Human and Monkey Lenses Cultured with Calcium Ionophore Form B
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1 Evidence for Gliadin Antibodies As Causative Agents in Schizophrenia
1 Evidence for gliadin antibodies as causative agents in schizophrenia. C.J.Carter PolygenicPathways, 20 Upper Maze Hill, Saint-Leonard’s on Sea, East Sussex, TN37 0LG [email protected] Tel: 0044 (0)1424 422201 I have no fax Abstract Antibodies to gliadin, a component of gluten, have frequently been reported in schizophrenia patients, and in some cases remission has been noted following the instigation of a gluten free diet. Gliadin is a highly immunogenic protein, and B cell epitopes along its entire immunogenic length are homologous to the products of numerous proteins relevant to schizophrenia (p = 0.012 to 3e-25). These include members of the DISC1 interactome, of glutamate, dopamine and neuregulin signalling networks, and of pathways involved in plasticity, dendritic growth or myelination. Antibodies to gliadin are likely to cross react with these key proteins, as has already been observed with synapsin 1 and calreticulin. Gliadin may thus be a causative agent in schizophrenia, under certain genetic and immunological conditions, producing its effects via antibody mediated knockdown of multiple proteins relevant to the disease process. Because of such homology, an autoimmune response may be sustained by the human antigens that resemble gliadin itself, a scenario supported by many reports of immune activation both in the brain and in lymphocytes in schizophrenia. Gluten free diets and removal of such antibodies may be of therapeutic benefit in certain cases of schizophrenia. 2 Introduction A number of studies from China, Norway, and the USA have reported the presence of gliadin antibodies in schizophrenia 1-5. Gliadin is a component of gluten, intolerance to which is implicated in coeliac disease 6. -
Supplemental Materials Supplemental Table 1
Electronic Supplementary Material (ESI) for RSC Advances. This journal is © The Royal Society of Chemistry 2016 Supplemental Materials Supplemental Table 1. The differentially expressed proteins from rat pancreas identified by proteomics (SAP vs. SO) No. Protein name Gene name ratio P value 1 Metallothionein Mt1m 3.35 6.34E-07 2 Neutrophil antibiotic peptide NP-2 Defa 3.3 8.39E-07 3 Ilf2 protein Ilf2 3.18 1.75E-06 4 Numb isoform o/o rCG 3.12 2.73E-06 5 Lysozyme Lyz2 3.01 5.63E-06 6 Glucagon Gcg 2.89 1.17E-05 7 Serine protease HTRA1 Htra1 2.75 2.97E-05 8 Alpha 2 macroglobulin cardiac isoform (Fragment) 2.75 2.97E-05 9 Myosin IF (Predicted) Myo1f 2.65 5.53E-05 10 Neuroendocrine secretory protein 55 Gnas 2.61 7.60E-05 11 Matrix metallopeptidase 8 Mmp8 2.57 9.47E-05 12 Protein Tnks1bp1 Tnks1bp1 2.53 1.22E-04 13 Alpha-parvin Parva 2.47 1.78E-04 14 C4b-binding protein alpha chain C4bpa 2.42 2.53E-04 15 Protein KTI12 homolog Kti12 2.41 2.74E-04 16 Protein Rab11fip5 Rab11fip5 2.41 2.84E-04 17 Protein Mcpt1l3 Mcpt1l3 2.33 4.43E-04 18 Phospholipase B-like 1 Plbd1 2.33 4.76E-04 Aldehyde dehydrogenase (NAD), cytosolic 19 2.32 4.93E-04 (Fragments) 20 Protein Dpy19l2 Dpy19l2 2.3 5.68E-04 21 Regenerating islet-derived 3 alpha, isoform CRA_a Reg3a 2.27 6.74E-04 22 60S acidic ribosomal protein P1 Rplp1 2.26 7.22E-04 23 Serum albumin Alb 2.25 7.98E-04 24 Ribonuclease 4 Rnase4 2.24 8.25E-04 25 Cct-5 protein (Fragment) Cct5 2.24 8.52E-04 26 Protein S100-A9 S100a9 2.22 9.71E-04 27 Creatine kinase M-type Ckm 2.21 1.00E-03 28 Protein Larp4b Larp4b 2.18 1.25E-03 -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
The Role of Amino Acids in Liver Protein Metabolism Under a High Protein Diet
The role of amino acids in liver protein metabolism under a high protein diet : identification of amino acids signal and associated transduction pathways Nattida Chotechuang To cite this version: Nattida Chotechuang. The role of amino acids in liver protein metabolism under a high protein diet : identification of amino acids signal and associated transduction pathways. Food and Nutrition. AgroParisTech, 2010. English. NNT : 2010AGPT0026. pastel-00610998 HAL Id: pastel-00610998 https://pastel.archives-ouvertes.fr/pastel-00610998 Submitted on 25 Jul 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. N° /__/__/__/__/__/__/__/__/__/__/ T H E S I S submitted to obtain the degree of Doctor of Philosophy at L’Institut des Sciences et Industries du Vivant et de l’Environnement (AgroParisTech) Speciality: Nutrition Science Presented and defended in public by Nattida CHOTECHUANG on 22nd March 2010 THE ROLE OF AMINO ACIDS IN LIVER PROTEIN METABOLISM UNDER A HIGH PROTEIN DIET: IDENTIFICATION OF AMINO ACIDS SIGNAL AND ASSOCIATED TRANSDUCTION PATHWAYS Thesis director: Daniel TOMÉ Thesis co-director: Dalila AZZOUT-MARNICHE AgroParisTech, UMR914 Nutrition Physiology and Ingestive Behaviour, F-75005 Paris to the jury: Mr. -
