A Link Between Inflammation and Metastasis

Total Page:16

File Type:pdf, Size:1020Kb

A Link Between Inflammation and Metastasis Oncogene (2015) 34, 424–435 & 2015 Macmillan Publishers Limited All rights reserved 0950-9232/15 www.nature.com/onc ORIGINAL ARTICLE A link between inflammation and metastasis: serum amyloid A1 and A3 induce metastasis, and are targets of metastasis-inducing S100A4 MT Hansen1,8, B Forst1,8, N Cremers2,3, L Quagliata2, N Ambartsumian1,4, B Grum-Schwensen1, J Klingelho¨ fer1,4, A Abdul-Al1, P Herrmann5, M Osterland5, U Stein5, GH Nielsen6, PE Scherer7, E Lukanidin1, JP Sleeman2,3,9 and M Grigorian1,4,9 S100A4 is implicated in metastasis and chronic inflammation, but its function remains uncertain. Here we establish an S100A4- dependent link between inflammation and metastatic tumor progression. We found that the acute-phase response proteins serum amyloid A (SAA) 1 and SAA3 are transcriptional targets of S100A4 via Toll-like receptor 4 (TLR4)/nuclear factor-kB signaling. SAA proteins stimulated the transcription of RANTES (regulated upon activation normal T-cell expressed and presumably secreted), G-CSF (granulocyte-colony-stimulating factor) and MMP2 (matrix metalloproteinase 2), MMP3, MMP9 and MMP13. We have also shown for the first time that SAA stimulate their own transcription as well as that of proinflammatory S100A8 and S100A9 proteins. Moreover, they strongly enhanced tumor cell adhesion to fibronectin, and stimulated migration and invasion of human and mouse tumor cells. Intravenously injected S100A4 protein induced expression of SAA proteins and cytokines in an organ-specific manner. In a breast cancer animal model, ectopic expression of SAA1 or SAA3 in tumor cells potently promoted widespread metastasis formation accompanied by a massive infiltration of immune cells. Furthermore, coordinate expression of S100A4 and SAA in tumor samples from colorectal carcinoma patients significantly correlated with reduced overall survival. These data show that SAA proteins are effectors for the metastasis-promoting functions of S100A4, and serve as a link between inflammation and tumor progression. Oncogene (2015) 34, 424–435; doi:10.1038/onc.2013.568; published online 27 January 2014 Keywords: inflammation; metastasis; S100A4; serum amyloid A INTRODUCTION (MMPs).6–12 SAA can signal via Toll-like receptors (TLRs) and 9,13 The microenvironment surrounding tumor cells, including cells of nuclear factor-kB (NF-kB). In mice, SAA3 contributes to the 14 the immune system and proinflammatory factors, have a key role establishment of lung premetastatic niches, which are 15 in regulating metastasis formation.1,2 Although different microenvironments that foster metastasis formation. subclasses of immune cells can inhibit or promote metastasis, We have previously implicated the S100 family member S100A4 chronic inflammation in tumors generally predicts poor in both tumor progression and in inflammatory diseases such as 16–18 prognosis.3 Serum amyloid A (SAA) is a family of highly rheumatoid arthritis, psoriasis and dermato/polymyosites. homologous acute-phase proteins whose expression and S100 proteins require calcium-induced oligomerization for their accumulation in the blood is observed during inflammation and activity, and are involved in the regulation of proliferation, 19,20 has been associated with tumor progression and reduced survival survival, differentiation and motility. S100A4 expression is in many human cancers.4 SAA1 and SAA2 are the major acute- enhanced in highly metastatic CSML100 mouse mammary phase plasma isoforms. A third acute-phase isoform SAA3 is adenocarcinoma cells compared with poorly metastatic CSML0 expressed in rodents, but is a transcribed pseudogene in humans.5 cells, and functionally contributes to metastasis.21–25 Furthermore, In vivo concentrations of SAAs increase in the blood during the the metastatic behavior of the mouse adenocarcinoma cell line response to trauma, infection, inflammation and neoplasia, and VMR is determined by the stroma, and is stimulated by S100A4- serve to regulate homeostatically lipid metabolism and transport, expressing fibroblasts, indicating that S100A4 can promote immune cell chemotaxis and other inflammatory