Área De Conservación Guanacaste Echinoderms, North Pacific of Costa Rica
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Fucosylated Chondroitin Sulfates from the Sea Cucumbers Paracaudina Chilensis and Holothuria Hilla: Structures and Anticoagulant Activity
marine drugs Article Fucosylated Chondroitin Sulfates from the Sea Cucumbers Paracaudina chilensis and Holothuria hilla: Structures and Anticoagulant Activity Nadezhda E. Ustyuzhanina 1,*, Maria I. Bilan 1, Andrey S. Dmitrenok 1 , Alexandra S. Silchenko 2, Boris B. Grebnev 2, Valentin A. Stonik 2, Nikolay E. Nifantiev 1 and Anatolii I. Usov 1,* 1 N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, 119991 Moscow, Russia; [email protected] (M.I.B.); [email protected] (A.S.D.); [email protected] (N.E.N.) 2 G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of the Russian Academy of Sciences, Prospect 100 let Vladivostoku 159, 690022 Vladivostok, Russia; [email protected] (A.S.S.); [email protected] (B.B.G.); [email protected] (V.A.S.) * Correspondence: [email protected] (N.E.U.); [email protected] (A.I.U.); Tel.: +7-495-135-8784 (N.E.U.) Received: 29 September 2020; Accepted: 26 October 2020; Published: 28 October 2020 Abstract: Fucosylated chondroitin sulfates (FCSs) PC and HH were isolated from the sea cucumbers Paracaudina chilensis and Holothuria hilla, respectively. The purification of the polysaccharides was carried out by anion-exchange chromatography on a DEAE-Sephacel column. The structural characterization of the polysaccharides was performed in terms of monosaccharide and sulfate content, as well as using a series of nondestructive NMR spectroscopic methods. Both polysaccharides were shown to contain a chondroitin core [ 3)-β-d-GalNAc (N-acethyl galactosamine)-(1 4)-β-d-GlcA ! ! (glucuronic acid)-(1 ]n, bearing sulfated fucosyl branches at O-3 of every GlcA residue in the ! chain. -
Taxonomía Y Biogeografía Ecológica De Los Equinoideos Irregulares (Echinoidea: Irregularia) De México
Taxonomía y biogeografía ecológica de los equinoideos irregulares (Echinoidea: Irregularia) de México Alejandra Martínez-Melo1, 2, Francisco Alonso Solís-Marín2, Blanca Estela Buitrón-Sánchez3 & Alfredo Laguarda-Figueras2 1. Posgrado de Ciencias del Mar y Limnología (PCML), Universidad Nacional Autónoma de México (UNAM). México, D. F. 04510, México; [email protected] 2. Laboratorio de Sistemática y Ecología de Equinodermos, Instituto de Ciencias del Mar y Limnología (ICML), UNAM. Apdo. Post. 70-305, México, D. F. 04510, México; [email protected] 3. Departamento de Paleontología, Instituto de Geología (IG), UNAM, Cd. Universitaria, Delegación Coyoacán, México, D. F. 04510, México; [email protected] Recibido 04-VI-2014. Corregido 09-X-2014. Aceptado 04-XI-2014. Abstract: Taxonomy and ecologic biogeography of the irregular Echinoids (Echinoidea: Irregularia) from Mexico. Mexico owns 643 species of echinoderms, almost 10% of the known echinoderm species in the planet. Its geographic location -between the oceanic influences of the Western Central Atlantic and the Eastern Central Pacific- largely explains its enormous biological and ecological diversity. Research on echinoderms in Mexico began in the late nineteenth century; however, there are no reviews on its irregular echinoids. This work reviews the taxonomic and geographic information of irregular echinoids from Mexico, housed in four collections: 1) Colección Nacional de Equinodermos “Ma. Elena Caso Muñoz” from the Instituto de Ciencias del Mar y Limnología (ICML), Universidad Nacional Autónoma de México (UNAM); 2) Invertebrate Zoology Collection, Smithsonian Museum of Natural History, Washington, D.C., United States of America (USA); 3) Invertebrate Collection, Museum of Comparative Zoology, University of Harvard, Boston, Massachusetts, USA and 4) Invertebrate Zoology, Peabody Museum, Yale University, New Haven, Connecticut, USA. -
SPC Beche-De-Mer Information Bulletin #39 – March 2019
