Nematode Community Structure in Relation to Metals in the Southern of Caspian
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Responses of an Abyssal Meiobenthic Community to Short-Term Burial With
Responses of an abyssal meiobenthic community to short-term burial with crushed nodule particles in the South-East Pacific Lisa Mevenkamp, Katja Guilini, Antje Boetius, Johan De Grave, Brecht Laforce, Dimitri Vandenberghe, Laszlo Vincze, Ann Vanreusel 5 Supplementary Material Figure S1 A) Front view on the sediment-dispensing device, sediment is filled in tubes inside the round plexiglass space B) Top view 10 in open position, tubes are visible as big holes and C) Top view in closed position. Holes in the plexiglass cover ensured escape of all air in the device. 1 Figure S2 Pictures of push cores taken at the end of the experiment from the Control treatment (A) and the Burial treatment (B and C). Through its black colour, the layer of crushed nodule debris is easily distinguishable from the underlying sediment. 5 Figure S3 Example of the crushed nodule substrate. Scale in centimetres. 2 Figure S4 MDS plot of the relative nematode genus composition in each sample of the Control and Burial treatment (BT) per sediment depth layer with overlying contours of significant (SIMPROF test) clusters at a 40 % similarity level. NOD = crushed nodule layer 5 3 Table S1 Mean densities (ind. 10 cm-2, ± standard error)and feeding type group of nematode genera found in both treatments of the experiment combining all depth layers. Feeding Order Family Genus type Control Burial treatment Araeolaimida Axonolaimidae Ascolaimus 1B 0.17 ± 0.17 Comesomatidae Cervonema 1B 3.57 ± 0.81 2.59 ± 0.90 Minolaimus 1A 0.43 ± 0.43 0.29 ± 0.29 Pierrickia 1B 0.42 ± 0.21 0.94 -
Free-Living Marine Nematodes from San Antonio Bay (Río Negro, Argentina)
A peer-reviewed open-access journal ZooKeys 574: 43–55Free-living (2016) marine nematodes from San Antonio Bay (Río Negro, Argentina) 43 doi: 10.3897/zookeys.574.7222 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina) Gabriela Villares1, Virginia Lo Russo1, Catalina Pastor de Ward1, Viviana Milano2, Lidia Miyashiro3, Renato Mazzanti3 1 Laboratorio de Meiobentos LAMEIMA-CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina 2 Universidad Nacional de la Patagonia San Juan Bosco, sede Puerto Madryn. Boulevard Brown 3051, U9120ACF, Puerto Madryn, Argentina 3Centro de Cómputos CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina Corresponding author: Gabriela Villares ([email protected]) Academic editor: H-P Fagerholm | Received 18 November 2015 | Accepted 11 February 2016 | Published 28 March 2016 http://zoobank.org/3E8B6DD5-51FA-499D-AA94-6D426D5B1913 Citation: Villares G, Lo Russo V, Pastor de Ward C, Milano V, Miyashiro L, Mazzanti R (2016) Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina). ZooKeys 574: 43–55. doi: 10.3897/zookeys.574.7222 Abstract The dataset of free-living marine nematodes of San Antonio Bay is based on sediment samples collected in February 2009 during doctoral theses funded by CONICET grants. A total of 36 samples has been taken at three locations in the San Antonio Bay, Santa Cruz Province, Argentina on the coastal littoral at three tidal levels. This presents a unique and important collection for benthic biodiversity assessment of Patagonian nematodes as this area remains one of the least known regions. -
Ahead of Print Online Version Phylogenetic Relationships of Some
Ahead of print online version FOLIA PARASITOLOGICA 58[2]: 135–148, 2011 © Institute of Parasitology, Biology Centre ASCR ISSN 0015-5683 (print), ISSN 1803-6465 (online) http://www.paru.cas.cz/folia/ Phylogenetic relationships of some spirurine nematodes (Nematoda: Chromadorea: Rhabditida: Spirurina) parasitic in fishes inferred from SSU rRNA gene sequences Eva Černotíková1,2, Aleš Horák1 and František Moravec1 1 Institute of Parasitology, Biology Centre of the Academy of Sciences of the Czech Republic, Branišovská 31, 370 05 České Budějovice, Czech Republic; 2 Faculty of Science, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic Abstract: Small subunit rRNA sequences were obtained from 38 representatives mainly of the nematode orders Spirurida (Camalla- nidae, Cystidicolidae, Daniconematidae, Philometridae, Physalopteridae, Rhabdochonidae, Skrjabillanidae) and, in part, Ascaridida (Anisakidae, Cucullanidae, Quimperiidae). The examined nematodes are predominantly parasites of fishes. Their analyses provided well-supported trees allowing the study of phylogenetic relationships among some spirurine nematodes. The present results support the placement of Cucullanidae at the base of the suborder Spirurina and, based on the position of the genus Philonema (subfamily Philoneminae) forming a sister group to Skrjabillanidae (thus Philoneminae should be elevated to Philonemidae), the paraphyly of the Philometridae. Comparison of a large number of sequences of representatives of the latter family supports the paraphyly of the genera Philometra, Philometroides and Dentiphilometra. The validity of the newly included genera Afrophilometra and Carangi- nema is not supported. These results indicate geographical isolation has not been the cause of speciation in this parasite group and no coevolution with fish hosts is apparent. On the contrary, the group of South-American species ofAlinema , Nilonema and Rumai is placed in an independent branch, thus markedly separated from other family members. -
From Kermadec Trench, Southwest Pacific
European Journal of Taxonomy 158: 1–19 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2015.158 www.europeanjournaloftaxonomy.eu 2015 · Leduc D. This work is licensed under a Creative Commons Attribution 3.0 License. Research article urn:lsid:zoobank.org:pub:16E64AF8-518C-47F0-B3CF-6BA707C222FA New species of Thelonema, Metasphaerolaimus, and Monhystrella (Nematoda, Monhysterida) from Kermadec Trench, Southwest Pacific Daniel LEDUC National Institute of Water and Atmospheric Research, Private Bag 14-901, Wellington, New Zealand; +64 4 386 0379. Email: [email protected] urn:lsid:zoobank.org:author:9393949F-3426-4EE2-8BDE-DEFFACE3D9BC Abstract. Three new species of the order Monhysterida are described based on specimens obtained at depths of 8081 and 9177 m in the Kermadec Trench. Thelonema clarki sp. nov. is characterised by a large body size (3230–4461 µm), short cylindrical buccal cavity, gubernaculum without apophyses, and long conico-cylindrical tail. This is the first record of the genus since its original description over two decades ago from the Peru Basin. Metasphaerolaimus constrictus sp. nov. is characterised by a relatively long body (1232–1623 µm), slightly arcuate spicules without gubernaculum, and conico-cylindrical tail with inner cuticle conspicuously thickened immediately anterior to cylindrical portion. Monhystrella kermadecensis sp. nov. is characterised by a circle of papillose outer labial sensillae slightly anterior to the four short cephalic setae, gubernaculum with caudal apophyses, the presence of distinct cuticularised piece along anterior vaginal wall, and a relatively short conical (males) or conico-cylindrical tail (females) with conical, ventrally-curved spinneret. M. kermadecensis sp. nov. can be differentiated from all other species of the genus, and, indeed, the entire family, based on the variable position of the anterior gonad relative to the intestine. -
(Stsm) Scientific Report
SHORT TERM SCIENTIFIC MISSION (STSM) SCIENTIFIC REPORT This report is submitted for approval by the STSM applicant to the STSM coordinator Action number: CA15219-45333 STSM title: Free-living marine nematodes from the eastern Mediterranean deep sea - connecting COI and 18S rRNA barcodes to structure and function STSM start and end date: 06/02/2020 to 18/3/2020 (short than the planned two months due to the Co-Vid 19 virus pandemic) Grantee name: Zoya Garbuzov PURPOSE OF THE STSM: My Ph.D. thesis is devoted to the population ecology of free-living nematodes inhabiting deep-sea soft substrates of the Mediterranean Levantine Basin. The success of the study largely depends on my ability to accurately identify collected nematodes at the species level, essential for appropriate environmental analysis. Morphological identification of nematodes at the species level is fraught with difficulties, mainly because of their relatively simple body shape and the absence of distinctive morphological characters. Therefore, a combination of morphological identification to genus level and the use of molecular markers to reach species identification is assumed to provide a better distinction of species in this difficult to identify group. My STSM host, Dr. Nikolaos Lampadariou, is an experienced taxonomist and nematode ecologist. In addition, I will have access to the molecular laboratory of Dr. Panagiotis Kasapidis. Both researchers are based at the Hellenic Center for Marine Research (HCMR) in Crete and this STSM is aimed at combining morphological taxonomy, under the supervision of Dr. Lampadariou, with my recently acquired experience in nematode molecular taxonomy for relating molecular identifiers to nematode morphology. -
