Networkx: Network Analysis with Python
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Sagemath and Sagemathcloud
Viviane Pons Ma^ıtrede conf´erence,Universit´eParis-Sud Orsay [email protected] { @PyViv SageMath and SageMathCloud Introduction SageMath SageMath is a free open source mathematics software I Created in 2005 by William Stein. I http://www.sagemath.org/ I Mission: Creating a viable free open source alternative to Magma, Maple, Mathematica and Matlab. Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 2 / 7 SageMath Source and language I the main language of Sage is python (but there are many other source languages: cython, C, C++, fortran) I the source is distributed under the GPL licence. Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 3 / 7 SageMath Sage and libraries One of the original purpose of Sage was to put together the many existent open source mathematics software programs: Atlas, GAP, GMP, Linbox, Maxima, MPFR, PARI/GP, NetworkX, NTL, Numpy/Scipy, Singular, Symmetrica,... Sage is all-inclusive: it installs all those libraries and gives you a common python-based interface to work on them. On top of it is the python / cython Sage library it-self. Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 4 / 7 SageMath Sage and libraries I You can use a library explicitly: sage: n = gap(20062006) sage: type(n) <c l a s s 'sage. interfaces .gap.GapElement'> sage: n.Factors() [ 2, 17, 59, 73, 137 ] I But also, many of Sage computation are done through those libraries without necessarily telling you: sage: G = PermutationGroup([[(1,2,3),(4,5)],[(3,4)]]) sage : G . g a p () Group( [ (3,4), (1,2,3)(4,5) ] ) Viviane Pons (U-PSud) SageMath and SageMathCloud October 19, 2016 5 / 7 SageMath Development model Development model I Sage is developed by researchers for researchers: the original philosophy is to develop what you need for your research and share it with the community. -
Networkx Tutorial
5.03.2020 tutorial NetworkX tutorial Source: https://github.com/networkx/notebooks (https://github.com/networkx/notebooks) Minor corrections: JS, 27.02.2019 Creating a graph Create an empty graph with no nodes and no edges. In [1]: import networkx as nx In [2]: G = nx.Graph() By definition, a Graph is a collection of nodes (vertices) along with identified pairs of nodes (called edges, links, etc). In NetworkX, nodes can be any hashable object e.g. a text string, an image, an XML object, another Graph, a customized node object, etc. (Note: Python's None object should not be used as a node as it determines whether optional function arguments have been assigned in many functions.) Nodes The graph G can be grown in several ways. NetworkX includes many graph generator functions and facilities to read and write graphs in many formats. To get started though we'll look at simple manipulations. You can add one node at a time, In [3]: G.add_node(1) add a list of nodes, In [4]: G.add_nodes_from([2, 3]) or add any nbunch of nodes. An nbunch is any iterable container of nodes that is not itself a node in the graph. (e.g. a list, set, graph, file, etc..) In [5]: H = nx.path_graph(10) file:///home/szwabin/Dropbox/Praca/Zajecia/Diffusion/Lectures/1_intro/networkx_tutorial/tutorial.html 1/18 5.03.2020 tutorial In [6]: G.add_nodes_from(H) Note that G now contains the nodes of H as nodes of G. In contrast, you could use the graph H as a node in G. -
Beta Current Flow Centrality for Weighted Networks Konstantin Avrachenkov, Vladimir Mazalov, Bulat Tsynguev
Beta Current Flow Centrality for Weighted Networks Konstantin Avrachenkov, Vladimir Mazalov, Bulat Tsynguev To cite this version: Konstantin Avrachenkov, Vladimir Mazalov, Bulat Tsynguev. Beta Current Flow Centrality for Weighted Networks. 4th International Conference on Computational Social Networks (CSoNet 2015), Aug 2015, Beijing, China. pp.216-227, 10.1007/978-3-319-21786-4_19. hal-01258658 HAL Id: hal-01258658 https://hal.inria.fr/hal-01258658 Submitted on 19 Jan 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Beta Current Flow Centrality for Weighted Networks Konstantin E. Avrachenkov1, Vladimir V. Mazalov2, Bulat T. Tsynguev3 1 INRIA, 2004 Route des Lucioles, Sophia-Antipolis, France [email protected] 2 Institute of Applied Mathematical Research, Karelian Research Center, Russian Academy of Sciences, 11, Pushkinskaya st., Petrozavodsk, Russia, 185910 [email protected] 3 Transbaikal State University, 30, Aleksandro-Zavodskaya st., Chita, Russia, 672039 [email protected] Abstract. Betweenness centrality is one of the basic concepts in the analysis of social networks. Initial definition for the betweenness of a node in a graph is based on the fraction of the number of geodesics (shortest paths) between any two nodes that given node lies on, to the total number of the shortest paths connecting these nodes. -
Networkx: Network Analysis with Python