processes. SAA metastasis formation through both autocrine and paracrine proteins regulate the expression of cytokines including mechanisms.26 Clinical studies also demonstrate that augmented interleukins, granulocyte-colony-stimulating factor (G-CSF) and expression of S100A4 in primary tumors correlates with poor tumor necrosis factor-a, as well as matrix metalloproteinases prognosis (reviewed in Helfman et al.27). S100A4-mediated 1Danish Cancer Society Research Center, Copenhagen, Denmark; 2Universita¨tsmedizin Mannheim, University of Heidelberg, Mannheim, Germany; 3KIT Karlsruhe, Eggenstein- Leopoldshafen, Germany; 4Neuro-Oncology Group, Laboratory of Neural Plasticity, Institute of Neuroscience and Pharmacology, Faculty of Health Sciences, Copenhagen University, Copenhagen, Denmark; 5Experimental and Clinical Research Center, Charite´ Universita¨tsmedizin Berlin, at the Max-Delbru¨ck Center for Molecular Medicine, Berlin, Germany; 6Air Liquide Danmark A/S, Horsens, Denmark and 7Touchstone Diabetes Center, University of Texas Southwestern Medical Center, Dallas, TX, USA. Correspondence: Dr M Grigorian, Neuro-Oncology Group, Laboratory of Neural Plasticity, Institute of Neuroscience and Pharmacology, Faculty of Health Sciences, Copenhagen University, Blegdamsvej 3B, Copenhagen 2200, Denmark. E-mail: [email protected] 8These authors contributed equally to this work. 9These authors contributed equally to this work. Received 3 July 2013; revised 6 December 2013; accepted 7 December 2013; published online 27 January 2014 S100A4-induced SAA expression promotes metastasis MT Hansen et al 425 metastasis is associated with extensive T-cell infiltration into both expression by mouse recS100A4 (Figure 1e and Supplementary the primary tumor and sites of metastasis.28 Despite the extensive Figure S1D). In addition, mutant forms of hS100A4 (moA4mt1 and evidence implicating S100A4 in metastasis formation, the moA4mt2) that cannot form oligomers had an attenuated ability mechanism by which it exerts its effects remains uncertain. to induce SAA activation (Figure 1e and Supplementary Figure Here we found that SAA proteins are transcriptional targets of S1D). These data demonstrate that S100A4 specifically stimulates S100A4. In turn, SAA proteins stimulated both their own the expression of SAA in VMR cells. transcription and that of a variety of cytokines and MMPs, and promoted chemotactic migration and adhesion to fibronectin by tumor cells. Ectopic SAA expression in experimental tumors SAA augments the metastasis-associated properties of tumor cells sufficed to augment strongly metastasis formation, and was in vitro accompanied by a marked immune cell infiltration. Consistently, We next examined whether SAA proteins modify tumor cell coexpression of SAA and S100A4 correlated with poor prognosis properties associated with metastasis. VMR cells were transduced in human colorectal cancer patients. These data provide an with SAA1 and SAA3 retroviral expression vectors to obtain the important link between the metastasis-promoting and proinflam- stable SAA-expressing cell lines VMR/SAA1 and VMR/SAA3. Cells matory effects of S100A4, and suggest that the induction of SAA transduced with the empty vector (VMR/CTL) served as controls. expression is a major means by which S100A4 exerts these effects. Expression and secretion of SAA proteins was verified by western blotting (Supplementary Figure S2A). In subsequent experiments, the use of retrovirally transduced cells compared with exo- RESULTS genously added SAA protein (either as CM or as recombinant S100A4 induces expression of proinflammatory genes, including protein) allowed paracrine and autocrine effects to be compared. SAA family members Both VMR/SAA1 and VMR/SAA3 cells adhered much more To investigate how S100A4 promotes metastasis, we used strongly to fibronectin than the VMR/CTL cells (Figure 2a), but not microarrays to transcriptionally profile VMR tumor cells treated or to laminin or collagen (Supplementary Figure S2B). Effects of SAA non-treated for 24 h with the active multimeric form of the on cell motility were assessed by incubating wounded monolayers recombinant human S100A4 (hS100A4) protein. Of the 75 genes of mouse CSML100 and human MDA-MB-231 and