Free-Living Marine Nematodes Diversity at Ponta Delgada-São Miguel (Azores Archipelago
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.09.289918; this version posted September 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Free-living marine nematodes diversity at Ponta Delgada-São Miguel (Azores archipelago, North-East Atlantic Ocean): first results from shallow soft-bottom habitats Alberto de Jesús Navarrete1*, Víctor Aramayo2,3, Anitha Mary Davidson4. Ana Cristina Costa5 1 Systematic and Aquatic Ecology Department, El Colegio de la Frontera Sur, Unidad Chetumal, México. Av. Centenario km 5.5, Chetumal Quintana Roo, México. 2 Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, P.O. BOX 1898, Lima 100, Peru. 3 Dirección de Oceanografía y Cambio Climático. Instituto del Mar del Perú, P.O. BOX 22, Callao, Peru. 4 School of Ocean Studies and Technology, Kerala University of Fisheries and Ocean Studies, Panangad PO Kochi 682506, Kerala India. Present address: CSIR-National Institute of Oceanography, Regional Centre, Kochi-682018, Kerala India. 5 Faculdade de Ciências e Tecnologia e CIBIO/InBio – Centro de Investigação em Biodiverdade e Recursos Genéticos, Universidade dos Açores * Corresponding author: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.09.09.289918; this version posted September 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Taxonomy Assignment Approach Determines the Efficiency of Identification of Metabarcodes in Marine Nematodes
Taxonomy assignment approach determines the efficiency of identification of metabarcodes in marine nematodes Oleksandr Holovachov1, Quiterie Haenel2, Sarah J. Bourlat3 and Ulf Jondelius1 1Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden 2Zoological Institute, University of Basel, Switzerland 3Department of Marine Sciences, University of Gothenburg, Sweden Abstract: Precision and reliability of barcode-based biodiversity assessment can be affected at several steps during acquisition and analysis of the data. Identification of barcodes is one of the crucial steps in the process and can be accomplished using several different approaches, namely, alignment-based, probabilistic, tree-based and phylogeny-based. Number of identified sequences in the reference databases affects the precision of identification. This paper compares the identification of marine nematode barcodes using alignment-based, tree-based and phylogeny-based approaches. Because the nematode reference dataset is limited in its taxonomic scope, barcodes can only be assigned to higher taxonomic categories, families. Phylogeny-based approach using Evolutionary Placement Algorithm provided the largest number of positively assigned metabarcodes and was least affected by erroneous sequences and limitations of reference data, comparing to alignment- based and tree-based approaches. Key words: biodiversity, identification, barcode, nematodes, meiobenthos. 1 1. Introduction Metabarcoding studies based on high throughput sequencing of amplicons from marine samples have reshaped our understanding of the biodiversity of marine microscopic eukaryotes, revealing a much higher diversity than previously known [1]. Early metabarcoding of the slightly larger sediment-dwelling meiofauna have mainly focused on scoring relative diversity of taxonomic groups [1-3]. The next step in metabarcoding: identification of species, is limited by the available reference database, which is sparse for most marine taxa, and by the matching algorithms. -
Nematoda, Monhysterida
