70380048.Pdf

Total Page:16

File Type:pdf, Size:1020Kb

70380048.Pdf Washington University School of Medicine Digital Commons@Becker Open Access Publications 2012 The distinct roles of the nucleus and nucleus- cytoskeleton connections in three-dimensional cell migration Shyam B. Khatau Johns Hopkins University Ryan J. Bloom Johns Hopkins University Saumendra Bajpai Johns Hopkins University David Razafsky Washington University School of Medicine in St. Louis Shu Zhang Washington University School of Medicine in St. Louis See next page for additional authors Follow this and additional works at: http://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Khatau, Shyam B.; Bloom, Ryan J.; Bajpai, Saumendra; Razafsky, David; Zhang, Shu; Giri, Anjil; Wu, Pei-Hsun; Marchand, Jorge; Celedon, Alfredo; Hale, Christopher M.; Sun, Sean X.; Hodzic, Didier; and Wirtz, Denis, ,"The distinct roles of the nucleus and nucleus-cytoskeleton connections in three-dimensional cell migration." Scientific Reports.2,. Article number: 488. (2012). http://digitalcommons.wustl.edu/open_access_pubs/1345 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Shyam B. Khatau, Ryan J. Bloom, Saumendra Bajpai, David Razafsky, Shu Zhang, Anjil Giri, Pei-Hsun Wu, Jorge Marchand, Alfredo Celedon, Christopher M. Hale, Sean X. Sun, Didier Hodzic, and Denis Wirtz This open access publication is available at Digital Commons@Becker: http://digitalcommons.wustl.edu/open_access_pubs/1345 The distinct roles of the nucleus and nucleus-cytoskeleton connections in SUBJECT AREAS: BIOPHYSICS three-dimensional cell migration COMPUTATIONAL BIOLOGY Shyam B. Khatau1,2*, Ryan J. Bloom1*#, Saumendra Bajpai1,21, David Razafsky3, Shu Zang3, Anjil Giri1,2, CELL ADHESION Pei-Hsun Wu1,2, Jorge Marchand1,2, Alfredo Celedon2,4,5, Christopher M. Hale1,2, Sean X. Sun1,2,4, CELL SIGNALLING Didier Hodzic3 & Denis Wirtz1,2 Received 1Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, Baltimore, Maryland 21218, USA, 2Johns 27 March 2012 Hopkins Physical Sciences - Oncology Center, The Johns Hopkins University, Baltimore, Maryland 21218, USA, 3Department of Ophthalmology, Washington University School of Medicine, St. Louis, MO 63110, USA, 4Department of Mechanical Engineering, Accepted 5 30 May 2012 The Johns Hopkins University, Baltimore, Maryland 21218, USA, Department of Mechanical Engineering, Pontificia Universidad Cato´lica de Chile, P.O. Box 306, Santiago, 6904411, Chile. Published 3 July 2012 Cells often migrate in vivo in an extracellular matrix that is intrinsically three-dimensional (3D) and the role of actin filament architecture in 3D cell migration is less well understood. Here we show that, while recently identified linkers of nucleoskeleton to cytoskeleton (LINC) complexes play a minimal role in conventional Correspondence and 2D migration, they play a critical role in regulating the organization of a subset of actin filament bundles – requests for materials the perinuclear actin cap - connected to the nucleus through Nesprin2giant and Nesprin3 in cells in 3D should be addressed to collagen I matrix. Actin cap fibers prolong the nucleus and mediate the formation of pseudopodial D.W. ([email protected]) protrusions, which drive matrix traction and 3D cell migration. Disruption of LINC complexes disorganizes the actin cap, which impairs 3D cell migration. A simple mechanical model explains why LINC complexes and the perinuclear actin cap are essential in 3D migration by providing mechanical support to the * These authors formation of pseudopodial protrusions. contributed equally to this work. he roles of actin filament dynamics and network organization in conventional cell migration and morpho- logy on flat substrates have been studied extensively1,2. However, fibroblasts often migrate in vivo in an # Current address: extracellular matrix that is intrinsically three-dimensional (3D) and the role of actin filament architecture in T 3–5 Department of 3D cell migration is less well-understood . In particular, whether recently discovered connections between 6 Bioengineering, nucleus and cytoskeleton mediated by Linkers of the Nucleoskeleton to the Cytoskeleton (LINC) complexes play any role in cell shape, cell migration, and associated protrusion activity in 3D extracellular matrices is unknown7. Stanford University, This question is important