Sorcs2 Controls Functional Expression of Amino Acid Transporter EAAT3 to Protect Neurons from Oxidative Stress and Epilepsy-Induced Pathology
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The Effects of P75 and Sorcs2 on Neuronal Function and Structure
The Effects of Zn2+ on the Binding of the BDNF Prodomain with SorCS2 on Neuronal Function and Structure: Implications for Learning and Memory Caroline Pennacchio Briarcliff High School http://www.newscientist.com/data/images/ns/cms/teaser/blog/201211/f0049969_lead.jpg Introduction • Neurons -> Brain • Hippocampus = Control Center • Neural connections -> Brain-Derived Neurotrophic Factor (BDNF) Introduction Review of Literature Research Questions/Hypotheses Methods Bibliography Ligands • Regulate cell proliferation, differentiation • Axon and dendrite growth, synaptogenesis, and synaptic function and plasticity (Reichardt, 2006, Lu, B, Pang, PT, Woo. N.H., 2005, Minichiello L, 2009) http://www.mdpi.com/ijms/ijms-13-13713/article_deploy/html/images/ijms-13-13713f1-1024.png Introduction Review of Literature Research Questions/Hypotheses Methods Bibliography Pro-Neurotrophins • Proteolytically cleaved in trans-Golgi by furin or in secretory granules by pro-protein contervases ] • Extracellular cleavages created in mature domain formation show how to control synaptic functions of neurotrophins (Lu, 2003) • proBDNF regulates hippocampal structure, synaptic transmission, and plasticity (Yang et al., 2014) https://www.researchgate.net/profile/Jay_Pundavela/publication/269520194/figure/fig1/Fig-1-Binding-of-neurotrophins- • Induce apoptotic signaling (Nykjaer et al. 2004; Teng et al. 2005; Jansen et al. and-proneurotrophins-to-Trk-receptors-and-p75NTR-NGF_small.png 2007; Willnow et al. 2008; Yano et al. 2009) Introduction Review of Literature -
Sorcs2 Deletion Leads to Altered Neuronal Lysosome Activity
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.08.439000; this version posted April 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 SorCS2 deletion leads to altered neuronal lysosome activity 2 3 Sérgio Almeida1*, André M. Miranda2, Andrea E. Tóth1, Morten S. Nielsen1 and Tiago Gil Oliveira2 4 1 Department of Biomedicine, Aarhus University, Aarhus, Denmark 5 2 Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Braga, Portugal 6 *Corresponding author: Sérgio Almeida, Department of Biomedicine, Aarhus University, Høegh- 7 Guldbergsgade 10, DK-8000C Aarhus, Denmark. Phone: +45 60511406. E-mail: [email protected] 8 9 10 11 12 13 Abstract 14 Vps10p domain receptors are important for regulating intracellular protein sorting within the central 15 nervous system and as such constitute risk factors for different brain pathologies. Here, we show that 16 removal of SorCS2 leads to altered lysosomal activity in mouse primary neurons. SorCS2-/- neurons show 17 elevated lysosomal markers such as LAMP1 and acidic hydrolases including cathepsin B and D. Despite 18 increased levels, SorCS2-/- neurons fail to degrade cathepsin specific substrates in a live context. SorCS2- 19 deficient mice present an increase in lysolipids, which may contribute to membrane permeabilization and 20 increased susceptibility to lysosomal stress. Our findings highlight SorCS2 as an important factor for a 21 balanced neuronal lysosome milieu. -
1 Supporting Information for a Microrna Network Regulates
Supporting Information for A microRNA Network Regulates Expression and Biosynthesis of CFTR and CFTR-ΔF508 Shyam Ramachandrana,b, Philip H. Karpc, Peng Jiangc, Lynda S. Ostedgaardc, Amy E. Walza, John T. Fishere, Shaf Keshavjeeh, Kim A. Lennoxi, Ashley M. Jacobii, Scott D. Rosei, Mark A. Behlkei, Michael J. Welshb,c,d,g, Yi Xingb,c,f, Paul B. McCray Jr.a,b,c Author Affiliations: Department of Pediatricsa, Interdisciplinary Program in Geneticsb, Departments of Internal Medicinec, Molecular Physiology and Biophysicsd, Anatomy and Cell Biologye, Biomedical Engineeringf, Howard Hughes Medical Instituteg, Carver College of Medicine, University of Iowa, Iowa City, IA-52242 Division of Thoracic Surgeryh, Toronto General Hospital, University Health Network, University of Toronto, Toronto, Canada-M5G 2C4 Integrated DNA Technologiesi, Coralville, IA-52241 To whom correspondence should be addressed: Email: [email protected] (M.J.W.); yi- [email protected] (Y.X.); Email: [email protected] (P.B.M.) This PDF file includes: Materials and Methods References Fig. S1. miR-138 regulates SIN3A in a dose-dependent and site-specific manner. Fig. S2. miR-138 regulates endogenous SIN3A protein expression. Fig. S3. miR-138 regulates endogenous CFTR protein expression in Calu-3 cells. Fig. S4. miR-138 regulates endogenous CFTR protein expression in primary human airway epithelia. Fig. S5. miR-138 regulates CFTR expression in HeLa cells. Fig. S6. miR-138 regulates CFTR expression in HEK293T cells. Fig. S7. HeLa cells exhibit CFTR channel activity. Fig. S8. miR-138 improves CFTR processing. Fig. S9. miR-138 improves CFTR-ΔF508 processing. Fig. S10. SIN3A inhibition yields partial rescue of Cl- transport in CF epithelia. -
Recent Efforts to Dissect the Genetic Basis of Alcohol Use and Abuse
Title: Recent efforts to dissect the genetic basis of alcohol use and abuse Authors: Sandra Sanchez-Roige, PhD1, Abraham A. Palmer, PhD1,2, Toni-Kim Clarke, PhD3 Affiliations: 1 Department of Psychiatry, University of California San Diego, La Jolla, CA, 92093, USA, 2 Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, 92093, USA, 3 Division of Psychiatry, University of Edinburgh, Edinburgh, UK Correspondence: Sandra Sanchez-Roige, Ph.D. Department of Psychiatry, University of California San Diego, La Jolla, CA, 92093, USA. E-mail: [email protected] Short Title: Alcohol genetics Keywords: alcoholism; alcohol consumption; AUDIT; alcohol-metabolizing genes; Genome- wide association studies; Genetics Word count: 3,981 1 Abstract (202 words) Alcohol use disorders (AUD) are defined by several symptom criteria, which can be further dissected at the genetic level. Over the past several years, our understanding of the genetic factors influencing alcohol use and abuse has progressed tremendously; hundreds of loci have now been implicated in different aspects of alcohol use. Previously known associations with alcohol metabolizing enzymes (ADH1B, ALDH2) have been definitively replicated. Additionally, novel associations with loci containing the genes KLB, GCKR, CRHR1 and CADM2 have been reported. Downstream analyses have leveraged these genetic findings to reveal important relationships between alcohol use behaviors and both physical and mental health. AUD and aspects of alcohol misuse have been shown to overlap strongly with psychiatric disorders, whereas aspects of alcohol consumption have shown stronger links to metabolism. These results demonstrate that the genetic architecture of alcohol consumption only partially overlaps with the genetics of clinically defined AUD. -
Mood Stabilizers in Psychiatric Disorders and Mechanisms Learnt from in Vitro Model Systems
International Journal of Molecular Sciences Review Mood Stabilizers in Psychiatric Disorders and Mechanisms Learnt from In Vitro Model Systems Ritu Nayak, Idan Rosh, Irina Kustanovich and Shani Stern * Sagol Department of Neurobiology, University of Haifa, Haifa 3498838, Israel; [email protected] (R.N.); [email protected] (I.R.); [email protected] (I.K.) * Correspondence: [email protected] Abstract: Bipolar disorder (BD) and schizophrenia are psychiatric disorders that manifest unusual mental, behavioral, and emotional patterns leading to suffering and disability. These disorders span heterogeneous conditions with variable heredity and elusive pathophysiology. Mood stabilizers such as lithium and valproic acid (VPA) have been shown to be effective in BD and, to some extent in schizophrenia. This review highlights the efficacy of lithium and VPA treatment in several randomized, controlled human trials conducted in patients suffering from BD and schizophrenia. Furthermore, we also address the importance of using induced pluripotent stem cells (iPSCs) as a disease model for mirroring the disease’s phenotypes. In BD, iPSC-derived neurons enabled finding an endophenotype of hyperexcitability with increased hyperpolarizations. Some of the disease phenotypes were significantly alleviated by lithium treatment. VPA studies have also reported rescuing the Wnt/β-catenin pathway and reducing activity. Another significant contribution of iPSC models can be attributed to studying the molecular etiologies of schizophrenia such as abnormal differentiation of patient-derived neural stem cells, decreased neuronal connectivity and neurite Citation: Nayak, R.; Rosh, I.; number, impaired synaptic function, and altered gene expression patterns. Overall, despite significant Kustanovich, I.; Stern, S. Mood advances using these novel models, much more work remains to fully understand the mechanisms Stabilizers in Psychiatric Disorders by which these disorders affect the patients’ brains. -
