)+ (xi µi) ⇡ @xi x=µ − i=1 X • Then E[f(x)] f(µ) ⇡ N 2 2 @f @f σf = E[(f(x) f(µ)) ] Vij − ⇡ @x @x x=µ i, j=1 i j X h i Error Propagation 8 • Often, we only have samples of x • But we know how x varies under some uncertainty – x → x ± Δx – Where Δx is a 1 standard deviation change in x • Then often approximate the error on f(x) with – ±Δf(x) = f(x ± Δx ) – f(x) • So we vary x and see how f(x) changes – Often histogram the distributions, showing ±Δf(x) as a band on the histogram -
Sexual Selection, Speciation and Constraints on Geographical Range Overlap in Birds Christopher Cooney
Washington University in St. Louis Washington University Open Scholarship Biology Faculty Publications & Presentations Biology 5-16-2017 Sexual selection, speciation and constraints on geographical range overlap in birds Christopher Cooney Joseph A. Tobias Jason T. Weir Carlos A. Botero Washington University in St. Louis, [email protected] Nathalie Seddon Follow this and additional works at: https://openscholarship.wustl.edu/bio_facpubs Part of the Behavior and Ethology Commons, Biology Commons, and the Population Biology Commons Recommended Citation Cooney, Christopher; Tobias, Joseph A.; Weir, Jason T.; Botero, Carlos A.; and Seddon, Nathalie, "Sexual selection, speciation and constraints on geographical range overlap in birds" (2017). Biology Faculty Publications & Presentations. 139. https://openscholarship.wustl.edu/bio_facpubs/139 This Article is brought to you for free and open access by the Biology at Washington University Open Scholarship. It has been accepted for inclusion in Biology Faculty Publications & Presentations by an authorized administrator of Washington University Open Scholarship. For more information, please contact [email protected]. 1 Sexual selection, speciation, and constraints on geographical 2 range overlap in birds 3 4 Christopher R. Cooney1,2*, Joseph A. Tobias1,3, Jason T. Weir4, Carlos A. Botero5 & 5 Nathalie Seddon1 6 7 1Edward Grey Institute, Department of Zoology, University of Oxford, South Parks Road, 8 Oxford OX1 3PS, UK. 9 2Department of Animal and Plant Sciences, University of Sheffield, Western Bank, 10 Sheffield S10 2TN, UK. 11 3Department of Life Sciences, Imperial College London, Silwood Park, Buckhurst Road, 12 Ascot, Berkshire, SL5 7PY, UK. 13 4Department Ecology and Evolution and Department of Biological Sciences, University of 14 Toronto Scarborough, Toronto, ON M1C 1A4, Canada. -
Lecture 13 Leks, Adaptation, Phylogenetic Tests
Lecture Outline Reasons for Lek Polygyny Alternative mating strategies Adaptive versus Non-adaptive hypotheses Using phylogenetics to test hypotheses in behavioral ecology Lek Polygyny 1. Lek Polygyny: Sometimes males advertise to females with elaborate visual, acoustic, or olfactory displays. Males do not hunt for mates. Females watch males display at territories that do not contain food, nesting sites, or anything useful. 2. Sometimes males aggregate into groups and each male defends a small territory that contains no resources at all-sometimes just a bare patch of ground. a. When territories are clumped in a display area = a lek. 2. Male mating success is highly skewed on lecks a. Manakins: males jump between perches, snapping. feathers. At a lek of 10, there were 438 copulations. One male = 75%, second male = 13%, six others = 10%. Leks Mating success if usually strongly skewed on leks with the majority of matings going to a small proportion of males. 3 Leks 1. Leks have been reported in only 7 species of mammals and 35 species of birds 2. Thought to occur when males are unable to defend economically either the females themselves or the resources they require a. In both antelope and grouse, the lekking species are those with the largest female home ranges. b. In Uganda kob, topi and fallow deer, males lek at high population densities but defend territories or harems at low densities. Why Lek? 1. Why do males all congregate to display? Lots of competition. 2. Hotspot hypothesis: females tend to travel along certain routes and males congregate where routes intersect.