since protrusion activity plays a central role in 3D migration8,9, as pseudopodial Stanford, California, protrusion processes allow cells to probe the pericellular matrix, locally attach to and pull on surrounding fibers, USA. and detach from them dynamically10. Corresponding local remodelling of the 3D matrix, which does not occur in 1Current address: conventional 2D migration, is required for effective cell migration inside a 3D matrix11. This question is also Department of important because cells on planar substrates display a flattened fan-like morphology, while cells completely Biomedical embedded in a more physiological 3D matrix environment often adopt a spindle-like morphology well suited 11–15 Engineering, Cornell to negotiate tight matrices . University, Ithaca, LINC complexes are protein assemblies that span the nuclear envelope and mediate physical connections 6 New York, USA. between the nuclear lamina and the cytoskeleton . These connections are mediated by interactions between SUN (Sad1/UNC-84) domain–containing proteins and KASH (Klarsicht/ANC-1/Syne-1 homology) domain–con- taining proteins at the outer nuclear membrane16–21. The down-regulation of both Sun1 and Sun2 prevents the localization of Nesprin-2 giant at the nuclear envelope6,22. The expression of either the recombinant SUN domain of Sun1 and Sun2 within the ER lumen or the KASH domain of Nesprins (nuclear envelope spectrins; also Syne) 1, 2, and 3 results in the displacement of all Nesprins from the NE to the ER6,22,23. The KASH domain of Nesprins 1, 2, and 3 can interact promiscuously with either Sun1 or Sun223. Whether Nesprins and interactions between Nesprins and Sun proteins play a role in 3D cell migration are unknown. Here we use quantitative functional live-cell assays to show that LINC complexes play a critical role in regulating 3D actin architecture in cells in 3D matrix, and mediate protrusion dynamics, which in turn drive SCIENTIFIC REPORTS | 2 : 488 | DOI: 10.1038/srep00488 1 www.nature.com/scientificreports 3D matrix remodeling and 3D cell migration. We first show how elongated shape 85% of the time (Figs. 1L and 2C). Accordingly, the lamin A/C deficiency, which disrupts LINC complexes at the nuclear global reduction of pseudopodial activity in Lmna2/2 cells faithfully envelope24,25, induces a migration phenotype only in 3D collagen reflected the small fraction of time that these cells spent in the matrices, not on conventional 2D substrates. To establish the elongated morphology (compare results in Fig 2C to Fig. 2D). molecular mechanism underlying this 3D matrix-specific defect, Similar differential protrusion activity was observed for the pair of we examined the role of LINC complexes and found that LINC control (scrambled shRNA) and shRNA lamin A/C-depleted C2C12 complex molecules Nesprin 2 giant and Nesprin 3 differentially cells (Fig. 1M). Moreover, the speed of Lmna2/2 cells in the elongated modulate 3D migration by directly regulating the nuclear connec- shape was not significantly different from that of Lmna1/1 cells in the tions and organization of a subset of actin filament bundles attached elongated shape (data not shown), providing additional evidence to the nuclear envelope, the perinuclear actin cap26–28. This three- that the difference in speed between Lmna2/2 and Lmna1/1 cells dimensional version of the recently characterized perinuclear actin stems from their difference in protrusion activity. cap observed in a wide range of human and rodent cells on 2D Protrusion activity is driven by actin filament re-organization; substrates28 in turn directs the formation and dynamics of pseudo- therefore to understand the observed differences in protrusion activ- podial protrusions, the main protrusions that control the ability of a ity, we investigated the actin filament organization of Lmna2/2 and cell to pull on and remodel its surrounding matrix. A simple mech- Lmna1/1 cells in 3D matrix. Actin filament organization of Lmna1/1 anical model suggests why the nucleus and nucleo-cytoskeleton con- MEFs was not overtly different from that of Lmna2/2 MEFs on 2D nections play no significant role in 2D migration, but are central in collagen substrates, with the exception of the perinuclear actin cap, a 3D migration. contractile actin filament structure that wraps around the nucleus and shapes