SW480 tumor upregulated in response to hS100A4, more than 30% are cells with CM from VMR/SAA1, VMR/SAA3 and VMR/CTL cells, or associated with inflammation (Table 1). The most strongly with medium supplemented with recSAAs. Effects on the motility upregulated genes included the acute-phase reactants (SAA1 and of mouse embryonic fibroblasts were also examined, as S100A4 SAA3), cytokines and their receptors (CXCL1, CSF1, CCL4, INFAR2), stimulates the motility of activated fibroblasts and recruits them to the proinflammatory S100 family member S100A8, inflammation- tumors, promoting metastasis.29 In all cases, SAA-containing associated proteases and immune cell-specific genes. media induced a significant increase in motility compared with Given their upregulation in response to S100A4 and the control media (Figures 2b and c and Supplementary Figures S2C– literature correlating their expression with poor prognosis, we E). Both recSAA1 and recSAA3 also exerted chemotactic effects in determined whether SAA1 and SAA3 (hereafter referred to a dose-dependent manner on CSML100 tumor cells after 6 h in generically as SAA) might be mediators of S100A4-induced Transwell migration/invasion assays (Figure 2d). Significantly
Recommended publications
  • Cellular and Plasma Proteomic Determinants of COVID-19 and Non-COVID-19 Pulmonary Diseases Relative to Healthy Aging
    RESOURCE https://doi.org/10.1038/s43587-021-00067-x Cellular and plasma proteomic determinants of COVID-19 and non-COVID-19 pulmonary diseases relative to healthy aging Laura Arthur1,8, Ekaterina Esaulova 1,8, Denis A. Mogilenko 1, Petr Tsurinov1,2, Samantha Burdess1, Anwesha Laha1, Rachel Presti 3, Brian Goetz4, Mark A. Watson1, Charles W. Goss5, Christina A. Gurnett6, Philip A. Mudd 7, Courtney Beers4, Jane A. O’Halloran3 and Maxim N. Artyomov1 ✉ We examine the cellular and soluble determinants of coronavirus disease 2019 (COVID-19) relative to aging by performing mass cytometry in parallel with clinical blood testing and plasma proteomic profiling of ~4,700 proteins from 71 individuals with pul- monary disease and 148 healthy donors (25–80 years old). Distinct cell populations were associated with age (GZMK+CD8+ T cells and CD25low CD4+ T cells) and with COVID-19 (TBET−EOMES− CD4+ T cells, HLA-DR+CD38+ CD8+ T cells and CD27+CD38+ B cells). A unique population of TBET+EOMES+ CD4+ T cells was associated with individuals with COVID-19 who experienced moderate, rather than severe or lethal, disease. Disease severity correlated with blood creatinine and urea nitrogen levels. Proteomics revealed a major impact of age on the disease-associated plasma signatures and highlighted the divergent contri- bution of hepatocyte and muscle secretomes to COVID-19 plasma proteins. Aging plasma was enriched in matrisome proteins and heart/aorta smooth muscle cell-specific proteins. These findings reveal age-specific and disease-specific changes associ- ated with COVID-19, and potential soluble mediators of the physiological impact of COVID-19.
    [Show full text]
  • Primary Antibodies Flyer
    Primary Antibodies Your choice of size and format Format Concentration Size CF® dye conjugates (13 colors) 0.1 mg/mL 100 or 500 uL Biotin, HRP or AP conjugates 0.1 mg/mL 100 or 500 uL R-PE, APC, or Per-CP conjugates 0.1 mg/mL 250 uL Purified, with BSA 0.1 mg/mL 100 or 500 uL Purified, BSA-free (Mix-n-Stain™ Ready) 1 mg/mL 50 uL Advantages Figure 1. IHC staining of human prostate Figure 2. Flow cytometry analysis of U937 • More than 1000 monoclonal antibodies carcinoma with anti-ODC1 clone cells with anti-CD31/PECAM clone C31.7, • Growing selection of monoclonal rabbit ODC1/485. CF647 conjugate (blue) or isotype control (orange). antibodies • Validated in IHC and other applications Your choice of 13 bright and photostable CF® dyes • Choose from 13 bright and stable CF® dyes CF® dye Ex/Em (nm) Features • Also available with R-PE, APC, PerCP, HRP, AP, CF®405S 404/431 • Better fit for the 450/50 flow cytometer channel than Alexa Fluor® 405 or biotin CF®405M 408/452 • More photostable than Pacific Blue®, with less green spill-over • Purified antibodies available BSA-free, 1 mg/mL, • Compatible with super-resolution imaging by SIM ready to use for Mix-n-Stain™ labeling or other CF®488A 490/515 • Less non-specific binding and spill-over than Alexa Fluor® 488 conjugation • Very photostable and pH-insensitive • Compatible with super-resolution imaging by TIRF • Offered in affordable 100 uL size CF®543 541/560 • Brighter than Alexa Fluor® 546 CF®555 555/565 • Brighter than Cy®3 • Validated in multicolor super-resolution imaging by STORM CF®568