14Th Annual OAK Meeting Aarhus 29 May 2015
14th Annual OAK Meeting Danish Brain Research Laboratories Meeting Aarhus 29 May 2015 Aarhus University Merete Barker Auditorium www.cfin.au.dk/OAK-2015 14th Annual OAK Meeting Danish Brain Research Laboratories Meeting PROGRAM Friday 29 May 2015 10:00 Arrival & registration at Merete Barker Auditorium, Aarhus University 10:15-10:30 Welcome by Arne Møller Session 1: In-vivo Neuroimaging (Chair: Anne M. Landau & Kim Ryun Drasbek) 10:30-10:45 Ali Khalidan Vibholm: Preclinical in-vivo imaging of activated NMDA receptor ion channels with the novel radioligand [18F]-GE179 10:45-11:00 Athanasios Metaxas: PET imaging of the NMDA receptor using [18F]PK209 11:00-11:15 Andreas N. Glud: Parkinson’s disease models of abnormal protein aggregation in the Göttingen minipig CNS 11:15-11:30 Jenny-Ann Phan: Alpha synuclein model of Parkinson’s disease displays early synaptic disruption 11:30-11:45 Janne Vejlby: Endocannabinoid modulation of noradrenaline release 11:45-12:00 Majken Borup Thomsen: Increased receptor density of α2 adrenoceptors and GABAA α5 receptors in limbic brain regions in the domoic acid rat model of epilepsy 12.00-13.00 LUNCH BREAK Session 2: Animal models (Chair: Flemming Fryd Johansen) 13:00-13:15 Charlotte Havelund Nykjær: Stereological estimation of the brain white matter in Multiple System Atrophy 13:15-13:30 Jonas Folke: Deregulation of Wnt pathway in the prefrontal cortex from Alzheimer’s disease brains 13:30-13:45 Anders Malmendal: Insights into Alzheimer’s disease from NMR metabolomics of Aβ-expressing Drosophila 13:45-14:00 -
Independent and Epistatic Effects of Variants in VPS10-D Receptors on Alzheimer Disease Risk and Processing of the Amyloid Precursor Protein (APP)
Citation: Transl Psychiatry (2013) 3, e256; doi:10.1038/tp.2013.13 & 2013 Macmillan Publishers Limited All rights reserved 2158-3188/13 www.nature.com/tp Independent and epistatic effects of variants in VPS10-d receptors on Alzheimer disease risk and processing of the amyloid precursor protein (APP) C Reitz1,2,3, G Tosto2, B Vardarajan4, E Rogaeva5, M Ghani5, RS Rogers2, C Conrad2, JL Haines6, MA Pericak-Vance7, MD Fallin8, T Foroud9, LA Farrer4,10,11,12,13,14, GD Schellenberg15, PS George-Hyslop5,16,17, R Mayeux1,2,3,18,19,20 and the Alzheimer’s Disease Genetics Consortium (ADGC) Genetic variants in the sortilin-related receptor (SORL1) and the sortilin-related vacuolar protein sorting 10 (VPS10) domain- containing receptor 1 (SORCS1) are associated with increased risk of Alzheimer’s disease (AD), declining cognitive function and altered amyloid precursor protein (APP) processing. We explored whether other members of the (VPS10) domain-containing receptor protein family (the sortilin-related VPS10 domain-containing receptors 2 and 3 (SORCS2 and SORCS3) and sortilin (SORT1)) would have similar effects either independently or together. We conducted the analyses in a large Caucasian case control data set (n ¼ 11 840 cases, 10 931 controls) to determine the associations between single nucleotide polymorphisms (SNPs) in all the five homologous genes and AD risk. Evidence for interactions between SNPs in the five VPS10 domain receptor family genes was determined in epistatic statistical models. We also compared expression levels of SORCS2, SORCS3 and SORT1 in AD and control brains using microarray gene expression analyses and assessed the effects of these genes on c-secretase processing of APP. -
Sorcs2-Mediated NR2A Trafficking Regulates Motor Deficits in Huntington’S Disease