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: European Journal of Taxonomy Jahr/Year: 2015 Band/Volume: 0158 Autor(en)/Author(s): Leduc Daniel Artikel/Article: New species of Thelonema, Metasphaerolaimus, and Monhystrella (Nematoda, Monhysterida) from Kermadec Trench, Southwest Pacific 1-19 European Journal of Taxonomy 158: 1–19 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2015.158 www.europeanjournaloftaxonomy.eu 2015 · Leduc D. This work is licensed under a Creative Commons Attribution 3.0 License. Research article urn:lsid:zoobank.org:pub:16E64AF8-518C-47F0-B3CF-6BA707C222FA New species of Thelonema, Metasphaerolaimus, and Monhystrella (Nematoda, Monhysterida) from Kermadec Trench, Southwest Pacifi c Daniel LEDUC National Institute of Water and Atmospheric Research, Private Bag 14-901, Wellington, New Zealand; +64 4 386 0379. Email: [email protected] urn:lsid:zoobank.org:author:9393949F-3426-4EE2-8BDE-DEFFACE3D9BC Abstract. Three new species of the order Monhysterida are described based on specimens obtained at depths of 8081 and 9177 m in the Kermadec Trench. Thelonema clarki sp. nov. is characterised by a large body size (3230–4461 μm), short cylindrical buccal cavity, gubernaculum without apophyses, and long conico-cylindrical tail. This is the fi rst record of the genus since its original description over two decades ago from the Peru Basin. Metasphaerolaimus constrictus sp. nov. is characterised by a relatively long body (1232–1623 -
Position of Pharyngeal Gland Outlets in Monhysteridae (Nemata)
Journal of Nematology 28(2): 169-176. 1996. © The Society of Nematologists 1996. Position of Pharyngeal Gland Outlets in Monhysteridae (Nemata) A. COOMANS, I A. EYUALEM, 1'2 AND M. C. VAN DE VELDE 1 Abstract: In this study an attempt was made to determine the position of the outlets and nuclei of the pharyngeal glands in four monhysterid genera. Five Eumonhystera spp., seven Monhystera spp., and eight Monhystrella spp. were studied under the light microscope. Longitudinal sections of an undescribed Monhystera sp. and cross sections of Geomonhystera ckisjuncta were also studied under the scanning and transmission electron microscope, respectively. The results of the light microscopic studies were inconclusive about the position of the outlets but showed a number of nuclei in the basal part of the pharynx. The scanning and transmission electron microscopic studies revealed five pharyngeal glands and their outlets; their position was as follows: dorsal gland outlet at the base of buccal tooth, first pair of ventrosublateral gland outlets halfway along the pharynx, and second pair of ventrosublateral gland outlets close to the base of the pharynx. It is concluded that at least three, and possibly five, nuclei are in the basal part of the pharynx. This pattern, in the position of the outlets and nuclei, is similar to that in Caenorhabditi6 elegans (Maupas, 1900) Dougherty, 1953 and may well be the basic plan in the Class Chromadorea (including Secernentia as a subclass). Key words: Geomonhystera, Monhystera, Monhysterida, morphology, nematode systematics, pharyn- geal gland outlet, pharynx, scanning electron microscopy, transmission electron microscopy, ultra- structure. The number, shape, and position of near the base of the stoma; the ventrosub- pharyngeal glands, and especially the po- lateral (="subventral") glands never open sition of their nuclei and outlets, are im- at the anterior end of the pharynx. -
A Morphometric Analysis of the Genus Terschellingia (Nematoda: Linhomoeidae) with Redefinition of the Genus and Key to the Species M
Journal of the Marine Biological Association of the United Kingdom, page 1 of 11. #2009 Marine Biological Association of the United Kingdom doi:10.1017/S0025315409000381 Printed in the United Kingdom REVIEW A morphometric analysis of the genus Terschellingia (Nematoda: Linhomoeidae) with redefinition of the genus and key to the species m. armenteros1,2, a. ruiz-abierno1, m. vincx2 and w. decraemer3,4 1Centro de Investigaciones Marinas, Universidad de La Habana, 16 # 114, CP 11300, Playa, Ciudad Habana, Cuba, 2Marine Biology Section, Ghent University, Krijgslaan 281 S8, 9000 Ghent, Belgium, 3Department of Invertebrates, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium, 4Nematology Section, Ghent University, Ledeganckstraat 35, 9000 Ghent, Belgium The cosmopolitan and often ecologically dominant genus Terschellingia (Nematoda: Linhomoeidae), with 38 nominal species, is taxonomically a problematic taxon. Its species show high morphological plasticity, possess few diagnostic characters and identification keys are lacking. A revision of the genus was carried out based on morphological and morphometric data from the literature and from observations of specimens collected in