The Orphan Immune Receptor LILRB3 Modulates Fc Receptor–Mediated Functions of Neutrophils
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Assessing the Tumor Microenvironment by Recovery of Immune Receptor V(D)J Recombination Reads from Tumor Specimen Exome Files
Assessing the Tumor Microenvironment by Recovery of Immune Receptor V(D)J Recombination Reads from Tumor Specimen Exome Files George Blanck, Ph.D. Professor, Molecular Medicine Morsani College of Medicine, USF Immunology Program, Moffitt Cancer Center (not for publication or public web page) Learning objectives: 1. To appreciate the availability of T-cell receptor recombination information from tumor specimen DNA samples. 2. To understand the correlation between T-cell receptor recombinations, in tumor specimen DNA, and other, clinically relevant information for bladder cancer and kidney renal cell carcinoma. 3. To understand the importance of HLA alleles in assessing the impact of T-cell receptor recombinations from tumor specimen DNA. Fig. 1. Immune receptor genes recombine during development to generate many different receptor molecules among the B-cells and T- cells, throughout the body, through life, to bind many different antigens, including tumor antigens. Seven immune receptor genes total: • Three related to antibodies, not further discussed. • Two related to gamma-delta T-cells, not further discussed • Two required for alpha-beta T-cells, the subject of this presentation. Alpha-beta T-cells: • Most numerous. • Best understood, medically speaking. • Generally target peptide antigen, in the case of tumors, a mutant peptide. • The TRB part of the TRA/TRB receptor is considered most important in antigen binding. The tumor specimen and the exome • Surgically remove tumor, obtain DNA sequence (all exons = exome), for tumor mutations, which can guide therapy. • Other cells in the specimen, particularly T-cells. • The DNA representing the T-cell receptor can be identified above the tumor DNA “background”. Fig. -
Transcriptional Control of Tissue-Resident Memory T Cell Generation
Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2019 © 2019 Filip Cvetkovski All rights reserved ABSTRACT Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Tissue-resident memory T cells (TRM) are a non-circulating subset of memory that are maintained at sites of pathogen entry and mediate optimal protection against reinfection. Lung TRM can be generated in response to respiratory infection or vaccination, however, the molecular pathways involved in CD4+TRM establishment have not been defined. Here, we performed transcriptional profiling of influenza-specific lung CD4+TRM following influenza infection to identify pathways implicated in CD4+TRM generation and homeostasis. Lung CD4+TRM displayed a unique transcriptional profile distinct from spleen memory, including up-regulation of a gene network induced by the transcription factor IRF4, a known regulator of effector T cell differentiation. In addition, the gene expression profile of lung CD4+TRM was enriched in gene sets previously described in tissue-resident regulatory T cells. Up-regulation of immunomodulatory molecules such as CTLA-4, PD-1, and ICOS, suggested a potential regulatory role for CD4+TRM in tissues. Using loss-of-function genetic experiments in mice, we demonstrate that IRF4 is required for the generation of lung-localized pathogen-specific effector CD4+T cells during acute influenza infection. Influenza-specific IRF4−/− T cells failed to fully express CD44, and maintained high levels of CD62L compared to wild type, suggesting a defect in complete differentiation into lung-tropic effector T cells. -
A New Role for NKG2D Signaling in CD8 T Cells and Autoimmune