NetworkX: Network Analysis with Python Salvatore Scellato Full tutorial presented at the XXX SunBelt Conference “NetworkX introduction: Hacking social networks using the Python programming language” by Aric Hagberg & Drew Conway Outline 1. Introduction to NetworkX 2. Getting started with Python and NetworkX 3. Basic network analysis 4. Writing your own code 5. You are ready for your project! 1. Introduction to NetworkX. Introduction to NetworkX - network analysis Vast amounts of network data are being generated and collected • Sociology: web pages, mobile phones, social networks • Technology: Internet routers, vehicular flows, power grids How can we analyze this networks? Introduction to NetworkX - Python awesomeness Introduction to NetworkX “Python package for the creation, manipulation and study of the structure, dynamics and functions of complex networks.” • Data structures for representing many types of networks, or graphs • Nodes can be any (hashable) Python object, edges can contain arbitrary data • Flexibility ideal for representing networks found in many different fields • Easy to install on multiple platforms • Online up-to-date documentation • First public release in April 2005 Introduction to NetworkX - design requirements • Tool to study the structure and dynamics of social, biological, and infrastructure networks • Ease-of-use and rapid development in a collaborative, multidisciplinary environment • Easy to learn, easy to teach • Open-source tool base that can easily grow in a multidisciplinary environment with non-expert users -
General Approach to Line Graphs of Graphs 1
DEMONSTRATIO MATHEMATICA Vol. XVII! No 2 1985 Antoni Marczyk, Zdzislaw Skupien GENERAL APPROACH TO LINE GRAPHS OF GRAPHS 1. Introduction A unified approach to the notion of a line graph of general graphs is adopted and proofs of theorems announced in [6] are presented. Those theorems characterize five different types of line graphs. Both Krausz-type and forbidden induced sub- graph characterizations are provided. So far other authors introduced and dealt with single spe- cial notions of a line graph of graphs possibly belonging to a special subclass of graphs. In particular, the notion of a simple line graph of a simple graph is implied by a paper of Whitney (1932). Since then it has been repeatedly introduc- ed, rediscovered and generalized by many authors, among them are Krausz (1943), Izbicki (1960$ a special line graph of a general graph), Sabidussi (1961) a simple line graph of a loop-free graph), Menon (1967} adjoint graph of a general graph) and Schwartz (1969; interchange graph which coincides with our line graph defined below). In this paper we follow another way, originated in our previous work [6]. Namely, we distinguish special subclasses of general graphs and consider five different types of line graphs each of which is defined in a natural way. Note that a similar approach to the notion of a line graph of hypergraphs can be adopted. We consider here the following line graphsi line graphs, loop-free line graphs, simple line graphs, as well as augmented line graphs and augmented loop-free line graphs. - 447 - 2 A. Marczyk, Z. -
Graph Database Fundamental Services
Bachelor Project Czech Technical University in Prague Faculty of Electrical Engineering F3 Department of Cybernetics Graph Database Fundamental Services Tomáš Roun Supervisor: RNDr. Marko Genyk-Berezovskyj Field of study: Open Informatics Subfield: Computer and Informatic Science May 2018 ii Acknowledgements Declaration I would like to thank my advisor RNDr. I declare that the presented work was de- Marko Genyk-Berezovskyj for his guid- veloped independently and that I have ance and advice. I would also like to thank listed all sources of information used Sergej Kurbanov and Herbert Ullrich for within it in accordance with the methodi- their help and contributions to the project. cal instructions for observing the ethical Special thanks go to my family for their principles in the preparation of university never-ending support. theses. Prague, date ............................ ........................................... signature iii Abstract Abstrakt The goal of this thesis is to provide an Cílem této práce je vyvinout webovou easy-to-use web service offering a database službu nabízející databázi neorientova- of undirected graphs that can be searched ných grafů, kterou bude možno efektivně based on the graph properties. In addi- prohledávat na základě vlastností grafů. tion, it should also allow to compute prop- Tato služba zároveň umožní vypočítávat erties of user-supplied graphs with the grafové vlastnosti pro grafy zadané uži- help graph libraries and generate graph vatelem s pomocí grafových knihoven a images. Last but not least, we implement zobrazovat obrázky grafů. V neposlední a system that allows bulk adding of new řadě je také cílem navrhnout systém na graphs to the database and computing hromadné přidávání grafů do databáze a their properties. -
Gephi Tools for Network Analysis and Visualization