    [Show full text]
  • Defining Functional Interactions During Biogenesis of Epithelial Junctions
    ARTICLE Received 11 Dec 2015 | Accepted 13 Oct 2016 | Published 6 Dec 2016 | Updated 5 Jan 2017 DOI: 10.1038/ncomms13542 OPEN Defining functional interactions during biogenesis of epithelial junctions J.C. Erasmus1,*, S. Bruche1,*,w, L. Pizarro1,2,*, N. Maimari1,3,*, T. Poggioli1,w, C. Tomlinson4,J.Lees5, I. Zalivina1,w, A. Wheeler1,w, A. Alberts6, A. Russo2 & V.M.M. Braga1 In spite of extensive recent progress, a comprehensive understanding of how actin cytoskeleton remodelling supports stable junctions remains to be established. Here we design a platform that integrates actin functions with optimized phenotypic clustering and identify new cytoskeletal proteins, their functional hierarchy and pathways that modulate E-cadherin adhesion. Depletion of EEF1A, an actin bundling protein, increases E-cadherin levels at junctions without a corresponding reinforcement of cell–cell contacts. This unexpected result reflects a more dynamic and mobile junctional actin in EEF1A-depleted cells. A partner for EEF1A in cadherin contact maintenance is the formin DIAPH2, which interacts with EEF1A. In contrast, depletion of either the endocytic regulator TRIP10 or the Rho GTPase activator VAV2 reduces E-cadherin levels at junctions. TRIP10 binds to and requires VAV2 function for its junctional localization. Overall, we present new conceptual insights on junction stabilization, which integrate known and novel pathways with impact for epithelial morphogenesis, homeostasis and diseases. 1 National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK. 2 Computing Department, Imperial College London, London SW7 2AZ, UK. 3 Bioengineering Department, Faculty of Engineering, Imperial College London, London SW7 2AZ, UK. 4 Department of Surgery & Cancer, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK.
    [Show full text]
  • Β-Catenin Knockdown Affects Mitochondrial Biogenesis and Lipid Metabolism in Breast Cancer Cells
    ORIGINAL RESEARCH published: 27 July 2017 doi: 10.3389/fphys.2017.00544 β-Catenin Knockdown Affects Mitochondrial Biogenesis and Lipid Metabolism in Breast Cancer Cells Daniele Vergara 1, 2 †, Eleonora Stanca 1, 2 †, Flora Guerra 1, Paola Priore 3, Antonio Gaballo 3, Julien Franck 4, Pasquale Simeone 5, Marco Trerotola 6, Stefania De Domenico 7, Isabelle Fournier 4, Cecilia Bucci 1, Michel Salzet 4, Anna M. Giudetti 1* and Michele Maffia 1, 2* 1 Department of Biological and Environmental Sciences and Technologies, University of Salento, Lecce, Italy, 2 Laboratory of Clinical Proteomic, “Giovanni Paolo II” Hospital, Lecce, Italy, 3 CNR NANOTEC - Institute of Nanotechnology, Lecce, Italy, 4 University of Lille, Institut national de la santé et de la recherche médicale, U-1192 - Laboratoire Protéomique, Réponse Edited by: Inflammatoire et Spectrométrie de Masse-PRISM, Lille, France, 5 Unit of Cytomorphology, CeSI-MeT and Department of Andrei Surguchov, Medicine and Aging Sciences, School of Medicine and Health Sciences, University “G. d’Annunzio,” Chieti, Italy, 6 Unit of Kansas University of Medical Center Cancer Pathology, CeSI-MeT and Department of Medical, Oral and Biotechnological Sciences, University “G. d’Annunzio,” Research Institute, United States Chieti, Italy, 7 C.N.R. Unit of Lecce, Institute of Food Production Sciences, Lecce, Italy Reviewed by: Kamal Datta, β-catenin plays an important role as regulatory hub in several cellular processes including Georgetown University, United States Silvana Gaetani, cell adhesion, metabolism, and epithelial mesenchymal transition. This is mainly achieved Sapienza Università di Roma, Italy by its dual role as structural component of cadherin-based adherens junctions, and as Clizia Chinello, University of Milano-Bicocca, Italy a key nuclear effector of the Wnt pathway.
