Common SEP15 Polymorphisms and Susceptibility to Cancer: a Systematic Review and Meta-Analysis
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Composition and Evolution of the Vertebrate and Mammalian Selenoproteomes
Composition and Evolution of the Vertebrate and Mammalian Selenoproteomes The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Mariotti, Marco, Perry G. Ridge, Yan Zhang, Alexei V. Lobanov, Thomas H. Pringle, Roderic Guigo, Dolph L. Hatfield, and Vadim N. Gladyshev. 2012. Composition and evolution of the vertebrate and mammalian selenoproteomes. PLoS ONE 7(3): e33066. Published Version doi:10.1371/journal.pone.0033066 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:10341925 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Composition and Evolution of the Vertebrate and Mammalian Selenoproteomes Marco Mariotti1,2., Perry G. Ridge3., Yan Zhang1,4., Alexei V. Lobanov1, Thomas H. Pringle5, Roderic Guigo2, Dolph L. Hatfield6, Vadim N. Gladyshev1* 1 Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America, 2 Center for Genomic Regulation and Universitat Pompeu Fabra, Barcelona, Spain, 3 Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska, United States of America, 4 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China, 5 Sperling Foundation, Eugene, Oregon, United States of America, 6 Laboratory of Cancer Prevention, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America Abstract Background: Selenium is an essential trace element in mammals due to its presence in proteins in the form of selenocysteine (Sec). -
Identification and Characterization of Fep15, a New Selenocysteine-Containing Member of the Sep15 Protein Family
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Vadim Gladyshev Publications Biochemistry, Department of March 2006 Identification and characterization of Fep15, a new selenocysteine-containing member of the Sep15 protein family Sergey V. Novoselov University of Nebraska-Lincoln Deame Hua University of Nebraska-Lincoln A. V. Lobanov University of Nebraska-Lincoln Vadim N. Gladyshev University of Nebraska-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/biochemgladyshev Part of the Biochemistry, Biophysics, and Structural Biology Commons Novoselov, Sergey V.; Hua, Deame; Lobanov, A. V.; and Gladyshev, Vadim N., "Identification and characterization of Fep15, a new selenocysteine-containing member of the Sep15 protein family" (2006). Vadim Gladyshev Publications. 62. https://digitalcommons.unl.edu/biochemgladyshev/62 This Article is brought to you for free and open access by the Biochemistry, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Vadim Gladyshev Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Biochemical Journal 394:3 (March 15, 2006), pp. 575–579. doi: 10.1042/BJ20051569. Copyright © 2005 The Biochemical Society, London. Used by permission. Submitted September 22, 2005; revised October 18, 2005; accepted and prepublished online October 20, 2005; published online February 24, 2006. Identifi cation and characterization of Fep15, a new selenocysteine-containing member of the Sep15 protein family Sergey V. Novoselov, Deame Hua, Alexey V. Lobanov, and Vadim N. Gladyshev* Department of Biochemistry, University of Nebraska–Lincoln, Lincoln, NE 68588 *Corresponding author; email: [email protected] Abstract: Sec (selenocysteine) is a rare amino acid in proteins. -
Focus on the Small Heat Shock Protein HSPB1 Autofagie in De Erfelij
Faculteit Faculteit Farmaceutische, Biomedische en Diergeneeskundige wetenschappen Biochemie en Biotechnologie Autophagy in inherited peripheral neuropathies: Focus on the small heat shock protein HSPB1 Autofagie in de erfelijke perifere neuropathieën: Focus op de kleine heat shock proteïne HSPB1 Proefschrift voorgelegd tot het behalen van de graad van Doctor in de Wetenschappen: Biochemie en Biotechnologie aan de Universiteit Antwerpen. te verdedigen door Mansour HAIDAR Promotor Prof. Dr. Vincent Timmerman Antwerpen, 2018 1 2 “Haud igitur redit ad Nihilum res ulla, sed omnes Discidio redeunt in corpora materiai” Lucretius, De Rerum Natura, Book I. 250 3 4 Members of the jury Chair Prof. Dr. Wim Vanden Berghe, PhD (UA, Antwerp, Belgium) Promotor Prof. Dr. Vincent Timmerman, PhD (UA, Antwerp, Belgium) Internal jury member Prof. Dr. Wim Martinet, PhD (UA, Antwerp, Belgium) External jury members Prof. Dr. Joy Irobi (UHasselt, Hasselt, Belgium) Prof. Dr. Maurizio D’Antonio (San Raffaele Institute, Milan, Italy) Prof. Dr. Ir. Winnok De Vos (UA, Antwerp, Belgium) 5 6 Table of Contents Summary/Samenvatting 9 Rationale and Aims 13 Introduction Chapter 1 Autophagy as an emerging common pathomechanism in inherited 15 peripheral neuropathies Chapter 2 Small heat shock proteins: Their role in proteostasis 79 and neurodegeneration Results Chapter 3 HSPB1 is required for Autophagy: Insights from CMT-causing mutations 103 Chapter 4 An interactomics study of HSPB1 wild-type and mutant links it to the 129 autophagy receptor P62 Discussion 179 List of abbreviations 195 Curriculum Vitae 199 Acknowledgements 203 7 8 Summary Inherited peripheral neuropathies (IPNs) are genetically heterogeneous disorders affecting mainly the peripheral nervous system and with over 1500 mutations in more than 80 affected genes discovered so far. -