Cienfuegos Bay, Caribbean Sea, Cuba. The diagnosis of the genus Terschellingia is emended. Of the current 38 nominal species, 15 are considered as valid species based on morphological characters related to size and position of amphidial fovea, presence/position of cephalic and cervical setae, presence/size/shape of pharyngeal bulb, shape of spicular apparatus and shape of tail. Tabular and pictorial keys were provided based on these characters. Three sympatric species: T. communis, T. gourbaultae and T. longicaudata were redescribed based on recently collected Cuban specimens. Each of them showed relatively large differences in body size in comparison with the respective type specimens, suggesting possible variation due to local environmental differences. -
Monhysterida: Xyalidae): a Marine Nematode from the Indian Coast with an Illustrated Guide and Modified Key for Species of Rhynchonema Cobb, 1920
Zootaxa 3905 (3): 365–380 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3905.3.3 http://zoobank.org/urn:lsid:zoobank.org:pub:7564C962-B1E5-4BAE-B837-58BFB28BF6CF Rhynchonema dighaensis sp. nov. (Monhysterida: Xyalidae): a marine nematode from the Indian coast with an illustrated guide and modified key for species of Rhynchonema Cobb, 1920 TRIDIP KUMAR DATTA1, ALBERTO DE JESUS NAVARRETE2 & ANIL MOHAPATRA1,3 1Marine Aquarium and Regional Centre, Zoological Survey of India, Digha, West Bengal, India 2Department of Systematics and Aquatic Ecology, ECOSUR, Mexico 3Corresponding author. E-mail: [email protected] Abstract A small bodied, free-living marine nematode, Rhynchonema dighaensis sp. nov., is described from the intertidal sand of the east coast of India. It is characterized by having a small buccal cavity, longer left spicule and symmetrical dorsal gu- bernaculum apophysis. Other species of the genus are discussed with their type locality. A modified key has been prepared for species of Rhynchonema with an illustrated guide. Species of Rhynchonema primarily differ from each other by the shape and size of the spicules, shape of the gubernaculum and dorsal apophysis, size of the buccal cavity and position of the amphid. Key words: Free-living marine Nematode, India, dichotomous key, taxonomy, morphology Introduction Members of Rhynchonema have a distinctly tapered, beak-like anterior end. The genus was erected by Cobb in 1920. Nicholas & Trueman (2002) further confirmed Rhynchonema under the family Xyalidae. Rhynchonema differs from the morphologically similar Prorhynchonema Gourbault, 1982 in having a buccal cavity more than 15 µm long, in the position of the amphid with respect to the buccal cavity and the oesophagus.In Prorhynchonema the amphid is not situated at the level of the buccal cavity but at that of the oesophagus, 29 µm from the anterior end. -
Irish Biodiversity: a Taxonomic Inventory of Fauna
Irish Biodiversity: a taxonomic inventory of fauna Irish Wildlife Manual No. 38 Irish Biodiversity: a taxonomic inventory of fauna S. E. Ferriss, K. G. Smith, and T. P. Inskipp (editors) Citations: Ferriss, S. E., Smith K. G., & Inskipp T. P. (eds.) Irish Biodiversity: a taxonomic inventory of fauna. Irish Wildlife Manuals, No. 38. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland. Section author (2009) Section title . In: Ferriss, S. E., Smith K. G., & Inskipp T. P. (eds.) Irish Biodiversity: a taxonomic inventory of fauna. Irish Wildlife Manuals, No. 38. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland. Cover photos: © Kevin G. Smith and Sarah E. Ferriss Irish Wildlife Manuals Series Editors: N. Kingston and F. Marnell © National Parks and Wildlife Service 2009 ISSN 1393 - 6670 Inventory of Irish fauna ____________________ TABLE OF CONTENTS Executive Summary.............................................................................................................................................1 Acknowledgements.............................................................................................................................................2 Introduction ..........................................................................................................................................................3 Methodology........................................................................................................................................................................3