it26–28, which was absent in Lmna2/2 MEFs (Fig. 2, A and Results B). Moreover, our previous work has shown that the number, size, Three-dimensional, not two-dimensional, cell migration depends and shape of both focal adhesions were identical in these two cell lines, when they were placed on conventional flat substrates25. on nuclear lamin A/C. Here, we investigate the potential role of 1/1 2/2 lamin A/C in the spontaneous migration of fibroblasts, which in However, confocal light microscopy of Lmna and Lmna vivo involves individual cells moving within a 3D collagen I-rich MEFs embedded in 3D collagen I matrix revealed drastic differences 29 2/2 in actin filament
Recommended publications
  • Dr. Denis Wirtz Professor of Chemical and Biomolecular Engineering, Vice Provost for Research Johns Hopkins University
    Dr. Denis Wirtz Professor of Chemical and Biomolecular Engineering, Vice Provost for Research Johns Hopkins University Biography In his role as vice provost for research, Dr. Wirtz focuses on the current and future health of the university’s research enterprise, including institutional research compliance, research administration and development, and cross-divisional research initiatives, such as the Bloomberg Distinguished Professorships, the Johns Hopkins Catalyst and Discovery Awards, and the President’s Frontier Awards. A Johns Hopkins faculty member since 1994, Wirtz studies the biophysical properties of healthy and diseased cells, including interactions between adjacent cells and the role of cellular architecture on nuclear shape and gene expression. He holds the T.H. Smoot Professorship in the Whiting School of Engineering with secondary appointments in the School of Medicine. He has authored more than 200 peer-reviewed articles, and his research has been cited more than 14,000 times. Abstract “Cancer cell biology in 3D “ Two-dimensional (2D) in vitro culture systems have for a number of years provided a controlled and versatile environment for mechanistic studies of cell adhesion, polarization, and migration, three interrelated cell functions critical to cancer metastasis. However, the organization and functions of focal adhesion proteins, protrusion machinery, and microtubule-based polarization in cells embedded in physiologically more relevant 3D extracellular matrices is qualitatively different from their organization and functions on conventional 2D planar substrates. This talk will describe the implications of the dependence of focal adhesion protein-based cell migration on micro-environmental dimensionality (1D vs. 2D vs. 3D), how cell micromechanics plays a critical role in promoting local cell invasion, and associated validation in mouse models.
    [Show full text]
  • Gilkes JBC 2013.Pdf
    Glycobiology and Extracellular Matrices: Hypoxia-inducible Factor 1 (HIF-1) Promotes Extracellular Matrix Remodeling under Hypoxic Conditions by Inducing P4HA1, P4HA2, and PLOD2 Expression in Fibroblasts Daniele M. Gilkes, Saumendra Bajpai, Pallavi Chaturvedi, Denis Wirtz and Gregg L. Semenza J. Biol. Chem. 2013, 288:10819-10829. doi: 10.1074/jbc.M112.442939 originally published online February 19, 2013 Access the most updated version of this article at doi: 10.1074/jbc.M112.442939 Find articles, minireviews, Reflections and Classics on similar topics on the JBC Affinity Sites. Alerts: • When this article is cited • When a correction for this article is posted Click here to choose from all of JBC's e-mail alerts Supplemental material: http://www.jbc.org/content/suppl/2013/02/21/M112.442939.DC1.html This article cites 53 references, 21 of which can be accessed free at http://www.jbc.org/content/288/15/10819.full.html#ref-list-1 Downloaded from http://www.jbc.org/ at JOHNS HOPKINS UNIVERSITY on October 12, 2013 THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 288, NO. 15, pp. 10819–10829, April 12, 2013 © 2013 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. Hypoxia-inducible Factor 1 (HIF-1) Promotes Extracellular Matrix Remodeling under Hypoxic Conditions by Inducing P4HA1, P4HA2, and PLOD2 Expression in Fibroblasts*□S Received for publication, December 6, 2012, and in revised form, January 17, 2013 Published, JBC Papers in Press, February 19, 2013, DOI 10.1074/jbc.M112.442939 Daniele M. Gilkes‡§¶1, Saumendra Bajpai¶ʈ, Pallavi Chaturvedi‡§, Denis Wirtz¶ʈ, and Gregg L.