A Structural Analysis of Mide Chants
A Structural Analysis of Mide Chants GEORGE FULFORD McMaster University Introduction In this paper I shall investigate the relationship between words and im agery in seven song scrolls used by members of an Ojibwa religious society known as the Midewiwin. These texts were collected in the late 1880s by W.J. Hoffman for the Bureau of American Ethnology and subsequently published in their seventh Annual Report (Hoffman 1891).1 All the pictographs which I shall discuss were inscribed on birch bark and used by members of the Midewiwin to record chants used in their ceremonies. According to Hoffman (1891:192) these chants consisted of only a few words or short phrases. They were sung by single individuals — never in chorus — and were repeated over and over again, usually to the accompaniment of a wooden kettle drum. In a previous study (Fulford 1989) I analyzed patterns of structural variation among these pictographs and outlined how three complex symbols — the otter, bear and bird — evolved from clan emblems into pictographic markers. The focus of my earlier study was purely iconographic; in this paper I shall explore the verbal structure of Midewiwin chants in order to show some of the ways in which they were pictographically encoded. For the sake of convenience, I have limited my discussion to song scrolls sharing the otter symbol. Six of the seven scrolls that I shall examine contain this marking device. Although one (designated Scroll C in the appendix) lacks an otter, it displays many other formal similarities with Hoffman published transcriptions and translations of 23 songs performed at the White Earth Reservation in northwestern Minnesota. -
5892 Cisco Category: Standards Track August 2010 ISSN: 2070-1721
Internet Engineering Task Force (IETF) P. Faltstrom, Ed. Request for Comments: 5892 Cisco Category: Standards Track August 2010 ISSN: 2070-1721 The Unicode Code Points and Internationalized Domain Names for Applications (IDNA) Abstract This document specifies rules for deciding whether a code point, considered in isolation or in context, is a candidate for inclusion in an Internationalized Domain Name (IDN). It is part of the specification of Internationalizing Domain Names in Applications 2008 (IDNA2008). Status of This Memo This is an Internet Standards Track document. This document is a product of the Internet Engineering Task Force (IETF). It represents the consensus of the IETF community. It has received public review and has been approved for publication by the Internet Engineering Steering Group (IESG). Further information on Internet Standards is available in Section 2 of RFC 5741. Information about the current status of this document, any errata, and how to provide feedback on it may be obtained at http://www.rfc-editor.org/info/rfc5892. Copyright Notice Copyright (c) 2010 IETF Trust and the persons identified as the document authors. All rights reserved. This document is subject to BCP 78 and the IETF Trust's Legal Provisions Relating to IETF Documents (http://trustee.ietf.org/license-info) in effect on the date of publication of this document. Please review these documents carefully, as they describe your rights and restrictions with respect to this document. Code Components extracted from this document must include Simplified BSD License text as described in Section 4.e of the Trust Legal Provisions and are provided without warranty as described in the Simplified BSD License. -
Deficiency in the 15-Kda Selenoprotein Inhibits Tumorigenicity and Metastasis of Colon Cancer Cells
Published OnlineFirst April 13, 2010; DOI: 10.1158/1940-6207.CAPR-10-0003 Published Online First on April 13, 2010 as 10.1158/1940-6207.CAPR-10-0003 Research Article Cancer Prevention Research Deficiency in the 15-kDa Selenoprotein Inhibits Tumorigenicity and Metastasis of Colon Cancer Cells Robert Irons1,3,4, Petra A. Tsuji1,2,3, Bradley A. Carlson3, Ping Ouyang1,3, Min-Hyuk Yoo3, Xue-Ming Xu3, Dolph L. Hatfield3, Vadim N. Gladyshev5, and Cindy D. Davis1 Abstract Selenium has cancer-preventive activity that is mediated, in part, through selenoproteins. The role of the 15-kDa selenoprotein (Sep15) in colon cancer was assessed by preparing and using mouse colon CT26 cells stably transfected with short hairpin RNA constructs targeting Sep15. Metabolic 75Se labeling and Northern and Western blot analyses revealed that >90% of Sep15 was downregulated. Growth of the resulting Sep15-deficient CT26 cells was reduced (P < 0.01), and cells formed significantly (P < 0.001) fewer colonies in soft agar compared with control CT26 cells. Whereas most (14 of 15) BALB/c mice injected with control cells developed tumors, few (3 of 30) mice injected with Sep15-deficient cells developed tumors (P < 0.0001). The ability to form pulmonary metastases had similar results. Mice injected with the plasmid-transfected control cells had >250 lung metastases per mouse; however, mice injected with cells with downregulation of Sep15 only had 7.8 ± 5.4 metastases. To investigate molecular targets affected by Sep15 status, gene expression patterns between control and knockdown CT26 cells were compared. Ingenuity Pathways Analysis was used to analyze the 1,045 genes that were significantly (P < 0.001) affected by Sep15 deficiency. -