REVIEW ARTICLE High Molecular Mass Intracellular Proteases
Biochem J. (1989) 263, 625-633 (Printed in Great Britain) 625 REVIEW ARTICLE High molecular mass intracellular proteases A. Jennifer RIVETT Department of Biochemistry, University of Leicester, Leicester LE'l 7RH, U.K. INTRODUCTION demonstrated that intracellular proteolysis is not re- Many of the well-characterized proteolytic enzymes, stricted to the lysosomes. Since a large proportion of and particularly those for which X-ray structures are intracellular protein breakdown, especially the degra- now available, are small monomeric enzymes often dation of proteins with short half-lives, is now known to having molecular masses in the range of 20-30 kDa. occur by nonlysosomal mechanisms (Mayer & Doherty, Many of them are extracellular enzymes which are easy 1986; Bond & Beynon, 1987; Rechsteiner, 1987; Bohley, to assay and to purify. With a growing awareness of the 1987; Rivett, 1989b; Katunuma & Kominami, 1989; importance of intracellular protein turnover and Knecht & Grisolia, 1989), there is now a greater interest mechanisms of intracellular protein breakdown, interest in nonlysosomal degradation systems and in nonlyso- in the proteases responsible has also increased. Although somal proteinases, many of which have large complex some intracellular proteases, especially those found structures. within the lysosomes in animal cells, are, like extracellular In contrast to the well-known lysosomal proteases, proteases, small and highly active monomeric enzymes, soluble extralysosomal proteases often have multimeric a number of cellular proteases -
Carboxypeptidase E: a Negative Regulator of the Canonical Wnt Signaling Pathway
Oncogene (2013) 32, 2836–2847 & 2013 Macmillan Publishers Limited All rights reserved 0950-9232/13 www.nature.com/onc ORIGINAL ARTICLE Carboxypeptidase E: a negative regulator of the canonical Wnt signaling pathway N Skalka1, M Caspi1, E Caspi1, YP Loh2 and R Rosin-Arbesfeld1 Aberrant activation of the canonical Wnt signal transduction pathway is involved in many diseases including cancer and is especially implicated in the development and progression of colorectal cancer. The key effector protein of the canonical Wnt pathway is b-catenin, which functions with T-cell factor/lymphoid enhancer factor to activate expression of Wnt target genes. In this study, we used a new functional screen based on cell survival in the presence of cDNAs encoding proteins that activate the Wnt pathway thus identifying novel Wnt signaling components. Here we identify carboxypeptidase E (|CPE) and its splice variant, DN-CPE, as novel regulators of the Wnt pathway. We show that whereas DN-CPE activates the Wnt signal, the full-length CPE (F-CPE) protein is an inhibitor of Wnt/b-catenin signaling. F-CPE forms a complex with the Wnt3a ligand and the Frizzled receptor. Moreover, F-CPE disrupts disheveled-induced signalosomes that are important for transducing the Wnt signal and reduces b-catenin protein levels and activity. Taken together, our data indicate that F-CPE and DN-CPE regulate the canonical Wnt signaling pathway negatively and positively, respectively, and demonstrate that this screening approach can be a rapid means for isolation of novel Wnt signaling components. Oncogene (2013) 32, 2836–2847; doi:10.1038/onc.2012.308; published online 23 July 2012 Keywords: Wnt signaling; carboxypeptidase E (CPE); b-catenin; functional screen INTRODUCTION target genes. -
Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients with Stable Coronary Heart Disease