A new role for NKG2D signaling in CD8+ T cells and autoimmune diabetes By Andrew P Trembath © 2019 Submitted to the graduate degree program in Microbiology, Molecular Genetics and Immunology, and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. Chair: Mary A. Markiewicz Ph.D Wolfram R. Zückert Ph.D. Patrick E. Fields, Ph.D. Maria Kalamvoki Ph.D. Joe Lutkenhaus Ph.D Date Defended: 11/13/2019 ii The dissertation committee for Andrew Trembath certifies that this is the approved version of the following dissertation: A new role for NKG2D signaling in CD8+ T cells and autoimmune diabetes Chair: Mary A. Markiewicz, Ph.D. Date Approved: 12/19/2019 iii Abstract The demands placed on the immune system are immense and highly complex. It must protect the body against untold threats while maintaining a balance between immune defense and autoimmune damage. One major player in immune recognition is the receptor Natural-Killer- Group-2-Member-D (NKG2D), best known for its expression on natural killer (NK) cells and CD8+ T cells, where it recognizes NKG2D ligands expressed by stressed cells following viral infection or cancerous transformation. NKG2D is most well studied for its role in tumor immunity, for which NKG2D based therapies are currently being developed clinically. Despite this, it is apparent that NKG2D has other poorly understood immune regulating functions, such as its implicated involvement in type 1diabetes and other autoimmune disorders. However, the mechanism by which NKG2D signaling affects diabetes has been unclear. We therefore sought to further clarify the role NKG2D plays in autoimmune diabetes development. -
Toll and Toll-Like Receptor Signalling in Development Niki Anthoney*, Istvan Foldi‡ and Alicia Hidalgo§
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Repository of the Academy's Library © 2018. Published by The Company of Biologists Ltd | Development (2018) 145, dev156018. doi:10.1242/dev.156018 DEVELOPMENT AT A GLANCE Toll and Toll-like receptor signalling in development Niki Anthoney*, Istvan Foldi‡ and Alicia Hidalgo§ ABSTRACT signalling and discuss how this signalling pathway regulates various The membrane receptor Toll and the related Toll-like receptors aspects of development across species. (TLRs) are best known for their universal function in innate immunity. KEY WORDS: Toll, Tol-1, TLR, TIR-NBS-LRR, Sarm, MyD88, NF-κB, However, Toll/TLRs were initially discovered in a developmental Dorsal, Wek, JNK, FoxO, Cell death, Cell survival, Cell fate, context, and recent studies have revealed that Toll/TLRs carry out Cell proliferation, Structural plasticity, Signalling previously unanticipated functions in development, regulating cell fate, cell number, neural circuit connectivity and synaptogenesis. Introduction Furthermore, knowledge of their molecular mechanisms of action is The Drosophila gene Toll is possibly the only gene associated with expanding and has highlighted that Toll/TLRs function beyond the two Nobel Prizes: it was discovered as one of the key genes canonical NF-κB pathway to regulate cell-to-cell communication and determining body plan, and was later rediscovered for its role in signalling at the synapse. Here, we provide an overview of Toll/TLR underlying innate immunity (leading to the 1995 and 2011 Nobel Prizes in Physiology or Medicine, respectively). Searches for Toll NeuroDevelopment Group, School of Biosciences, University of Birmingham, homologues led to the identification of Toll-like receptor (TLR) Birmingham B15 2TT, UK. -
Binding Mode of the Side-By-Side Two-Igv Molecule CD226/DNAM-1 to Its Ligand CD155/Necl-5
Binding mode of the side-by-side two-IgV molecule CD226/DNAM-1 to its ligand CD155/Necl-5 Han Wanga, Jianxun Qib, Shuijun Zhangb,1, Yan Lib, Shuguang Tanb,2, and George F. Gaoa,b,2 aResearch Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences (CAS), 100101 Beijing, China; and bCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, China Edited by K. Christopher Garcia, Stanford University School of Medicine, Stanford, CA, and approved December 3, 2018 (received for review September 11, 2018) Natural killer (NK) cells are important component of innate immu- CD226, also known as DNAM-1, belongs to the Ig superfamily nity and also contribute to activating and reshaping the adaptive and contains two extracellular Ig-like domains (CD226-D1 and immune responses. The functions of NK cells are modulated by CD226-D2), and is widely expressed in monocytes, platelets, multiple inhibitory and stimulatory receptors. Among these recep- T cells, and most of the resting NK cells (8, 13, 19, 20). The tors, the activating receptor CD226 (DNAM-1) mediates NK cell intracellular domain of CD226 does not contain a tyrosine-based activation via binding to its nectin-like (Necl) family ligand, CD155 activation motif, which is accepted as responsible for activating (Necl-5). Here, we present a unique side-by-side arrangement signal transduction of stimulatory molecules (13). Instead, it pattern of two tandem immunoglobulin V-set (IgV) domains transmits the downstream signaling by phosphorylation of in- deriving from the ectodomains of both human CD226 (hCD226- tracellular phosphorylation sites and subsequent association with ecto) and mouse CD226 (mCD226-ecto), which is substantially integrin lymphocyte function-associated antigen 1 (21). -