ISSN 1025-4943 Issue 39 – March 2019 BECHE-DE-MER information bulletin v Inside this issue Editorial Towards producing a standard grade identification guide for bêche-de-mer in This issue of the Beche-de-mer Information Bulletin is well supplied with Solomon Islands 15 articles that address various aspects of the biology, fisheries and S. Lee et al. p. 3 aquaculture of sea cucumbers from three major oceans. An assessment of commercial sea cu- cumber populations in French Polynesia Lee and colleagues propose a procedure for writing guidelines for just after the 2012 moratorium the standard identification of beche-de-mer in Solomon Islands. S. Andréfouët et al. p. 8 Andréfouët and colleagues assess commercial sea cucumber Size at sexual maturity of the flower populations in French Polynesia and discuss several recommendations teatfish Holothuria (Microthele) sp. in the specific to the different archipelagos and islands, in the view of new Seychelles management decisions. Cahuzac and others studied the reproductive S. Cahuzac et al. p. 19 biology of Holothuria species on the Mahé and Amirantes plateaux Contribution to the knowledge of holo- in the Seychelles during the 2018 northwest monsoon season. thurian biodiversity at Reunion Island: Two previously unrecorded dendrochi- Bourjon and Quod provide a new contribution to the knowledge of rotid sea cucumbers species (Echinoder- holothurian biodiversity on La Réunion, with observations on two mata: Holothuroidea). species that are previously undescribed. Eeckhaut and colleagues P. Bourjon and J.-P. Quod p. 27 show that skin ulcerations of sea cucumbers in Madagascar are one Skin ulcerations in Holothuria scabra can symptom of different diseases induced by various abiotic or biotic be induced by various types of food agents. -
The Sea Cucumber Holothuria (Halodeima) Atra (Jager, 1833), In
The Sea Cucumber Holothuria (Halodeima) atra (Jager, 1833), in South Tarawa Lagoon (Republic of Kiribati): Environmental Variability, Population Biology and Fishing Pressure. Teatim Tamaroa A thesis submitted as partial fulfilment for the degree of Master of Science in Marine Biology 2010 Abstract Holothuria atra or lollyfish is the most common sea cucumber in the Pacific and Indian Oceans. The current status of Holothria atra at 13 sites of South Tarawa lagoon (Republic of Kiribati) was established by using biological surveys and fishers‟ questionnaires. A preliminary investigation was conducted in order to assess how and why environmental variability and fishing pressure have affected the spatial and temporal distribution, mean abundant and mean size of this species at the sites. The 13 sites were selected randomly, and marked with a GPS on the map of South Tarawa. Sedimentary characteristics were determined for each site, and a qualitative assessment of sites health was made. Lollyfish length, biomass and abundance and transect density were calculated for each site. The weight of organic matter content and size of sediment sample were determined. Data were analysed using Kruskal- Walis (KW) and Repeated measures (RM) ANOVA tests. This thesis shows that the environmental variability could not offer reasons as to why the biological data of lollyfish varied from one site to another. However, other factors that were tested may explain the variation in biological data. Fishing pressure is one of those parameters that can regulate the lollyfish distribution and density and responses from local fishers indicate that fishing pressure is high and that the lollyfish resource is under considerable harvest pressure. -
Sphingolipids of Asteroidea and Holothuroidea: Structures and Biological Activities
marine drugs Review Sphingolipids of Asteroidea and Holothuroidea: Structures and Biological Activities Timofey V. Malyarenko 1,2,*, Alla A. Kicha 1, Valentin A. Stonik 1,2 and Natalia V. Ivanchina 1,* 1 G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of the Russian Academy of Sciences, Pr. 100-let Vladivostoku 159, 690022 Vladivostok, Russia; [email protected] (A.A.K.); [email protected] (V.A.S.) 2 Department of Bioorganic Chemistry and Biotechnology, School of Natural Sciences, Far Eastern Federal University, Sukhanova Str. 8, 690000 Vladivostok, Russia * Correspondence: [email protected] (T.V.M.); [email protected] (N.V.I.); Tel.: +7-423-2312-360 (T.V.M.); Fax: +7-423-2314-050 (T.V.M.) Abstract: Sphingolipids are complex lipids widespread in nature as structural components of biomembranes. Commonly, the sphingolipids of marine organisms differ from those of terres- trial animals and plants. The gangliosides are the most complex sphingolipids characteristic of vertebrates that have been found in only the Echinodermata (echinoderms) phylum of invertebrates. Sphingolipids of the representatives of the Asteroidea and Holothuroidea classes are the most studied among all echinoderms. In this review, we have summarized the data on sphingolipids of these two classes of marine invertebrates over the past two decades. Recently established structures, properties, and peculiarities of biogenesis of ceramides, cerebrosides, and gangliosides from starfishes and holothurians are discussed. The purpose of this review is to provide the most complete informa- tion on the chemical structures, structural features, and biological activities of sphingolipids of the Asteroidea and Holothuroidea classes. -
