Genetics: Published Articles Ahead of Print, published on September 2, 2005 as 10.1534/genetics.105.046193 Signatures of reproductive isolation in patterns of single nucleotide diversity across inbred strains of mice Bret A. Payseur1 and Hopi E. Hoekstra2 1Department of Medical Genetics University of Wisconsin Madison, WI 53706 Email:
[email protected] 2Section of Ecology, Behavior and Evolution Division of Biological Sciences University of California, San Diego La Jolla, CA 92093 email:
[email protected] Corresponding author: Bret A. Payseur Department of Medical Genetics University of Wisconsin Madison, WI 53706 Fax: 608-262-2976 Email:
[email protected] Running head: Reproductive isolation in Mus ABSTRACT Reproductive isolation is often caused by the disruption of genic interactions that evolve in geographically separate populations. Identifying the genomic regions and genes involved in these interactions, known as “Dobzhansky-Muller incompatibilities”, can be challenging, but is facilitated by the wealth of genetic markers now available in model systems. In recent years, the complete genome sequence and thousands of single nucleotide polymorphisms (SNPs) from laboratory mice, which are largely genetic hybrids between Mus musculus and Mus domesticus, have become available. Here, we use these resources to locate genomic regions that may underlie reproductive isolation between these two species. Using genotypes from 332 SNPs that differ between wild- derived strains of M. musculus and M. domesticus, we identified several physically unlinked SNP pairs that show exceptional gametic disequilibrium across the lab strains. Conspecific alleles were associated in a disproportionate number of these cases, consistent with the action of natural selection against hybrid gene combinations. As predicted by the Dobzhansky-Muller model, this bias was differentially attributable to locus pairs for which one hybrid genotype was missing.