Phylogeography of Ophioblennius: the Role of Ocean Currents and Geography in Reef Fish Evolution
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UC San Diego UC San Diego Previously Published Works Title Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Permalink https://escholarship.org/uc/item/9z7703dj Journal BMC Evolutionary Biology, 13(1) ISSN 1471-2148 Authors Lin, Hsiu-Chin Hastings, Philip A Publication Date 2013-09-25 DOI http://dx.doi.org/10.1186/1471-2148-13-210 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Lin and Hastings BMC Evolutionary Biology 2013, 13:210 http://www.biomedcentral.com/1471-2148/13/210 RESEARCH ARTICLE Open Access Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Hsiu-Chin Lin1,2* and Philip A Hastings1 Abstract Background: The Blenniiformes comprises six families, 151 genera and nearly 900 species of small teleost fishes closely associated with coastal benthic habitats. They provide an unparalleled opportunity for studying marine biogeography because they include the globally distributed families Tripterygiidae (triplefin blennies) and Blenniidae (combtooth blennies), the temperate Clinidae (kelp blennies), and three largely Neotropical families (Labrisomidae, Chaenopsidae, and Dactyloscopidae). However, interpretation of these distributional patterns has been hindered by largely unresolved inter-familial relationships and the lack of evidence of monophyly of the Labrisomidae. Results: We explored the phylogenetic relationships of the Blenniiformes based on one mitochondrial (COI) and four nuclear (TMO-4C4, RAG1, Rhodopsin, and Histone H3) loci for 150 blenniiform species, and representative outgroups (Gobiesocidae, Opistognathidae and Grammatidae). According to the consensus of Bayesian Inference, Maximum Likelihood, and Maximum Parsimony analyses, the monophyly of the Blenniiformes and the Tripterygiidae, Blenniidae, Clinidae, and Dactyloscopidae is supported. -
The Mean Flow Field of the Tropical Atlantic Ocean
Deep-Sea Research II 46 (1999) 279—303 The mean flow field of the tropical Atlantic Ocean Lothar Stramma*, Friedrich Schott Institut fu( r Meereskunde, an der Universita( t Kiel, Du( sternbrooker Weg 20, 24105 Kiel, Germany Received 26 August 1997; received in revised form 31 July 1998 Abstract The mean horizontal flow field of the tropical Atlantic Ocean is described between 20°N and 20°S from observations and literature results for three layers of the upper ocean, Tropical Surface Water, Central Water, and Antarctic Intermediate Water. Compared to the subtropical gyres the tropical circulation shows several zonal current and countercurrent bands of smaller meridional and vertical extent. The wind-driven Ekman layer in the upper tens of meters of the ocean masks at some places the flow structure of the Tropical Surface Water layer as is the case for the Angola Gyre in the eastern tropical South Atlantic. Although there are regions with a strong seasonal cycle of the Tropical Surface Water circulation, such as the North Equatorial Countercurrent, large regions of the tropics do not show a significant seasonal cycle. In the Central Water layer below, the eastward North and South Equatorial undercurrents appear imbedded in the westward-flowing South Equatorial Current. The Antarcic Intermediate Water layer contains several zonal current bands south of 3°N, but only weak flow exists north of 3°N. The sparse available data suggest that the Equatorial Intermediate Current as well as the Southern and Northern Intermediate Countercurrents extend zonally across the entire equatorial basin. Due to the convergence of northern and southern water masses, the western tropical Atlantic north of the equator is an important site for the mixture of water masses, but more work is needed to better understand the role of the various zonal under- and countercur- rents in cross-equatorial water mass transfer. -
Fronts in the World Ocean's Large Marine Ecosystems. ICES CM 2007