The Shallow-Water Macro Echinoderm Fauna of Nha Trang Bay (Vietnam): Status at the Onset of Protection of Habitats
The Shallow-water Macro Echinoderm Fauna of Nha Trang Bay (Vietnam): Status at the Onset of Protection of Habitats Master Thesis in Marine Biology for the degree Candidatus scientiarum Øyvind Fjukmoen Institute of Biology University of Bergen Spring 2006 ABSTRACT Hon Mun Marine Protected Area, in Nha Trang Bay (South Central Vietnam) was established in 2002. In the first period after protection had been initiated, a baseline survey on the shallow-water macro echinoderm fauna was conducted. Reefs in the bay were surveyed by transects and free-swimming observations, over an area of about 6450 m2. The main area focused on was the core zone of the marine reserve, where fishing and harvesting is prohibited. Abundances, body sizes, microhabitat preferences and spatial patterns in distribution for the different species were analysed. A total of 32 different macro echinoderm taxa was recorded (7 crinoids, 9 asteroids, 7 echinoids and 8 holothurians). Reefs surveyed were dominated by the locally very abundant and widely distributed sea urchin Diadema setosum (Leske), which comprised 74% of all specimens counted. Most species were low in numbers, and showed high degree of small- scale spatial variation. Commercially valuable species of sea cucumbers and sea urchins were nearly absent from the reefs. Species inventories of shallow-water asteroids and echinoids in the South China Sea were analysed. The results indicate that the waters of Nha Trang have echinoid and asteroid fauna quite similar to that of the Spratly archipelago. Comparable pristine areas can thus be expected to be found around the offshore islands in the open parts of the South China Sea. -
Phylogeny of Labidodemas and the Holothuriidae (Holothuroidea: Aspidochirotida) As Inferred from Morphology
Blackwell Science, LtdOxford, UKZOJZoological Journal of the Linnean Society0024-4082The Lin- nean Society of London, 2005? 2005 144? 103120 Original Article PHYLOGENY OF THE HOLOTHURIIDAEY. SAMYN ET AL . Zoological Journal of the Linnean Society, 2005, 144, 103–120. With 6 figures Phylogeny of Labidodemas and the Holothuriidae (Holothuroidea: Aspidochirotida) as inferred from morphology YVES SAMYN1*, WARD APPELTANS1† and ALEXANDER M. KERR2‡ 1Unit for Ecology & Systematics, Free University Brussels (VUB), Pleinlaan 2, B-1050 Brussels, Belgium 2Department of Ecology and Evolutionary Biology, Osborn Zoölogical Laboratories, Yale University, New Haven CT 06520, USA Received July 2003; accepted for publication November 2004 The Holothuriidae is one of the three established families within the large holothuroid order Aspidochirotida. The approximately 185 recognized species of this family are commonly classified in five nominal genera: Actinopyga, Bohadschia, Holothuria, Pearsonothuria and Labidodemas. Maximum parsimony analyses on morphological char- acters, as inferred from type and nontype material of the five genera, revealed that Labidodemas comprises highly derived species that arose from within the genus Holothuria. The paraphyletic status of the latter, large (148 assumed valid species) and morphologically diverse genus has recently been recognized and is here confirmed and discussed. Nevertheless, we adopt a Darwinian or eclectic classification for Labidodemas, which we retain at generic level within the Holothuriidae. We compare our phylogeny -
Paleontología Mexicana ISSN (Revista Impresa): 0185-478X ISSN (Revista Electrónica): 2007-5189 Número De Certificado De Licitud De Título: No