    [Show full text]
  • JHU Return to Research Guidance Phase 1 Guidance: Updated July 14, 2020
    JHU Return to Research Guidance Phase 1 Guidance: Updated July 14, 2020 Table of Contents Introduction and Executive Summary ................................................................................................................ 2 Guiding Principles ................................................................................................................................................. 3 Phases .................................................................................................................................................................... 3 Part One: Health and Safety ................................................................................................................................. 8 Part Two: PI Preparation ....................................................................................................................................... 10 Part Three: Lab Personnel .................................................................................................................................... 12 Part Four: Libraries, Archives and Museums ...................................................................................................... 13 Part Five: Clinical and Human Subjects Research .............................................................................................. 15 Part Six: Undergraduate Research ....................................................................................................................... 17 NEW: Part Seven: Resuming Research in Non-laboratory
    [Show full text]
  • JHU Return to Research Guidance Phase 1 Guidance: Updated August 10, 2020
    JHU Return to Research Guidance Phase 1 Guidance: Updated August 10, 2020 Table of Contents Introduction and Executive Summary ................................................................................................................ 2 Guiding Principles ................................................................................................................................................. 3 Phases .................................................................................................................................................................... 3 Updated 7/22/20: Part One: Health and Safety ................................................................................................. 8 Part Two: PI Preparation ....................................................................................................................................... 10 Part Three: Lab Personnel .................................................................................................................................... 12 Part Four: Libraries, Archives and Museums ...................................................................................................... 13 Updated 7/31/20: Part Five: Clinical and Human Subjects Research .............................................................. 15 Updated 8/10/20 Part Six: Undergraduate Research ........................................................................................ 17 New 7/16/20 : Part Seven: Resuming Research in Non-laboratory Settings ................................................
    [Show full text]
  • The State of American Science July 12, 2017 1-2 P.M
    The State of American Science July 12, 2017 1-2 p.m. (Lunch Provided) National Press Club – Holeman Lounge Moderated by Jeffery Selingo Join the Association of American Universities and The Science Coalition for an on-the-record discussion with senior research officers from top U.S. universities about the state of science in the United States Robert Clark, Provost and Senior Vice President for Research, University of Rochester An expert in the science of acoustics and in bionanomanufacturing, Dr. Clark’s research in these areas has led to more than 130 journal publications and earned him several awards. (Full Bio) Stephen E. Cross, Executive Vice President for Research, Georgia Tech A retired military officer and past member of the Defense Science Board and the Air Force Scientific Advisory Board, Dr. Cross has published widely on leadership, innovation, culture change, software engineering, and technology transition. (Full Bio) Suresh Garimella, Executive Vice President for Research and Partnerships, Purdue University The co-author of over 500 widely cited archival publications and 12 patents, Dr. Garimella is an expert in micro- and nano-scale transport phenomena, thermal management and energy efficiency in electronics systems, and renewable and sustainable energy systems technology and policy. (Full Bio) Jeanne Hossenlopp, Vice President for Research and Innovation, Marquette University A chemist who has taught at the undergraduate and graduate level, Dr. Hossenlopp’s research career began by exploring the fundamental details of how energy flows during laser-induced chemical reactions. She is the recipient of multiple teaching awards. (Full Bio) Eric D. Isaacs, Executive Vice President for Research, Innovation & National Laboratories, University of Chicago A condensed matter physicist whose work focuses on quantum materials, Dr.