- 1 - This paper can be freely cited without prior reference to the authors International Council ICES CM 2007/D:21 for the Exploration Theme Session D: Comparative Marine Ecosystem of the Sea (ICES) Structure and Function: Descriptors and Characteristics Fronts in the World Ocean’s Large Marine Ecosystems Igor M. Belkin and Peter C. Cornillon Abstract. Oceanic fronts shape marine ecosystems; therefore front mapping and characterization is one of the most important aspects of physical oceanography. Here we report on the first effort to map and describe all major fronts in the World Ocean’s Large Marine Ecosystems (LMEs). Apart from a geographical review, these fronts are classified according to their origin and physical mechanisms that maintain them. This first-ever zero-order pattern of the LME fronts is based on a unique global frontal data base assembled at the University of Rhode Island. Thermal fronts were automatically derived from 12 years (1985-1996) of twice-daily satellite 9-km resolution global AVHRR SST fields with the Cayula-Cornillon front detection algorithm. These frontal maps serve as guidance in using hydrographic data to explore subsurface thermohaline fronts, whose surface thermal signatures have been mapped from space. Our most recent study of chlorophyll fronts in the Northwest Atlantic from high-resolution 1-km data (Belkin and O’Reilly, 2007) revealed a close spatial association between chlorophyll fronts and SST fronts, suggesting causative links between these two types of fronts. Keywords: Fronts; Large Marine Ecosystems; World Ocean; sea surface temperature. Igor M. Belkin: Graduate School of Oceanography, University of Rhode Island, 215 South Ferry Road, Narragansett, Rhode Island 02882, USA [tel.: +1 401 874 6533, fax: +1 874 6728, email: [email protected]]. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
The Morphology and Evolution of Tooth Replacement in the Combtooth Blennies
The morphology and evolution of tooth replacement in the combtooth blennies (Ovalentaria: Blenniidae) A THESIS SUBMITTED TO THE FACULTY OF THE UNIVERSITY OF MINNESOTA BY Keiffer Logan Williams IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE Andrew M. Simons July 2020 ©Keiffer Logan Williams 2020 i ACKNOWLEDGEMENTS I thank my adviser, Andrew Simons, for mentoring me as a student in his lab. His mentorship, kindness, and thoughtful feedback/advice on my writing and research ideas have pushed me to become a more organized and disciplined thinker. I also like to thank my committee: Sharon Jansa, David Fox, and Kory Evans for feedback on my thesis and during committee meetings. An additional thank you to Kory, for taking me under his wing on the #backdattwrasseup project. Thanks to current and past members of the Simons lab/office space: Josh Egan, Sean Keogh, Tyler Imfeld, and Peter Hundt. I’ve enjoyed the thoughtful discussions, feedback on my writing, and happy hours over the past several years. Thanks also to the undergraduate workers in the Simons lab who assisted with various aspects of my work: Andrew Ching and Edward Hicks for helping with histology, and Alex Franzen and Claire Rude for making my terms as curatorial assistant all the easier. In addition, thank you to Kate Bemis and Karly Cohen for conducting a workshop on histology to collect data for this research, and for thoughtful conversations and ideas relating to this thesis. Thanks also to the University of Guam and Laurie Raymundo for hosting me as a student to conduct fieldwork for this research. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Northwest African Upwelling Scenario
OCEANOLOGICA ACTA ⋅ VOL. 24 – Supplement Northwest African upwelling scenario Eberhard HAGEN* Baltic Sea Research Institute, Seestrasse 15, 18119 Warnemuende, Germany Received 24 December 1999; revised 15 May 2000; accepted 16 May 2000 Abstract − Observations, hypotheses and derived scenarios are discussed for the Northwest-African coastal upwelling area. The process of coastal upwelling is considered to be composed of a climatic steady-state part and fluctuations acting on different spatial and temporal scales. Attention is focused on disturbances acting globally on the inter-annual time-scale. El Niño-like changes occur in the system of trade winds and modify the equatorial regime of currents as well as the coastal upwelling regimes on both flanks of the Inter-tropical Convergence Zone. There is an opposite thermal response in near-surface layers along the zonal coast in the Gulf of Guinea and along the meridional coast off NW-Africa. Off the continental slope of Senegal and Mauritania, the poleward undercurrent is linked with the system of eastward flowing equatorial undercurrents via the transport of South Atlantic Central Water (SACW) around the eastern flank of the Guinea Dome. The upwelling undercurrent partly feeds its SACW properties into the belt of coastal upwelling and contributes significantly to the biological productivity during ‘normal’ and ‘abnormal’ upwelling years. Future investigations should focus on changes in the time-scale of decades. © 2001 Ifremer/CNRS/IRD/Éditions scientifiques et médicales Elsevier SAS Résumé − Upwelling au nord-ouest de l‘Afrique. La zone d’upwelling située au nord-ouest des côtes africaines est étudiée dans le cadre d‘une discussion portant sur les observations, les hypothèses et les scénarios qui en dérivent. -