DATOS Paleontología Mexicana • Año 3 • Número 65 (versión impresa) • Volumen 4 (versión electrónica) • Febrero 2015 Título: Paleontología Mexicana ISSN (revista impresa): 0185-478X ISSN (revista electrónica): 2007-5189 Número de certificado de licitud de título: No. 04-2012-081311041800-203 Número de reserva de derechos al uso exclusivo del título: No. 04-2012-081311041800-203 Tipo de publicación: Periódica Periodicidad: Semestral Número de publicación: Volumen 65 Número 1 Fecha de publicación: Febrero 2015 Año de inicio de la publicación: 1956 Editada por: Universidad Nacional Autónoma de México, Ciudad Universitaria Domicilio: Instituto de Geología, UNAM, Ciudad Universitaria, Circuito de la Investigación Científica, Copilco El Alto, Coyoacán, 04360 México, D.F. Paleontología Mexicana, Año 3, Número 65 impreso, Volumen 4 electrónica, febrero 2015, es una publicación semestral editada por la Universidad Nacional Autónoma de México, Ciudad Universitaria, Delegación Coyoacán, C.P. 04510, México D. F., a través del Instituto de Geología, Circuito de la Investigación Científica, Copilco, El Alto, Coyoacán, 04510 México D.F., tel. 52 55 56224312 ext 178, http://www.geologia.unam.mx/igl/, [email protected]. Editor responsable Sergio R.S. Cevallos Ferriz. Reserva de derechos al uso exclusivo No. 04- 2012-081311041800-203, ISSN: 2007-5189. Responsable de la última actualización de este número, Instituto de Geología, UNAM, Denise Viridiana Hernández Villalva, Circuito de la Investigación Científica, Copilco El Alto, Coyoacan, 04510 México D.F., fecha de última modificación, 27 de febrero del 2015. Paleontología Mexicana • Año 3 • Número 65 (versión impresa) • Volumen 4 (versión electrónica) • Febrero 2015 Crinoides del Misisípico de la región de El Bísani, 2 noroeste del Estado de Sonora, México Blanca E. -
Florida Fossil Invertebrates 2 (Pdf)
FLORIDA FOSSIL INVERTEBRATES Parl2 JANUARY 2OO2 SINGLE ISSUE: $z.OO OLIGOCENE AND MIOCENE ECHINOIDS CRAIG W. OYEN1 and ROGER W. PORTELL, lDeparlment of Geography and Earth Science Shippensburg U niversity 1871 Old Main Drive Shippensburg, PA 17257 -2299 e-mail: cwoyen @ ark.ship.edu 2Florida Museum of Natural History University of Florida P. O. Box 117800 Gainesville, FL 32611 -7800 e-mail: portell @flmnh.ufl.edu A PUBLICATTON OF THE FLORTDA PALEONTOLOGTCAL SOCIETY tNC. r,q)-.'^ .o$!oLo"€n)- .l^\ z*- il--'t- ' .,vn\'9t\ x\\I ^".{@^---M'Wa*\/i w*'"'t:.&-.d te\ 3t tu , l ". (. .]tt f-w#wlW,/ \;,6'#,/ FLORIDA FOSSIL INVERTEBRATES tssN 1536-5557 Florida Fossil lnvertebrafes is a publication of the Florida Paleontological Society, Inc., and is intended as a guide for identification of the many, common, invertebrate fossils found around the state. lt will deal solely with named species; no new taxonomic work will be included. Two parts per year will be completed with the first three parts discussing echinoids. Part 1 (published June 2001) covered Eocene echinoids, Parl2 (January 2002 publication) is about Oligocene and Miocene echinoids, and Part 3 (June 2002 publication) will be on Pliocene and Pleistocene echinoids. Each issue will be image-rich and, whenever possible, specimen images will be at natural size (1x). Some of the specimens figured in this series soon will be on display at Powell Hall, the museum's Exhibit and Education Center. Each part of the series will deal with a specific taxonomic group (e.9., echinoids) and contain a brief discussion of that group's life history along with the pertinent geological setting. -
Cell Type Phylogenetics Informs the Evolutionary Origin of Echinoderm Larval Skeletogenic Cell Identity
ARTICLE https://doi.org/10.1038/s42003-019-0417-3 OPEN Cell type phylogenetics informs the evolutionary origin of echinoderm larval skeletogenic cell identity Eric M. Erkenbrack 1,2 & Jeffrey R. Thompson3,4 1234567890():,; The multiplicity of cell types comprising multicellular organisms begs the question as to how cell type identities evolve over time. Cell type phylogenetics informs this question by com- paring gene expression of homologous cell types in distantly related taxa. We employ this approach to inform the identity of larval skeletogenic cells of echinoderms, a clade for which there are phylogenetically diverse datasets of spatial gene expression patterns. We deter- mined ancestral spatial expression patterns of alx1, ets1, tbr, erg, and vegfr, key components of the skeletogenic gene regulatory network driving identity of the larval skeletogenic cell. Here we show ancestral state reconstructions of spatial gene expression of extant eleutherozoan echinoderms support homology and common ancestry of echinoderm larval skeletogenic cells. We propose larval skeletogenic cells arose in the stem lineage of eleutherozoans during a cell type duplication event that heterochronically activated adult skeletogenic cells in a topographically distinct tissue in early development. 1 Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511 USA. 2 Yale Systems Biology Institute, Yale University, West Haven, CT 06516, USA. 3 Department of Geosciences, Baylor University, Waco, TX 76706, USA. 4 Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089-0740, USA. Correspondence and requests for materials should be addressed to E.M.E. (email: [email protected]) or to J.R.T. (email: [email protected]) COMMUNICATIONS BIOLOGY | (2019) 2:160 | https://doi.org/10.1038/s42003-019-0417-3 | www.nature.com/commsbio 1 ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-019-0417-3 ell types are evolutionary units that have diversified in once in the stem lineage of eleutherozoan echinoderms. -