SorCS2-mediated NR2A trafficking regulates motor deficits in Huntington’s disease Qian Ma, … , Lino Tessarollo, Barbara L. Hempstead JCI Insight. 2017;2(9):e88995. https://doi.org/10.1172/jci.insight.88995. Research Article Neuroscience Motor dysfunction is a prominent and disabling feature of Huntington’s disease (HD), but the molecular mechanisms that dictate its onset and progression are unknown. The N-methyl-D-aspartate receptor 2A (NR2A) subunit regulates motor skill development and synaptic plasticity in medium spiny neurons (MSNs) of the striatum, cells that are most severely impacted by HD. Here, we document reduced NR2A receptor subunits on the dendritic membranes and at the synapses of MSNs in zQ175 mice that model HD. We identify that SorCS2, a vacuolar protein sorting 10 protein–domain (VPS10P- domain) receptor, interacts with VPS35, a core component of retromer, thereby regulating surface trafficking of NR2A in MSNs. In the zQ175 striatum, SorCS2 is markedly decreased in an age- and allele-dependent manner. Notably, SorCS2 selectively interacts with mutant huntingtin (mtHTT), but not WT huntingtin (wtHTT), and is mislocalized to perinuclear clusters in striatal neurons of human HD patients and zQ175 mice. Genetic deficiency of SorCS2 accelerates the onset and exacerbates the motor coordination deficit of zQ175 mice. Together, our results identify SorCS2 as an interacting protein of mtHTT and demonstrate that impaired SorCS2-mediated NR2A subunit trafficking to dendritic surface of MSNs is, to our knowledge, a novel mechanism contributing to motor coordination deficits of HD. Find the latest version: https://jci.me/88995/pdf RESEARCH ARTICLE SorCS2-mediated NR2A trafficking regulates motor deficits in Huntington’s disease Qian Ma,1 Jianmin Yang,2,3 Teresa A. -
Analysis of the Subcellular Localization of Proteins Implicated in Alzheimer's
Submitted for partial fulfilment of Doctor of Philosophy (PhD) ANALYSIS OF THE SUBCELLULAR LOCALIZATION OF PROTEINS IMPLICATED IN ALZHEIMER’S DISEASE Anne Hwee Ling Lim Supervised by Assoc Prof. Michael Lardelli and Dr. Joan Kelly Department of Genetics and Evolution School of Biological Sciences The University of Adelaide Australia DECLARATION I certify that this work contains no material which has been accepted for the award of any other degree or diploma in my name, in any university or other tertiary institution and, to the best of my knowledge and belief, contains no material previously published or written by another person, except where due reference has been made in the text. In addition, I certify that no part of this work will, in the future, be used in a submission in my name, for any other degree or diploma in any university or other tertiary institution without the prior approval of the University of Adelaide and where applicable, any partner institution responsible for the joint award of this degree. I give consent to this copy of my thesis when deposited in the University Library, being made available for loan and photocopying, subject to the provisions of the Copyright Act 1968. The author acknowledges that copyright of published works contained within this thesis resides with the copyright holder(s) of those works. I also give permission for the digital version of my thesis to be made available on the web, via the University’s digital research repository, the Library Search and also through web search engines, unless permission has been granted by the University to restrict access for a period of time. -
Large-Scale Interaction Effects Reveal Missing Heritability in Schizophrenia, Bipolar Disorder and Posttraumatic Stress Disorder
OPEN Citation: Transl Psychiatry (2017) 7, e1089; doi:10.1038/tp.2017.61 www.nature.com/tp ORIGINAL ARTICLE Large-scale interaction effects reveal missing heritability in schizophrenia, bipolar disorder and posttraumatic stress disorder HJ Woo, C Yu, K Kumar and J Reifman Genetic susceptibility factors behind psychiatric disorders typically contribute small effects individually. A possible explanation for the missing heritability is that the effects of common variants are not only polygenic but also non-additive, appearing only when interactions within large groups are taken into account. Here, we tested this hypothesis for schizophrenia (SZ) and bipolar disorder (BP) disease risks, and identified genetic factors shared with posttraumatic stress disorder (PTSD). When considered independently, few single-nucleotide polymorphisms (SNPs) reached genome-wide significance. In contrast, when SNPs were selected in groups (containing up to thousands each) and the collective effects of all interactions were estimated, the association strength for SZ/BP rose dramatically with a combined sample size of 7187 cases and 8309 