Mapping Climatological Seasonal Variations of Surface Currents in the Tropical Atlantic Using Ship Drifts
JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 91, NO. C9, PAGES 10,537-10,550, SEPTEMBER 15, 1986 Mapping Climatological Seasonal Variations of Surface Currents in the Tropical Atlantic Using Ship Drifts PHILIP L. RICHARDSON AND DAVID WALSH Woods Hole Oceanographic Institution, Woods Hole, Massachusetts The seasonal variability of current velocities in the tropical Atlantic was studied by grouping ship drift velocity observations into 2ø x 5ø boxes and calculating monthly mean velocity values. These values were used to calculate and map the annual mean velocity, the seasonal variation about the mean, the annual and semiannual harmonics, and the first two empirical orthogonal functions (EOFs). The seasonal variation is primarily zonal in the equatorial band and in the North Equatorial Countercurrent (NECC) and primarily alongshore near the coast of South America. Maxima of seasonal variation of 23 cm/s are centered in the NECC near 6øN, 42.5øW and in the Gulf of Guinea near 2øN, 7.5øW. Most (-80%) of the variance in the NECC and along the western boundary of the area studied has an annual period; most of the variance along the equator in the mid-Atlantic has a semiannual period. Over the whole region, 49% of the seasonalvariance is explained by the annual harmonic, and 69% is explained by a combination of the annual and semiannual harmonics. The second EOF contains 29% of the variance of the data set and shows a simultaneousspeeding (slowing) of the major equatorial currents (the South Equatorial Current (SEC), the North Brazil Current, the NECC, and the Guinea Current) along their principal axes of variation with a concurrent slowing (speeding) of the Guyana Current and the Brazil Current. -
Concentración Y Tiempo Máximo De Exposición De Juveniles De Pargo
State of research of the Osteichthyes fish related to coral reefs in the Honduran Caribbean with catalogued records Estado del conocimiento de los peces osteíctios asociados a los arrecifes de coral en el Caribe de Honduras, con registros catalogados Anarda Isabel Salgado Ordoñez1, Julio Enrique Mérida Colindres1* & Gustavo Adolfo Cruz1 ABSTRACT Research on Honduran coral reef fish has been isolated and scattered. A list of fish species related to coral reefs was consolidated to establish a compiled database with updated taxonomy. The study was conducted between October 2017 and December 2018. Using primary and secondary sources, all potential species in the Western Atlantic were considered, and their actual presence was confirmed using catalogued records published in peer-reviewed journals that included Honduras. In addition, the specimens kept in the Museum of Natural History of Universidad Nacional Autónoma de Honduras were added. Once the list was consolidated, the taxonomic status of each species was updated based on recent literature. A total of 159 species and 76 genera were registered in 32 families. The family with the most species was Labrisomidae with 27 species (17%). Five families had more than five 5 genera registered, while four 4 were represented by more than 16 species, which is equivalent to 42% genera and 51% species. Gobiidae was represented by 10 genera (13%) and 21 species (13%), of which two 2 were endemic: Tigrigobius rubrigenis and Elacatinus lobeli. In turn, Grammatidae was represented by one endemic species Lipogramma idabeli (1.8%). The species Diodon holocanthus and Sphoeroides testudineus represent the first catalogued records for Honduras. -
Fish Reproductive-Energy Output Increases Disproportionately with Body Size
ORE Open Research Exeter TITLE Fish reproductive-energy output increases disproportionately with body size AUTHORS Barneche, DR; Robertson, DR; White, CR; et al. JOURNAL Science DEPOSITED IN ORE 05 March 2019 This version available at http://hdl.handle.net/10871/36268 COPYRIGHT AND REUSE Open Research Exeter makes this work available in accordance with publisher policies. A NOTE ON VERSIONS The version presented here may differ from the published version. If citing, you are advised to consult the published version for pagination, volume/issue and date of publication Fish reproductive-energy output increases disproportionately with body size Diego R. Barneche1,§, D. Ross Robertson2, Craig R. White1, Dustin J. Marshall1 1Centre for Geometric