Activating Natural Killer Cell Receptors: KIR Recognition of a Cancer-Associated Ligand
Activating natural killer cell receptors: KIR recognition of a cancer-associated ligand Lavanya Thiruchelvam-Kyle PhD Thesis Institute of Basic Medical Sciences Department of Molecular Medicine Division of Anatomy University of Oslo 2018 © Lavanya Thiruchelvam-Kyle, 2018 Series of dissertations submitted to the Faculty of Medicine, University of Oslo ISBN 978-82-8377-245-6 All rights reserved. No part of this publication may be reproduced or transmitted, in any form or by any means, without permission. Cover: Hanne Baadsgaard Utigard. Print production: Reprosentralen, University of Oslo. ACKNOWLEDGMENTS ........................................................................................................................................... 4 ABBREVIATIONS ...................................................................................................................................................... 6 PAPERS INCLUDED .................................................................................................................................................. 9 INTRODUCTION ...................................................................................................................................................... 10 The never ending host pathogen arms race ......................................................................................................... 11 The innate immune system ................................................................................................................................... 12 -
Blood Flow Guides Sequential Support of Neutrophil Arrest and Diapedesis
RESEARCH ARTICLE Blood flow guides sequential support of neutrophil arrest and diapedesis by PILR-b 1 and PILR-a Yu-Tung Li, Debashree Goswami†, Melissa Follmer, Annette Artz, Mariana Pacheco-Blanco, Dietmar Vestweber* Vascular Cell Biology, Max Planck Institute of Molecular Biomedicine, Mu¨ nster, Germany Abstract Arrest of rapidly flowing neutrophils in venules relies on capturing through selectins and chemokine-induced integrin activation. Despite a long-established concept, we show here that gene inactivation of activating paired immunoglobulin-like receptor (PILR)-b1 nearly halved the efficiency of neutrophil arrest in venules of the mouse cremaster muscle. We found that this receptor binds to CD99, an interaction which relies on flow-induced shear forces and boosts chemokine-induced b2-integrin-activation, leading to neutrophil attachment to endothelium. Upon arrest, binding of PILR-b1 to CD99 ceases, shifting the signaling balance towards inhibitory PILR-a. This enables integrin deactivation and supports cell migration. Thus, flow-driven shear forces guide sequential signaling of first activating PILR-b1 followed by inhibitory PILR-a to prompt neutrophil arrest and then transmigration. This doubles the efficiency of selectin-chemokine driven neutrophil arrest by PILR-b1 and then supports transition to migration by PILR-a. DOI: https://doi.org/10.7554/eLife.47642.001 *For correspondence: [email protected] Present address: †Center for Global Infectious Disease Introduction Research, Seattle Childrens Host defense against pathogens depends on the recruitment of leukocytes to sites of infections Research Institute, Seattle, (Ley et al., 2007). Selectins capture leukocytes to the endothelial cell surface by binding to glyco- United States conjugates (McEver, 2015). -
The Immune System