Kyrillische Schrift Für Den Computer
Hanna-Chris Gast Kyrillische Schrift für den Computer Benennung der Buchstaben, Vergleich der Transkriptionen in Bibliotheken und Standesämtern, Auflistung der Unicodes sowie Tastaturbelegung für Windows XP Inhalt Seite Vorwort ................................................................................................................................................ 2 1 Kyrillische Schriftzeichen mit Benennung................................................................................... 3 1.1 Die Buchstaben im Russischen mit Schreibschrift und Aussprache.................................. 3 1.2 Kyrillische Schriftzeichen anderer slawischer Sprachen.................................................... 9 1.3 Veraltete kyrillische Schriftzeichen .................................................................................... 10 1.4 Die gebräuchlichen Sonderzeichen ..................................................................................... 11 2 Transliterationen und Transkriptionen (Umschriften) .......................................................... 13 2.1 Begriffe zum Thema Transkription/Transliteration/Umschrift ...................................... 13 2.2 Normen und Vorschriften für Bibliotheken und Standesämter....................................... 15 2.3 Tabellarische Übersicht der Umschriften aus dem Russischen ....................................... 21 2.4 Transliterationen veralteter kyrillischer Buchstaben ....................................................... 25 2.5 Transliterationen bei anderen slawischen -
A Large Prospective Study of SEP15 Genetic Variation, Interaction with Plasma Selenium Levels, and Prostate Cancer Risk and Survival
A large prospective study of SEP15 genetic variation, interaction with plasma selenium levels, and prostate cancer risk and survival The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Penney, K. L., F. R. Schumacher, H. Li, P. Kraft, J. S. Morris, T. Kurth, L. A. Mucci, et al. 2010. “A Large Prospective Study of SEP15 Genetic Variation, Interaction with Plasma Selenium Levels, and Prostate Cancer Risk and Survival.” Cancer Prevention Research 3 (5): 604– 10. https://doi.org/10.1158/1940-6207.capr-09-0216. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:41292599 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA NIH Public Access Author Manuscript Cancer Prev Res (Phila). Author manuscript; available in PMC 2011 May 1. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Cancer Prev Res (Phila). 2010 May ; 3(5): 604±610. doi:10.1158/1940-6207.CAPR-09-0216. A large prospective study of SEP15 genetic variation, interaction with plasma selenium levels, and prostate cancer risk and survival Kathryn L. Penney1,2, Fredrick R. Schumacher3, Haojie Li4, Peter Kraft1, J. Steven Morris5, Tobias Kurth1,6, Lorelei A. Mucci1,2, David J. Hunter1,2, Philip W. Kantoff7, Meir J. Stampfer1,2, and Jing -
A Regulatory Role for Sec Trna in Selenoprotein Synthesis
Downloaded from rnajournal.cshlp.org on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press A regulatory role for Sec tRNA[Ser]Sec in selenoprotein synthesis RUTH R. JAMESON and ALAN M. DIAMOND Department of Human Nutrition, University of Illinois at Chicago, Chicago, Illinois 60612, USA ABSTRACT Selenium is biologically active through the functions of selenoproteins that contain the amino acid selenocysteine. This amino acid is translated in response to in-frame UGA codons in mRNAs that include a SECIS element in its 3 untranslated region, and this process requires a unique tRNA, referred to as tRNA[Ser]Sec. The translation of UGA as selenocysteine, rather than its use as a termination signal, is a candidate restriction point for the regulation of selenoprotein synthesis by selenium. A specialized reporter construct was used that permits the evaluation of SECIS-directed UGA translation to examine mechanisms of the regulation of selenoprotein translation. Using SECIS elements from five different selenoprotein mRNAs, UGA translation was quantified in response to selenium supplementation and alterations in tRNA[Ser]Sec levels and isoform distributions. Although each of the evaluated SECIS elements exhibited differences in their baseline activities, each was stimulated to a similar extent by increased selenium or tRNA[Ser]Sec levels and was inhibited by diminished levels of the methylated isoform of tRNA[Ser]Sec achieved using a dominant-negative acting mutant tRNA[Ser]Sec. tRNA[Ser]Sec was found to be limiting for UGA translation under conditions of high selenoprotein mRNA in both a transient reporter assay and in cells with elevated GPx-1 mRNA. -