    [Show full text]
  • Review Article S100 Protein Family in Human Cancer
    Am J Cancer Res 2014;4(2):89-115 www.ajcr.us /ISSN:2156-6976/ajcr0000257 Review Article S100 protein family in human cancer Hongyan Chen, Chengshan Xu, Qing’e Jin, Zhihua Liu The State Key Laboratory of Molecular Oncology, Cancer Institute and Hospital, Chinese Academy of Medical Sci- ences and Peking Union Medical College, Beijing 100021, China Received January 16, 2014; Accepted February 10, 2014; Epub March 1, 2014; Published March 15, 2014 Abstract: S100 protein family has been implicated in multiple stages of tumorigenesis and progression. Among the S100 genes, 22 are clustered at chromosome locus 1q21, a region frequently rearranged in cancers. S100 protein possesses a wide range of intracellular and extracellular functions such as regulation of calcium homeostasis, cell proliferation, apoptosis, cell invasion and motility, cytoskeleton interactions, protein phosphorylation, regulation of transcriptional factors, autoimmunity, chemotaxis, inflammation and pluripotency. Many lines of evidence suggest that altered expression of S100 proteins was associated with tumor progression and prognosis. Therefore, S100 proteins might also represent potential tumor biomarkers and therapeutic targets. In this review, we summarize the evidence connecting S100 protein family and cancer and discuss the mechanisms by which S100 exerts its diverse functions. Keywords: S100 proteins, proliferation, apoptosis, invasion, migration, pluripotency, biomarker Introduction and their relationship with different cancers because of their involvement in a variety of bio- The S100 gene family is the largest subfamily logical events which are closely related to of calcium binding proteins of EF-hand type [1]. tumorigenesis and cancer progression. The To date, at least 25 distinct members of this association between S100 proteins and cancer subgroup have been described.
    [Show full text]
  • Steroid-Dependent Regulation of the Oviduct: a Cross-Species Transcriptomal Analysis
    University of Kentucky UKnowledge Theses and Dissertations--Animal and Food Sciences Animal and Food Sciences 2015 Steroid-dependent regulation of the oviduct: A cross-species transcriptomal analysis Katheryn L. Cerny University of Kentucky, [email protected] Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Cerny, Katheryn L., "Steroid-dependent regulation of the oviduct: A cross-species transcriptomal analysis" (2015). Theses and Dissertations--Animal and Food Sciences. 49. https://uknowledge.uky.edu/animalsci_etds/49 This Doctoral Dissertation is brought to you for free and open access by the Animal and Food Sciences at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Animal and Food Sciences by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known.
    [Show full text]
  • 1 Metabolic Dysfunction Is Restricted to the Sciatic Nerve in Experimental
    Page 1 of 255 Diabetes Metabolic dysfunction is restricted to the sciatic nerve in experimental diabetic neuropathy Oliver J. Freeman1,2, Richard D. Unwin2,3, Andrew W. Dowsey2,3, Paul Begley2,3, Sumia Ali1, Katherine A. Hollywood2,3, Nitin Rustogi2,3, Rasmus S. Petersen1, Warwick B. Dunn2,3†, Garth J.S. Cooper2,3,4,5* & Natalie J. Gardiner1* 1 Faculty of Life Sciences, University of Manchester, UK 2 Centre for Advanced Discovery and Experimental Therapeutics (CADET), Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Sciences Centre, Manchester, UK 3 Centre for Endocrinology and Diabetes, Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, UK 4 School of Biological Sciences, University of Auckland, New Zealand 5 Department of Pharmacology, Medical Sciences Division, University of Oxford, UK † Present address: School of Biosciences, University of Birmingham, UK *Joint corresponding authors: Natalie J. Gardiner and Garth J.S. Cooper Email: [email protected]; [email protected] Address: University of Manchester, AV Hill Building, Oxford Road, Manchester, M13 9PT, United Kingdom Telephone: +44 161 275 5768; +44 161 701 0240 Word count: 4,490 Number of tables: 1, Number of figures: 6 Running title: Metabolic dysfunction in diabetic neuropathy 1 Diabetes Publish Ahead of Print, published online October 15, 2015 Diabetes Page 2 of 255 Abstract High glucose levels in the peripheral nervous system (PNS) have been implicated in the pathogenesis of diabetic neuropathy (DN). However our understanding of the molecular mechanisms which cause the marked distal pathology is incomplete. Here we performed a comprehensive, system-wide analysis of the PNS of a rodent model of DN.