controls. We identified a large number of genes and pathways whose association was significant only when interaction effects were included. The gene with highest association was CSMD1, which encodes a negative regulator of complement activation. Pathways for glycosaminoglycan (GAG) synthesis exhibited strong association in multiple contexts. Taken together, highly associated pathways suggested a pathogenesis mechanism where maternal immune activation causes disruption of neurogenesis (compounded by impaired cell cycle, DNA repair and neuronal migration) and deficits in cortical interneurons, leading to symptoms triggered by synaptic pruning. Increased risks arise from GAG deficiencies causing complement activation and excessive microglial action. -
PSCAN: Spatial Scan Tests Guided by Protein Structures Improve Complex Disease Gene Discovery and Signal Variant Detection
Tang et al. Genome Biology (2020) 21:217 https://doi.org/10.1186/s13059-020-02121-0 Method Open Access PSCAN: Spatial scan tests guided by protein structures improve complex disease gene discovery and signal variant detection Zheng-Zheng Tang1,2* , Gregory R. Sliwoski3, Guanhua Chen1, Bowen Jin4, William S. Bush4,5, Bingshan Li6* and John A. Capra3,7,8,9* *Correspondence: [email protected]; Abstract [email protected]; Germline disease-causing variants are generally more spatially clustered in protein [email protected] 1Department of Biostatistics and 3-dimensional structures than benign variants. Motivated by this tendency, we develop Medical Informatics, University of a fast and powerful protein-structure-based scan (PSCAN) approach for evaluating Wisconsin-Madison, Madison gene-level associations with complex disease and detecting signal variants. We validate 53715, WI, USA 2Wisconsin Institute for Discovery, PSCAN’s performance on synthetic data and two real data sets for lipid traits and Madison 53715, WI, USA Alzheimer’s disease. Our results demonstrate that PSCAN performs competitively with Full list of author information is available at the end of the article existing gene-level tests while increasing power and identifying more specific signal variant sets. Furthermore, PSCAN enables generation of hypotheses about the molecular basis for the associations in the context of protein structures and functional domains. Keywords: Gene-level association tests, Protein 3D structures, Spatial scan approach, Risk variant detection Background Many whole exome or whole genome sequencing association studies, such as the National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine Program (NHLBI TOPMed) and the National Human Genome Research Institute Genome Sequencing Program (NHGRI GSP), seek to identify genes and variants that influence human com- plex diseases and traits [1–3]. -
Network-Based Translation of GWAS Findings to Pathobiology and Drug
medRxiv preprint doi: https://doi.org/10.1101/2020.01.15.20017160; this version posted January 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Network-based Translation of GWAS Findings to Pathobiology and Drug Repurposing for Alzheimer’s Disease Jiansong Fang1,#, Pengyue Zhang2,#, Quan Wang3,4,#, Yadi Zhou1, Chien-Wei Chiang2, Rui Chen3,4, Bin Zhang1, Bingshan Li3,4, Stephen J. Lewis5, Andrew A. Pieper6, Lang Li2,*, Jeffrey Cummings7,8, Feixiong Cheng1,9,10,* 1Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA 2Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH 43210 3Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN 37212, USA. 4Vanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, TN 37212, USA. 5Department of Pediatrics, Case Western Reserve University, Cleveland, Ohio 44106, USA 6Harrington Discovery Institute, University Hospital Case Medical Center; Department of Psychiatry, Case Western Reserve University, Geriatric Research Education and Clinical Centers, Louis Stokes Cleveland VAMC, Cleveland, OH 44106, USA 7Cleveland Clinic Lou Ruvo Center for Brain Health, Las Vegas, NV 89106, USA. 8Department of Brain Health, School of Integrated Health Sciences, University of NOTE:Nevada This preprint Las reports Vegas, new Lasresearch Vegas, that has NV not been89154, certified USA. by peer review and should not be used to guide clinical practice. 1 medRxiv preprint doi: https://doi.org/10.1101/2020.01.15.20017160; this version posted January 18, 2020.