    [Show full text]
  • Microrheology and ROCK Signaling of Human Endothelial Cells Embedded in a 3D Matrix
    Biophysical Journal Volume 91 November 2006 3499–3507 3499 Microrheology and ROCK Signaling of Human Endothelial Cells Embedded in a 3D Matrix Porntula Panorchan,* Jerry S. H. Lee,* Thomas P. Kole,* Yiider Tseng,y and Denis Wirtz*z *Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, Baltimore, Maryland 21218; yDepartment of Chemical Engineering, University of Florida, Gainesville, Florida 32611; and zDepartment of Material Science and Engineering, Howard Hughes Medical Institute Graduate Training Program, and Institute for NanoBioTechnology, The Johns Hopkins University, Baltimore, Maryland 21218 ABSTRACT Cell function is profoundly affected by the geometry of the extracellular environment confining the cell. Whether and how cells plated on a two-dimensional matrix or embedded in a three-dimensional (3D) matrix mechanically sense the dimensionality of their environment is mostly unknown, partly because individual cells in an extended matrix are inaccessible to conventional cell-mechanics probes. Here we develop a functional assay based on multiple particle tracking microrheology coupled with ballistic injection of nanoparticles to measure the local intracellular micromechanical properties of individual cells embedded inside a matrix. With our novel assay, we probe the mechanical properties of the cytoplasm of individual human umbilical vein endothelial cells (HUVECs) embedded in a 3D peptide hydrogel in the presence or absence of vascular endothelial growth factor (VEGF). We found that VEGF treatment, which enhances endothelial migration, increases the compliance and reduces the elasticity of the cytoplasm of HUVECs in a matrix. This VEGF-induced softening response of the cytoplasm is abrogated by specific Rho-kinase (ROCK) inhibition. These results establish combined particle-tracking microrheology and ballistic injection as the first method able to probe the micromechanical properties and mechanical response to agonists and/or drug treatments of individual cells inside a matrix.
    [Show full text]
  • Chembe BOND Editorial Team: Secured Tenure-Track Faculty Appointments in Has Attracted Over the Years
    !"#$%&#"'()$% &*$+)$**,)$+ $*-%&.,"/&0#*&1*'2,0/*$0&".& 3#*/)324&2$1& 5)"/"4*3642,& 37895*&5"$1 *$+)$**,)$+ FALL 2010 Joseph L. Katz, professor emeritus, celebrates a half-century of academic work. IN THIS ISSUE: Professor Katz Moves to Professor Emeritus DEPARTMENT NEWS. 2 n the Saturday eve of Labor Day weekend, What’s more, he has been honored as Maryland nearly 100 colleagues, friends, and family Chemist of the Year, a John Simon Guggenheim STUDENT INVOLVEMENT . 3 Omembers gathered at the Inn at the Fellow, American Association for the Advancement of AWARDS & HONORS . 4 Colonnade restaurant in Baltimore to celebrate the Science Fellow, and American Physical Society Fellow. FACULTY NEWS . 5 academic work of Joseph L. Katz, considered by He also is creator of an international biennial nucle- FACULTY RESEARCH. 8 many to be a founding father of the Whiting School ation symposium. of Engineering’s Department of Chemical and “Globally, Joe is the leading expert in the field of ALUMNI NEWS. 9 Biomolecular Engineering. Guests included colleagues nucleation phenomena. He is the expert in the world COMMUNITY OUTREACH . 10 from as far away as Japan and as close as WSE’s in that field,” says ChemBE Professor and WSE Vice Maryland Hall, where Katz maintains a spacious sun- Dean for Research Marc Donohue. “Here at Hopkins, lit office as professor emeritus. he has had a tremendous impact on the culture and A world expert in homogeneous nucleation (the value system of the department.” process that includes the making of bubbles in the Katz’s arrival at Hopkins in 1979 coincided with beer and champagne served at the event), Katz has a the Whiting School again being named a separate reputation among faculty as an intellectual power- academic division on the Homewood campus.