Chapter 43 The Immune System Lecture Outline Overview: Reconnaissance, Recognition, and Response • An animal must defend itself against pathogens, infectious agents that cause disease. o Viruses, bacteria, protists, and fungi infect a wide range of animals, including humans. • Animals fight back in various ways. o Immune cells patrol the body fluids of animals, seeking out and destroying foreign cells. o Responses to infection include proteins that punch holes in bacterial membranes or block viruses from entering body cells. • Immune systems help animals to avoid or limit many infections. o External barriers, formed by the skin or shell, provide an obstacle to microbes. o Chemical secretions that trap or kill microbes guard the body’s entrances and exits. o The internal defenses include macrophages and other phagocytic cells that ingest and destroy pathogens. • An animal’s immune system must detect foreign particles and tissues that invade the body, distinguishing self from nonself. • To identify pathogens, animal immune systems use receptors that specifically bind molecules from foreign cells or viruses. • Two general strategies for molecular recognition form the basis for innate and acquired immunity. • Innate immunity is common to all animals. • Innate immune responses are active immediately upon infection and are the same whether or not the pathogen has been encountered previously. • Innate immunity includes the barrier defenses (for example, skin) as well as defenses that combat pathogens after they enter the body. • The activation of many of these internal defenses relies on the recognition of pathogens. o Innate immune cells produce a small, preset group of receptor proteins that accomplish this recognition. -
Mast Cell Signaling: the Role of Protein Tyrosine Kinase Syk, Its Activation and Screening Methods for New Pathway Participants
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 584 (2010) 4933–4940 journal homepage: www.FEBSLetters.org Review Mast cell signaling: The role of protein tyrosine kinase Syk, its activation and screening methods for new pathway participants Reuben P. Siraganian *, Rodrigo O. de Castro, Emilia A. Barbu, Juan Zhang Receptors and Signal Transduction Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bldg. 49, Rm. 1A16, Bethesda, MD 20892, USA article info abstract Article history: The aggregation by antigen of the IgE bound to its high affinity receptor on mast cells initiates a Received 27 July 2010 complex series of biochemical events that result in the release of inflammatory mediators. The Accepted 3 August 2010 essential role of the protein tyrosine kinase Syk has been appreciated for some time, and newer Available online 7 August 2010 results have defined the mechanism of its activation. The use of siRNA has defined the relative con- tribution of Syk, Fyn and Gab2 to signaling and has made possible a screening study to identify pre- Edited by Israel Pecht viously unrecognized molecules that are involved in these pathways. Published by Elsevier B.V. on behalf of the Federation of European Biochemical Societies. Keywords: Mast cell FceRI signal transduction Syk Fyn Gab2 Phosphatase 1. Introduction The a-chain binds the Fc portion of IgE at ratio of 1:1 while the b- and c-chains contain ITAMs in their cytoplasmic domains. Be- The activation of mast cells or basophils initiates a series of bio- cause FceRI has no intrinsic enzymatic activity, the activation of chemical events which result in the release of biologically active non-receptor protein tyrosine kinases are essential for cell activa- mediators that cause allergic reactions. -
CD8- Double-Negative T Cells and Outcomes of Immuno-Checkpoint
cells Article Examining the Relationship between Circulating CD4− CD8− Double-Negative T Cells and Outcomes of Immuno-Checkpoint Inhibitor Therapy—Looking for Biomarkers and Therapeutic Targets in Metastatic Melanoma Sabino Strippoli 1 , Annarita Fanizzi 2 , Antonio Negri 3, Davide Quaresmini 1, Annalisa Nardone 2, Andrea Armenio 4, Angela Monica Sciacovelli 1, Raffaella Massafra 2, Ivana De Risi 1, Giacoma De Tullio 3, Anna Albano 1 and Michele Guida 1,* 1 Rare Tumors and Melanoma Unit, IRCCS Istituto Tumori Giovanni Paolo II, 70124 Bari, Italy; [email protected] (S.S.); [email protected] (D.Q.); [email protected] (A.M.S.); [email protected] (I.D.R.); [email protected] (A.A.) 2 Radiotherapy Unit, IRCCS Istituto Tumori Giovanni Paolo II, 70124 Bari, Italy; [email protected] (A.F.); [email protected] (A.N.); [email protected] (R.M.) 3 Unit of Hematology and Cell