    [Show full text]
  • Calprotectin and Calgranulin C Serum Levels in Bacterial Sepsis
    Diagnostic Microbiology and Infectious Disease 93 (2019) 219–226 Contents lists available at ScienceDirect Diagnostic Microbiology and Infectious Disease journal homepage: www.elsevier.com/locate/diagmicrobio ☆ Calprotectin and calgranulin C serum levels in bacterial sepsis Eva Bartáková a,MarekŠtefan a,Alžběta Stráníková a, Lenka Pospíšilová b, Simona Arientová a,Ondřej Beran a, Marie Blahutová b, Jan Máca a,c,MichalHoluba,⁎ a Department of Infectious Diseases, First Faculty of Medicine, Charles University and Military University Hospital Prague, U Vojenské nemocnice 1200, 169 02 Praha 6, Czech Republic b Department of Clinical Biochemistry, Military University Hospital Prague, U Vojenské nemocnice 1200, 169 02 Praha 6, Czech Republic c Department of Anesthesiology and Intensive Care Medicine, University Hospital of Ostrava, 17. listopadu 1790/5, 708 52 Ostrava-Poruba, Czech Republic article info abstract Article history: The aim of this study was to evaluate the serum levels of calprotectin and calgranulin C and routine biomarkers in Received 26 March 2018 patients with bacterial sepsis (BS). The initial serum concentrations of calprotectin and calgranulin C were signif- Received in revised form 2 October 2018 icantly higher in patients with BS (n = 66) than in those with viral infections (n = 24) and the healthy controls Accepted 10 October 2018 (n = 26); the level of calprotectin was found to be the best predictor of BS, followed by the neutrophil- Available online 17 October 2018 lymphocyte count ratio (NLCR) and the level of procalcitonin (PCT). The white blood cell (WBC) count and the NLCR rapidly returned to normal levels, whereas PCT levels normalized later and the increased levels of Keywords: Sepsis calprotectin, calgranulin C, and C-reactive protein persisted until the end of follow-up.
    [Show full text]
  • Proteomic Analysis of Two Non-Bronchoscopic Methods of Sampling the Lungs of Patients with the Acute Respiratory Distress Syndrome (ARDS)
    Clin Proteom (2007) 3:30–41 DOI 10.1007/s12014-007-9002-8 Proteomic Analysis of Two Non-Bronchoscopic Methods of Sampling the Lungs of Patients with the Acute Respiratory Distress Syndrome (ARDS) Dong W. Chang & Giuseppe Colucci & Tomas Vaisar & Trevor King & Shinichi Hayashi & Gustavo Matute-Bello & Roger Bumgarner & Jay Heinecke & Thomas R. Martin & Guido M. Domenighetti Published online: 5 January 2008 # Humana Press Inc. 2007 Abstract BAL samples, 13.2% were increased in s-Cath compared to Objective The collection of lung fluid using a suction catheter mini-BAL, and 18.4% were decreased in s-Cath compared (s-Cath) and non-bronchoscopic bronchoalveolar lavage to mini-BAL. For each of the seven subjects, overabun- (mini-BAL) are two minimally invasive methods of sampling dance analysis showed that the actual number of differen- the distal airspaces in patients with the acute respiratory tially expressed spots in the mini-BAL and s-Cath sample distress syndrome (ARDS). The objective of this study was to was more than the expected number if the samples were determine the similarity of the lung fluid samples recovered identical. There were nine proteins that were consistently by these methods using proteomic analysis. differentially expressed between the mini-BAL and s-Cath Methods Distal lung fluid samples were collected from samples. Of these nine proteins, five are abundantly found seven mechanically ventilated patients with ARDS using in neutrophils or airway epithelial cells, suggesting that the both s-Cath and mini-BAL in each patient and compared s-Cath may sample the bronchial airways to a greater extent using two-dimensional difference gel electrophoresis.