    [Show full text]
  • Cytoskeletal Tension Induces the Polarized Architecture of the Nucleus
    Biomaterials 48 (2015) 161e172 Contents lists available at ScienceDirect Biomaterials journal homepage: www.elsevier.com/locate/biomaterials Cytoskeletal tension induces the polarized architecture of the nucleus * * Dong-Hwee Kim a, b, , Denis Wirtz a, b, c, a Johns Hopkins Physical Sciences e Oncology Center, The Johns Hopkins University, Baltimore, MD 21218, USA b Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA c Department of Pathology and Oncology and Sydney Kimmel Comprehensive Cancer Center, The Johns Hopkins School of Medicine, Baltimore, MD 21205, USA article info abstract Article history: The nuclear lamina is a thin filamentous meshwork that provides mechanical support to the nucleus and Received 16 September 2014 regulates essential cellular processes such as DNA replication, chromatin organization, cell division, and Accepted 20 January 2015 differentiation. Isolated horizontal imaging using fluorescence and electron microscopy has long sug- Available online 12 February 2015 gested that the nuclear lamina is composed of structurally different A-type and B-type lamin proteins and nuclear lamin-associated membrane proteins that together form a thin layer that is spatially Keywords: isotropic with no apparent difference in molecular content or density between the top and bottom of the Nuclear lamina nucleus. Chromosomes are condensed differently along the radial direction from the periphery of the Lamin A/C Actin cap nucleus to the nuclear center; therefore, chromatin accessibility for gene expression is different along the Cell mechanics nuclear radius. However, 3D confocal reconstruction reveals instead that major lamin protein lamin A/C Nuclear organization forms an apically polarized Frisbee-like dome structure in the nucleus of adherent cells.
    [Show full text]
  • The LINC-Anchored Actin Cap Connects the Extracellular Milieu to the Nucleus for Ultrafast Mechanotransduction." Scientific Reports
    Washington University School of Medicine Digital Commons@Becker Open Access Publications 2013 The INL C-anchored actin cap connects the extracellular milieu to the nucleus for ultrafast mechanotransduction Allison B. Chambliss Johns Hopkins University Shyam B. Khatau Johns Hopkins University Nicholas Erdenberger Johns Hopkins University D. Kyle Robinson Oregon Health and Science University Didier Hodzic Washington University School of Medicine in St. Louis See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Chambliss, Allison B.; Khatau, Shyam B.; Erdenberger, Nicholas; Robinson, D. Kyle; Hodzic, Didier; Longmore, Gregory D.; and Wirtz, Denis, ,"The LINC-anchored actin cap connects the extracellular milieu to the nucleus for ultrafast mechanotransduction." Scientific Reports.,. Article number: 1087. (2013). https://digitalcommons.wustl.edu/open_access_pubs/1332 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Allison B. Chambliss, Shyam B. Khatau, Nicholas Erdenberger, D. Kyle Robinson, Didier Hodzic, Gregory D. Longmore, and Denis Wirtz This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/open_access_pubs/1332 The LINC-anchored actin cap connects the extracellular
    [Show full text]
  • Chembe BONDENGINEERING
    JOHNS HOPKINS ENGINEERING NEWS FROM THE DEPARTMENT OF CHEMICAL AND BIOMOLECULAR FALL 2009 ChemBE BONDENGINEERING Primary ovarian cancer cells stained for actin (green) and nuclear DNA (red) showing characteristically distorted nuclear morphology. IN THIS ISSUE: Engineers Join Fight Against Cancer DEPARTMENT NEWS. 2 iologists, your monopoly on cancer and postdoctoral programs to provide students and research has ended. Make way for postdocs with formal training at the interface of engi- STUDENT NEWS. 3 neering and cancer biology. the engineers. AWARDS & HONORS . 4 The center will set up a couple of core facilities: BAs part of an impressive $14.8 million National an advanced microscopy core, with a confocal micro- FACULTY NEWS . 5 Cancer Institute (NCI) initiative, the new Johns scope and capabilities for the advanced imaging of live ALUMNI NEWS. 7 Hopkins Engineering in Oncology Center is coming to cells and tissues; and a nano/microfabrication core, Baltimore, with three professors from the Department with instrumentation capable of making microfluidic ChemBE grad students lend a hand in of Chemical and Biomolecular Engineering as project devices and nanoparticles. the community as part of a citywide leaders: Denis Wirtz, PhD, Sharon Gerecht, PhD, and day of service. See page 3. These core facilities will provide necessary tools, Konstantinos Konstantopoulos, PhD. Nationwide, but another of the center’s key components will there will be 12 centers total, all working together to involve computation. According to Wirtz, computa- vanquish cancer. tional and theoretical efforts will allow researchers not Wirtz will direct the new center. “For too long, only to analyze data but to develop models that bring not enough room has been made for nonconventional about a deeper understanding of cancer.