Biology / School of Biological Sciences, Monash University, Clayton Vic. 3800, Australia 2Smithsonian Tropical Research Institute, Balboa, Panama §School of Life and Environmental Sciences, The University of Sydney, Sydney NSW 2006, Australia Keywords: body size, ectotherms, life-history theory, geometric biology Correspondence to: D.R.B.; Email: [email protected]; Phone: +61 (2) 9351 2779; Ad- dress: School of Life and Environmental Sciences, The University of Sydney, Sydney NSW 2006, Australia. Body size determines total reproductive-energy output. Most theories assume repro- ductive output is a fixed proportion of size but formal macroecological tests are lacking. Management based on that assumption risks underestimating the contribution of larger mothers to replenishment, hindering sustainable harvesting. We test this assumption in marine fishes with a phylogenetically controlled meta-analysis of the intra-specific mass scaling of reproductive-energy output. We show that larger mothers reproduce disproportionately more than smaller mothers, not only via fecundity, but also total reproductive-energy. -
Global Ocean Surface Velocities from Drifters: Mean, Variance, El Nino–Southern~ Oscillation Response, and Seasonal Cycle Rick Lumpkin1 and Gregory C
JOURNAL OF GEOPHYSICAL RESEARCH: OCEANS, VOL. 118, 2992–3006, doi:10.1002/jgrc.20210, 2013 Global ocean surface velocities from drifters: Mean, variance, El Nino–Southern~ Oscillation response, and seasonal cycle Rick Lumpkin1 and Gregory C. Johnson2 Received 24 September 2012; revised 18 April 2013; accepted 19 April 2013; published 14 June 2013. [1] Global near-surface currents are calculated from satellite-tracked drogued drifter velocities on a 0.5 Â 0.5 latitude-longitude grid using a new methodology. Data used at each grid point lie within a centered bin of set area with a shape defined by the variance ellipse of current fluctuations within that bin. The time-mean current, its annual harmonic, semiannual harmonic, correlation with the Southern Oscillation Index (SOI), spatial gradients, and residuals are estimated along with formal error bars for each component. The time-mean field resolves the major surface current systems of the world. The magnitude of the variance reveals enhanced eddy kinetic energy in the western boundary current systems, in equatorial regions, and along the Antarctic Circumpolar Current, as well as three large ‘‘eddy deserts,’’ two in the Pacific and one in the Atlantic. The SOI component is largest in the western and central tropical Pacific, but can also be seen in the Indian Ocean. Seasonal variations reveal details such as the gyre-scale shifts in the convergence centers of the subtropical gyres, and the seasonal evolution of tropical currents and eddies in the western tropical Pacific Ocean. The results of this study are available as a monthly climatology. Citation: Lumpkin, R., and G. -
Validation of the Synonymy of the Teleost Blenniid Fish Species
Zootaxa 4072 (2): 171–184 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4072.2.2 http://zoobank.org/urn:lsid:zoobank.org:pub:8AC3AF86-10AA-4F57-A86D-3E8BA4F26EE5 Validation of the synonymy of the teleost blenniid fish species Salarias phantasticus Boulenger 1897 and Salarias anomalus Regan 1905 with Ecsenius pulcher (Murray 1887) based on DNA barcoding and morphology GILAN ATTARAN-FARIMANI1, SANAZ ESTEKANI2, VICTOR G. SPRINGER3, OLIVER CRIMMEN4, G. DAVID JOHNSON3 & CAROLE C. BALDWIN3,5 1Chabahar Maritime University, Faculty of Marine Science, Chabahar, Iran 2MSc student, Chabahar Maritime University, Faculty of Marine Science, Chabahar, Iran 3National Museum of Natural History, Smithsonian Institution 4Natural History Museum, London 5Corresponding author. E-mail: [email protected] Abstract As currently recognized, Ecsenius pulcher includes Salarias pulcher (type material has a banded color pattern), S. anom- alus (non-banded), and S. phantasticus (banded). The color patterns are not sex linked, and no other morphological fea- tures apparently distinguish the three nominal species. The recent collection of banded and non-banded specimens of Ecsenius pulcher from Iran has provided the first tissue samples for genetic analyses. Here we review the taxonomic his- tory of E. pulcher and its included synonyms and genetically analyze tissue samples of both color patterns. Salarias anom- alus is retained as a synonym of E. pulcher because DNA barcode data suggest that they represent banded and non-banded color morphs of a single species. Furthermore, the large size of the largest type specimen of S.