Supplementary Online Content Ganz P, Heidecker B, Hveem K, et al. Development and validation of a protein-based risk score for cardiovascular outcomes among patients with stable coronary heart disease. JAMA. doi: 10.1001/jama.2016.5951 eTable 1. List of 1130 Proteins Measured by Somalogic’s Modified Aptamer-Based Proteomic Assay eTable 2. Coefficients for Weibull Recalibration Model Applied to 9-Protein Model eFigure 1. Median Protein Levels in Derivation and Validation Cohort eTable 3. Coefficients for the Recalibration Model Applied to Refit Framingham eFigure 2. Calibration Plots for the Refit Framingham Model eTable 4. List of 200 Proteins Associated With the Risk of MI, Stroke, Heart Failure, and Death eFigure 3. Hazard Ratios of Lasso Selected Proteins for Primary End Point of MI, Stroke, Heart Failure, and Death eFigure 4. 9-Protein Prognostic Model Hazard Ratios Adjusted for Framingham Variables eFigure 5. 9-Protein Risk Scores by Event Type This supplementary material has been provided by the authors to give readers additional information about their work. Downloaded From: https://jamanetwork.com/ on 10/02/2021 Supplemental Material Table of Contents 1 Study Design and Data Processing ......................................................................................................... 3 2 Table of 1130 Proteins Measured .......................................................................................................... 4 3 Variable Selection and Statistical Modeling ........................................................................................ -
Novel Pathways in Fatty-Acid Induced Apoptosis in the Pancreatic Beta-Cell
Novel pathways in fatty-acid induced apoptosis in the pancreatic beta-cell by KRISTIN DANIELLE JEFFREY B.Sc, University of Ottawa, 2004 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE in THE FACULTY OF GRADUATE STUDIES (Physiology) University of British Columbia January 2007 ©Kristin Danielle Jeffrey, 2007 Abstract Pancreatic P-cell death is a critical event in the pathogenesis of all forms of diabetes. Type 2 diabetes is caused by the combination of acquired factors such as elevated circulating fatty acids as well as genetic factors. In this study, we show that the free fatty acid palmitate increases markers of endoplasmic stress and apoptosis in pancreatic P-cells. Carboxypeptidase E (CPE), an enzyme involved in the processing of insulin, was identified as the major down-regulated protein spot during palmitate-induced apoptosis using Cy-dye 2D gel proteomics in both the MIN6 P-cell line and human islets. Using MIN6 cells treated with 1.5 mM palmitate complexed to BSA (6:1), a significant decrease in total carboxypeptidase E protein was confirmed through Western blots. The decrease in CPE was seen in the presence of palmitate at both low and high glucose and was not affected in high glucose alone or with the ER-stress inducer, thapsigargin. Palmitate-induced changes in carboxypeptidase E were present after 2 hours, while CHOP, a marker of ER-stress, was not expressed until after 6 hours of incubation, suggesting that the decrease in CPE occurs before ER-stress. This finding, together with experiments using protein synthesis inhibitors and RT-PCR suggested that CPE was likely regulated at the post-translational level. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Downloaded from Bioscientifica.Com at 09/25/2021 06:33:18PM Via Free Access 666 LO’DRISCOLL, P GAMMELL and Others
665 Phenotypic and global gene expression profile changes between low passage and high passage MIN-6 cells Lorraine O’Driscoll*, Patrick Gammell*, Eadaoin McKiernan, Eoin Ryan, Per Bendix Jeppesen1, Sweta Rani and Martin Clynes National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin 9, Ireland 1Department of Endocrinology and Metabolism C, Aarhus University Hospital, Aarhus Sygehus THG, DK-Aarhus C, Denmark (Requests for offprints should be addressed to L O’Driscoll; Email: [email protected]) *(L O’Driscoll and P Gammell contributed equally to this work) Abstract The long-term potential to routinely use replacement b bioinformatics and real-time PCR technologies. Long-term cells/islets as cell therapy for type 1 diabetes relies on our culture was found to be associated with many phenotypic ability to culture such cells/islets, in vitro, while maintaining changes, including changes in growth rate and cellular their functional status. Previous b cell studies, by ourselves morphology, as well as loss of GSIS. Microarray analyses and other researchers, have indicated that the glucose- indicate expression of many mRNAs, including many stimulated insulin secretion (GSIS) phenotype is relatively involved in regulated secretion, adhesion and proliferation, unstable, in long-term