<I>AUREOCOCCUS ANOPHAGEFFERENS</I>
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2016 MOLECULAR AND ECOLOGICAL ASPECTS OF THE INTERACTIONS BETWEEN AUREOCOCCUS ANOPHAGEFFERENS AND ITS GIANT VIRUS Mohammad Moniruzzaman University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Part of the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Moniruzzaman, Mohammad, "MOLECULAR AND ECOLOGICAL ASPECTS OF THE INTERACTIONS BETWEEN AUREOCOCCUS ANOPHAGEFFERENS AND ITS GIANT VIRUS. " PhD diss., University of Tennessee, 2016. https://trace.tennessee.edu/utk_graddiss/4152 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Mohammad Moniruzzaman entitled "MOLECULAR AND ECOLOGICAL ASPECTS OF THE INTERACTIONS BETWEEN AUREOCOCCUS ANOPHAGEFFERENS AND ITS GIANT VIRUS." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Microbiology. Steven W. Wilhelm, Major Professor We have read this dissertation -
On the Road to Selenocysteine
COMMENTARY On the road to selenocysteine Alan M. Diamond* Department of Human Nutrition, University of Illinois, Chicago, IL 60612 ecades ago, a mammalian purified PSTK established the substrate enzymes with antioxidant capabilities tRNA that exclusively bound specificity of this enzyme exclusively for (glutathione peroxidases) and those the UGA stop codon was both seryl-tRNA[Ser]Sec isoforms, which involved with the maintenance of the identified by using the triplet differ by only a single modified base (5). reduced cellular environment (thiore- Dbinding assay that was instrumental in It is highly significant that the initial doxin reductases) and the maturation deciphering the genetic code (1). The method of detection, a computer- of thyroxin (thyroid hormone deiodi- possibility of a naturally occurring sup- assisted analysis of genomes that were nases). Other mammalian selenopro- pressor tRNA presented the dilemma known either to contain or to be miss- teins of known function include SelP, of explaining the biological function of ing the selenoprotein synthesis machin- which is involved with selenium trans- such a molecule. In the same year, an ery, was successful at all. The presence port; SPS2, which is required for Sec equally perplexing report indicated the of PSTK in archaeal and eukaryote ge- synthesis; and SelR, a methionine sul- existence of tRNA from either rooster nomes that were known to translation- foxide reductase (reviewed in ref. 12). or rat liver that was aminoacylated ally synthesize selenoproteins, but its Although the biochemical properties with phosphoserine (2). That observa- absence in the genomes of organisms (i.e., cellular location and binding part- tion was verified several years later that do not, is consistent with the role ners) are known for several other sel- when phosphoseryl tRNA was also of PSTK indicated by Carlson et al. -
Association Between Angiotensinogen T174M Polymorphism and Ischemic Stroke: a Meta
Association between angiotensinogen T174M polymorphism and ischemic stroke: A meta- RTICLE analysis A Zilin Ou, Hongbing Chen, Gang Liu, Chuo Li1, Shaoying Lin, Jianwen Lin Department of Neurology and Stroke Center, The First Affiliated Hospital of Sun Yat-Sen University, Guangzhou 510080, 1Department of Neurology, Guangzhou Number 8 People’s Hospital of Guangzhou Medical University, Guangzhou 510440, P.R. China Background: Numerous studies have evaluated the association between the angiotensinogen (AGT) T174M polymorphism and ischemic EVIEW stroke(IS) risk. However, the specific association is still controversial. Materials and Methods: In order to explore this association more R deeply, we performed a meta-analysis. All of the relevant studies were identified from PubMed, Embase, and Chinese National Knowledge Infrastructure database up to October 2014. Statistical analyses were conducted with STATA 12.0 software. Odds ratio (OR) with 95% confidence interval (CI) values were applied to evaluate the strength of the association.Results: Six studies with 1290 cases and 1125 controls were included. No significant variation in IS risk was detected in any of the genetic models in the overall (MM vs. TT: OR = 1.64, 95% CI = 0.51-5.28; MT vs. TT: OR = 0.93, 95% CI = 0.66-1.31; dominant model: OR = 1.08, 95% CI = 0.69-1.72; recessive model: OR = 0.61,95% CI = 0.20-1.91). Taking into account the effect of ethnicity, further stratified analyses were performed. The results showed that AGT gene T174M polymorphism might be associated with IS risk in Asians (MM vs. TT: OR = 3.28, 95% CI = 1.79-6.02; recessive model: OR = 0.31, 95% CI = 0.17-0.57).