Therapy, IRCCS Istituto Tumori Giovanni Paolo II, 70124 Bari, Italy; [email protected] (A.N.); [email protected] (G.D.T.) Citation: Strippoli, S.; Fanizzi, A.; 4 Department of Plastic Surgery, IRCCS Istituto Tumori Giovanni Paolo II, 70124 Bari, Italy; Negri, A.; Quaresmini, D.; Nardone, A.; [email protected] Armenio, A.; Sciacovelli, A.M.; * Correspondence: [email protected]; Tel.: +39-08-0555-5136 Massafra, R.; De Risi, I.; De Tullio, G.; et al. Examining the Abstract: Background: The role of circulating CD4−/CD8− double-negative T cells (DNTs) in the Relationship between Circulating immune response to melanoma is poorly understood, as are the effects of checkpoint inhibitors on CD4− CD8− Double-Negative T T cell subpopulations. -
LECTURE 12 B Lymphocytes Surface Receptors and Activation
LECTURE: 12 Title: B-LYMPHOCYTES SURFACE RECEPTORS AND THEIR ACTIVATION LEARNING OBJECTIVES: The student should be able to: • Identify the percentage of B-lymphocytes in comparison to other circulating lymphoid cells. • Distinguish B-lymphocytes in regarding to their cell surface receptors. • Identify the definitive B-cell surface markers. • Determine to which type of immune receptor families this B-cell definitive marker belongs? • Identify the surface immunoglobulin isotypes (antigen-receptors). • Describe the B-cell receptor complex (BCR). • Enumerate some B-cell markers, and indicate their importance in immunity. • Explain the reason that, CD5+ B-lymphocytes are considered as a distinctive Cell subset. • Indicate which B-cell marker (s), enhance B-cell phagocytosis. • Enumerate some of the B-cell receptors which are important in B-cell- cooperations. • Explain the serological technique used to visualize the immunoglobulins in the cytoplasm of the plasma cell. • Describe the mechanism of signal transduction is performed by BCRs. LECTURE REFRENCE: 1. TEXTBOOK: ROITT, BROSTOFF, MALE IMMUNOLOGY. 6th edition. Chapter 2. pp. 29-30 2. TEXTBOOK: ABUL K. ABBAS. ANDREW H. LICHTMAN. CELLULAR AND MOLECULAR IMMUNOLOGY. 5TH EDITION. Chapter. 7 .pg 129-151. 3. TEXTBOOK: MALE, COOKE. OWEN, TROWSDALE, CHAMPION ADVANCE IMMUNOLOGY. Chapter 3. pp. 3.7. Chapter 6. pp 6.7. 1 B-LYMPHOCYTE SURFACE RECEPTORS AND B CELL ACTIVATRION INTRODUCTION B cells are characterized by their surface immunoglobulins. They represent about 5-15 % of the circulating lymphoid pool, and are classically defined by the presence of surface immunoglobulins. These immunoglobulin markers are made by the B cells themselves, and are inserted into the surface membrane where they act as specific antigen receptors. -
Quantitative Immunology for Physicists
bioRxiv preprint doi: https://doi.org/10.1101/696567; this version posted July 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Quantitative Immunology for Physicists Gr´egoireAltan-Bonnet,1, ∗ Thierry Mora,2, ∗ and Aleksandra M. Walczak2, ∗ 1Immunodynamics Section, Cancer & Inflammation Program, National Cancer Institute, Bethesda MD 20892, USA 2Laboratoire de physique de l'Ecole´ normale sup´erieure (PSL University), CNRS, Sorbonne Universit´e,Universit´ede Paris, 75005 Paris, France Abstract. The adaptive immune system is a dynamical, self-organized multiscale system that protects vertebrates from both pathogens and internal irregularities, such as tumours. For these reason it fascinates physicists, yet the multitude of different cells, molecules and sub-systems is often also petrifying. Despite this complexity, as experiments on different scales of the adaptive immune system become more quantitative, many physicists have made both theoretical and experimental contributions that help predict the behaviour of ensembles of cells and molecules that participate in an immune response. Here we review some recent contributions with an emphasis on quantitative questions and methodologies. We also provide a more general methods section that presents some of the wide array of theoretical tools used in the field. CONTENTS A. Cytokine signaling and the JAK-STAT pathway 14 I. Introduction 2 1. Cytokine binding and signaling at equilibrium 15 II. Physical chemistry of ligand-receptor 2. Tunability of cytokine responses. 15 interaction: specificity, sensitivity, kinetics. 4 3. Regulation by cytokine consumption 17 A. Diffusion-limited reaction rates 4 4.