    [Show full text]
  • Lessons from Johns Hopkins University
    Emergency seed funding for COVID-19 research: lessons from Johns Hopkins University Julie Messersmith, … , Marc Lennon, Denis Wirtz J Clin Invest. 2020. https://doi.org/10.1172/JCI145615. Viewpoint In-Press Preview Seed grant programs are an efficient mechanism for universities to invest in high-risk ideas, incite collaborative research, support early career faculty, and direct faculty towards a specific goal. At the outset of the COVID-19 pandemic, Johns Hopkins leadership quickly mobilized to support research teams as they pivoted to gather preliminary data and seek solutions to save lives. Here we discuss key lessons learned from the program. Find the latest version: https://jci.me/145615/pdf Emergency seed funding for COVID-19 research: lessons from Johns Hopkins University Julie Messersmith,1 Chasmine Stoddart-Osumah,1 Marc Lennon,1 and Denis Wirtz1,2,3 1 Office of the Provost, The Johns Hopkins University, Baltimore, Maryland, USA 2 Department of Chemical and Biomolecular Engineering, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland, USA 3 Sidney Kimmel Comprehensive Cancer Center, and Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA Address correspondence to: Julie Messersmith, 3400 N. Charles Street, 382 Garland Hall, Baltimore, Maryland 21218, USA. Phone: 410.516.2825; Email: [email protected]. COI: JM, CSO and ML declare that no conflict of interest exists. DW is the co-founder and co-owner of AbMeta Therapeutics, Inc. He holds US Patent US20160256404A1. Seed grant programs are an efficient mechanism for universities to invest in high-risk ideas, incite collaborative research, support early career faculty, and direct faculty towards a specific goal.
    [Show full text]
  • In Situ Characterization of the 3D Microanatomy of the Pancreas and Pancreatic
    bioRxiv preprint doi: https://doi.org/10.1101/2020.12.08.416909; this version posted December 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. In situ characterization of the 3D microanatomy of the pancreas and pancreatic cancer at single cell resolution Ashley Kiemen1, Alicia M. Braxton2, Mia P. Grahn1, Kyu Sang Han1, Jaanvi Mahesh Babu2, Rebecca Reichel2, Falone Amoa2, Seung-Mo Hong3, Toby C. Cornish4, Elizabeth D. Thompson2, Laura D. Wood2, Ralph H. Hruban2, Pei-Hsun Wu1*, Denis Wirtz1,2,6,7* 1 Department of Chemical and Biomolecular Engineering, The Johns Hopkins University, Baltimore, Maryland 21218, USA 2 Department of Pathology, The Sol Goldman Pancreatic Cancer Research Center, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA 3 Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea 4 Department of Pathology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA 5 Department of Oncology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA 6 Department of Materials Science and Engineering, The Johns Hopkins University, Baltimore, Maryland 21218, USA 7 Johns Hopkins Physical Sciences - Oncology Center, The Johns Hopkins University, Baltimore, Maryland 21218, USA *Corresponding authors: Denis Wirtz ([email protected]) and Pei-Hsun Wu ([email protected]) Keywords: digital pathology, deep learning, pancreatic cancer, cancer invasion bioRxiv preprint doi: https://doi.org/10.1101/2020.12.08.416909; this version posted December 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder.
    [Show full text]