    [Show full text]
  • Identification of Zebrafish Calcium Toolkit Genes and Their Expression
    G C A T T A C G G C A T genes Article Identification of Zebrafish Calcium Toolkit Genes and Their Expression in the Brain Iga Wasilewska 1,2 , Rishikesh Kumar Gupta 1,2 , Oksana Palchevska 1 and Jacek Ku´znicki 1,* 1 International Institute of Molecular and Cell Biology in Warsaw, Trojdena 4, 02-109 Warsaw, Poland; [email protected] (I.W.); [email protected] (R.K.G.); [email protected] (O.P.) 2 Postgraduate School of Molecular Medicine, Warsaw Medical University, 61 Zwirki˙ i Wigury St., 02-091 Warsaw, Poland * Correspondence: [email protected] Received: 28 February 2019; Accepted: 13 March 2019; Published: 18 March 2019 Abstract: Zebrafish are well-suited for in vivo calcium imaging because of the transparency of their larvae and the ability to express calcium probes in various cell subtypes. This model organism has been used extensively to study brain development, neuronal function, and network activity. However, only a few studies have investigated calcium homeostasis and signaling in zebrafish neurons, and little is known about the proteins that are involved in these processes. Using bioinformatics analysis and available databases, the present study identified 491 genes of the zebrafish Calcium Toolkit (CaTK). Using RNA-sequencing, we then evaluated the expression of these genes in the adult zebrafish brain and found 380 hits that belonged to the CaTK. Based on quantitative real-time polymerase chain reaction arrays, we estimated the relative mRNA levels in the brain of CaTK genes at two developmental stages. In both 5 dpf larvae and adult zebrafish, the highest relative expression was observed for tmbim4, which encodes a Golgi membrane protein.
    [Show full text]
  • Regulation of Canonical Wnt Signalling by the Ciliopathy Protein MKS1 and the E2
    bioRxiv preprint doi: https://doi.org/10.1101/2020.01.08.897959; this version posted March 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Regulation of canonical Wnt signalling by the ciliopathy protein MKS1 and the E2 ubiquitin-conjugating enzyme UBE2E1. Katarzyna Szymanska1, Karsten Boldt2, Clare V. Logan1, Matthew Adams1, Philip A. Robinson1+, Marius Ueffing2, Elton Zeqiraj3, Gabrielle Wheway1,4#, Colin A. Johnson1#* *corresponding author: [email protected] ORCID: 0000-0002-2979-8234 # joint last authors + deceased 1 Leeds Institute of Medical Research, School of Medicine, University of Leeds, Leeds, UK 2 Institute of Ophthalmic Research, Center for Ophthalmology, University of Tübingen, Tübingen, Germany 3 Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK 4 Faculty of Medicine, University of Southampton, Human Development and Health, UK; University Hospital Southampton NHS Foundation Trust, UK 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.08.897959; this version posted March 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract A functional primary cilium is essential for normal and regulated signalling. Primary ciliary defects cause a group of developmental conditions known as ciliopathies, but the precise mechanisms of signal regulation by the cilium remain unclear.
    [Show full text]
  • Certificate of Analysis – Technical Data Sheet
    CERTIFICATE OF ANALYSIS – TECHNICAL DATA SHEET Product name S100A12, Human, clone 203 Catalog number HM2369 Lot number - Expiry date - Volume 1 ml Amount 100 µg Formulation 0.2 µm filtered in PBS+0.1%BSA+0.02%NaN3 Concentration 100 µg/ml Host Species Mouse IgG2a Conjugate None Endotoxin N.A. Purification Protein G Storage 4°C Application notes IHC-F IHC-P IF FC FS IA IP W Reference # Yes ● ● No N.D. ● ● ● ● ● ● N.D.= Not Determined; IHC = Immuno histochemistry; F = Frozen sections; P = Paraffin sections; IF = Immuno Fluorescence; FC = Flow Cytometry; FS = Functional Studies; IA = Immuno Assays; IP = Immuno Precipitation; W = Western blot W: Recombinant S100A12 0.25 µg was loaded. The concentration of HM2369 was 2 µg/ml. Dilutions to be used depend on detection system applied. It is recommended that users test the reagent and determine their own optimal dilutions. The typical starting working dilution is 1:50. IA: Antibody clone 2 can be used as capture and detection antibody. W: A reduced sample treatment and SDS-Page was used. The band size is ~11 kDa. General Information Description The monoclonal antibody clone 203 recognizes S100 calcium-binding protein A12 (S100A12). The antibody does not cross-react with family members S100A7, S100A8 and S100A9 and S100A8/A9 heterodimers. S100A12, also known as calgranulin C, is a member of the S100 protein family. To date, the family consists of 22 members. S100 proteins are low molecular weight calcium binding proteins. The proteins consist of 2 calcium binding EF-hands located on the termini flanked by hydrophobic hinge regions.
    [Show full text]