culture. This study aimed to to be significantly affected by passaging/ long-term culture. investigate phenotypic and gene expression changes associ- Loss/reduced levels, in high passage cells, of certain ated with this loss of GSIS, using the MIN-6 cell line as transcripts associated with the mature b cell, together with model. Phenotypic differences between MIN-6(L, low increased levels of neuron/glia-associated mRNAs, suggest passage) and MIN-6(H, high passage) were determined by that, with time in culture, MIN-6 cells may revert to an early ELISA (assessing GSIS and cellular (pro)insulin content), (possibly multi-potential), poorly differentiated, ‘precursor- proliferation assays, phase contrast light microscopy and like’ cell type. -
©Ferrata Storti Foundation
Original Articles T-cell/histiocyte-rich large B-cell lymphoma shows transcriptional features suggestive of a tolerogenic host immune response Peter Van Loo,1,2,3 Thomas Tousseyn,4 Vera Vanhentenrijk,4 Daan Dierickx,5 Agnieszka Malecka,6 Isabelle Vanden Bempt,4 Gregor Verhoef,5 Jan Delabie,6 Peter Marynen,1,2 Patrick Matthys,7 and Chris De Wolf-Peeters4 1Department of Molecular and Developmental Genetics, VIB, Leuven, Belgium; 2Department of Human Genetics, K.U.Leuven, Leuven, Belgium; 3Bioinformatics Group, Department of Electrical Engineering, K.U.Leuven, Leuven, Belgium; 4Department of Pathology, University Hospitals K.U.Leuven, Leuven, Belgium; 5Department of Hematology, University Hospitals K.U.Leuven, Leuven, Belgium; 6Department of Pathology, The Norwegian Radium Hospital, University of Oslo, Oslo, Norway, and 7Department of Microbiology and Immunology, Rega Institute for Medical Research, K.U.Leuven, Leuven, Belgium Citation: Van Loo P, Tousseyn T, Vanhentenrijk V, Dierickx D, Malecka A, Vanden Bempt I, Verhoef G, Delabie J, Marynen P, Matthys P, and De Wolf-Peeters C. T-cell/histiocyte-rich large B-cell lymphoma shows transcriptional features suggestive of a tolero- genic host immune response. Haematologica. 2010;95:440-448. doi:10.3324/haematol.2009.009647 The Online Supplementary Tables S1-5 are in separate PDF files Supplementary Design and Methods One microgram of total RNA was reverse transcribed using random primers and SuperScript II (Invitrogen, Merelbeke, Validation of microarray results by real-time quantitative Belgium), as recommended by the manufacturer. Relative reverse transcriptase polymerase chain reaction quantification was subsequently performed using the compar- Ten genes measured by microarray gene expression profil- ative CT method (see User Bulletin #2: Relative Quantitation ing were validated by real-time quantitative reverse transcrip- of Gene Expression, Applied Biosystems). -
Companion Animals: Nutrition & Health
T28 Relationship between calpastatin gene polymorphism and T29 Corn oil or Corn grain supplementation to forage-nished beef cattle growth, carcass and meat quality traits. L. Suguisawa, steers. IV. Effects on gene expression of lipogenic enzymes in the A. A. Souza*, H. N. Oliveira, A. C. Silveira, and R. A. Cury, São s.c. adipose tissue. E. Pavan*1,2, S. Joseph1, K. Robbins1, S. Duckett3, Paulo State University, Brazil. and R. Rekaya1, 1University of Georgia, Athens, 2INTA, Balcarce, Bs. As., Arg., 3Clemson University, Clemson, SC. The Calpastatin polymorphism was associated with performance and meat quality traits, by Chung et al. (2001) methodology, in 300 Samples of s.c. fat were obtained from 28 Angus steers after slaughter bullocks. To validate this nding, we looked at a group of animals to determine the effect of energy supplementation of steers grazing (126 Angus Nellore, 10 Angus, 18 Brangus, 24 Simmental Nellore, tall fescue pastures. Steers (n = 8/ treatment; 289 ± 3.8 kg) were 12 Simental, 11 Simbrasil, 17 Santa Gertrudes Nellore, 18 Brown supplemented with either corn grain (0.52% BW; PC) or soybean hulls Swiss x Nelore, 12 Canchim, 16 Brahman Nellore and 36 Nellore). plus corn oil (0.45% BW + 0.10% corn oil; PO). Negative (pasture The animals were weaned at 7 months old at the creep-feeding and only; P) and positive (85% concentrate/15% roughage; C) controls raised at the feedlot system for 120 days. The animals were harvested were also included in the study. RNA was extracted from the s.c. with 450 kg live weight, 3 millimeters of ultrasound fat thickness adipose tissue using TRIzol reagent (Gibco Invitrogen Corp.).