Zootaxa, Actinopyga (Holothuroidea: Aspidochirotida: Holothuriidae)
Zootaxa 1138: 53–68 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1138 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) A new Indo-West Pacific species of Actinopyga (Holothuroidea: Aspidochirotida: Holothuriidae) YVES SAMYN1, DIDIER VANDENSPIEGEL2 & CLAUDE MASSIN3 1Belgian National Focal Point to the Global Taxonomy Initiative, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, B-1000 Brussels, Belgium. E-mail: [email protected] 2Department of Invertebrates, Royal Museum for Central Africa, Leuvensesteenweg 13, B-3080 Tervuren, Belgium 3Department of Invertebrates,Section Malacology, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, B-1000 Brussels, Belgium Abstract Actinopyga is one of the five genera commonly recognised in the family Holothuriidae. This small genus has sixteen species currently considered valid. The present paper describes a new Indo-West Pacific species, Actinopyga caerulea, of which the most striking character is its bluish coloration. The ossicle assemblage of the new species resembles mostly that of A. bannwarthi Panning, 1944 and A. flammea Cherbonnier, 1979. Key words: Echinodermata, Holothuroidea, Actinopyga, new species, Indo-Pacific Introduction Recent expeditions (in 2003 and 2004) to the Union des Comores, an archipelago in the northern Mozambique Channel, yielded several specimens of a species that had previously been photographed at several localities in the Pacific Ocean (Erhardt & Moosleitner 1995; Erhardt & Baensch 1998; Lane pers. comm.; Myers pers. comm.; Colin pers. comm.; see also plate 1). Cherbonnier & Féral (1984) recorded, and later Féral and Cherbonnier (1986) published a photograph of a specimen from New Caledonia which they identified incorrectly as Actinopyga crassa Panning, 1944. Other specimens have been photographed and no voucher material collected, making definitive identification impossible. -
Holothuroidea: Echinodermata) Inhabiting Two Seagrass Meadows in the Southwestern Mediterranean Sea (Mostaganem, Algeria)
Belgian Journal of Zoology www.belgianjournalzoology.be This work is licensed under a Creative Commons Attribution License (CC BY 4.0). ISSN 2295-0451 Research article https://doi.org/10.26496/bjz.2019.32 Comparison of isotopic niches of four sea cucumbers species (Holothuroidea: Echinodermata) inhabiting two seagrass meadows in the southwestern Mediterranean Sea (Mostaganem, Algeria) Nor Eddine Belbachir *,1 Gilles Lepoint 2 & Karim Mezali 1 1 Protection, Valorization of Coastal Marine Resources and Molecular Systematic Laboratory, Department of Marine Sciences and Aquaculture, Faculty of Natural Sciences and Life, University of Abdelhamid Ibn Badis-Mostaganem, P.O. Box 227, 27000, Mostaganem, Algeria. 2 MARE Centre, Laboratory of Oceanology, UR FOCUS, University of Liège, Belgium. * Corresponding author: [email protected] Abstract. Among the fauna inhabiting the Posidonia oceanica seagrass meadow, holothurians are par- ticularly abundant and provide essential ecological roles, including organic matter recycling within se- agrass sediments. This study aimed to investigate the trophic niche of four holothurians of the order Holothuriida [Holothuria poli (Delle Chiaje, 1824), Holothuria tubulosa (Gmelin, 1791), Holothuria sanctori (Delle Chiaje, 1823) and Holothuria forskali (Delle Chiaje, 1823)] inhabiting P. oceanica me- adows, through the measurement of nitrogen and carbon stable isotope ratios. Two shallow and con- trasting sites of the littoral region of Mostaganem (North West Algeria) were chosen. The first site, located in Stidia, is weakly impacted by human activities. The second site, located in Salamandre, is highly impacted by human activities (industries, harbor facilities). High values of δ15N in holothurians and their food sources were observed at both sites. The δ13C values showed a lower contribution from detritic Posidonia than in other areas.