Frontiers of Network Science Fall 2018 Class 8: Introduction to Gephi Tools for network analysis and visualization Boleslaw Szymanski CLASS PLAN Main Topics • Overview of tools for network analysis and visualization • Installing and using Gephi • Gephi hands-on labs Frontiers of Network Science: Introduction to Gephi 2018 2 TOOLS OVERVIEW (LISTED ALPHABETICALLY) Tools for network analysis and visualization • Computing model and interface – Desktop GUI applications – API/code libraries, Web services – Web GUI front-ends (cloud, distributed, HPC) • Extensibility model – Only by the original developers – By other users/developers (add-ins, modules, additional packages, etc.) • Source availability model – Open-source – Closed-source • Business model – Free of charge – Commercial Frontiers of Network Science: Introduction to Gephi 2018 3 TOOLS CINET CyberInfrastructure for NETwork science • Accessed via a Web-based portal (http://cinet.vbi.vt.edu/granite/granite.html) • Supported by grants, no charge for end users • Aims to provide researchers, analysts, and educators interested in Network Science with an easy-to-use cyber-environment that is accessible from their desktop and integrates into their daily work • Users can contribute new networks, data, algorithms, hardware, and research results • Primarily for research, teaching, and collaboration • No programming experience is required Frontiers of Network Science: Introduction to Gephi 2018 4 TOOLS Cytoscape Network Data Integration, Analysis, and Visualization • A standalone GUI application -
Networkx Reference Release 1.9.1
NetworkX Reference Release 1.9.1 Aric Hagberg, Dan Schult, Pieter Swart September 20, 2014 CONTENTS 1 Overview 1 1.1 Who uses NetworkX?..........................................1 1.2 Goals...................................................1 1.3 The Python programming language...................................1 1.4 Free software...............................................2 1.5 History..................................................2 2 Introduction 3 2.1 NetworkX Basics.............................................3 2.2 Nodes and Edges.............................................4 3 Graph types 9 3.1 Which graph class should I use?.....................................9 3.2 Basic graph types.............................................9 4 Algorithms 127 4.1 Approximation.............................................. 127 4.2 Assortativity............................................... 132 4.3 Bipartite................................................. 141 4.4 Blockmodeling.............................................. 161 4.5 Boundary................................................. 162 4.6 Centrality................................................. 163 4.7 Chordal.................................................. 184 4.8 Clique.................................................. 187 4.9 Clustering................................................ 190 4.10 Communities............................................... 193 4.11 Components............................................... 194 4.12 Connectivity.............................................. -
Gephi-Poster-Sunbelt-July10.Pdf
The Open Graph Viz Platform Gephi is a new open-source network visualization platform. It aims to create a sustainable software and technical Download Gephi at ecosystem, driven by a large international open-source community, who shares common interests in networks and http://gephi.org complex systems. The rendering engine can handle networks larger than 100K elements and guarantees responsiveness. Designed to make data navigation and manipulation easy, it aims to fulll the complete chain from data importing to aesthetics renements and interaction. Particular focus is made on the software usability and interoperability with other tools. A lot of eorts are made to facilitate the community growth, by providing tutorials, plug-ins development documentation, support and student projects. Current developments include Dynamic Network Analysis (DNA) and Goals spigots (Emails, Twitter, Facebook …) import. Create the Photoshop of network visualization, by combining a rich set of Gephi aims at being built-in features and a sustainable, open to friendly user interface. many kind of users, and creating a large, Design a modular and international and extensible software diverse open-source architecture, facilitate plug-ins development, community reuse and mashup. Build a large, international Features Highlight and diverse open-source community. Community Join the network, participate designing the roadmap, get help to quickly code plug-ins or simply share your ideas. Select, move, paint, resize, connect, group Just with the mouse Export in SVG/PDF to include your infographics Metrics Architecture * Betweenness, Eigenvector, Closeness The modular architecture allows developers adding and extending features * Eccentricity with ease by developing plug-ins. Gephi can also be used as Java library in * Diameter, Average Shortest Path other applications and build for instance, a layout server. -
Plantuml Language Reference Guide (Version 1.2021.2)
Drawing UML with PlantUML PlantUML Language Reference Guide (Version 1.2021.2) PlantUML is a component that allows to quickly write : • Sequence diagram • Usecase diagram • Class diagram • Object diagram • Activity diagram • Component diagram • Deployment diagram • State diagram • Timing diagram The following non-UML diagrams are also supported: • JSON Data • YAML Data • Network diagram (nwdiag) • Wireframe graphical interface • Archimate diagram • Specification and Description Language (SDL) • Ditaa diagram • Gantt diagram • MindMap diagram • Work Breakdown Structure diagram • Mathematic with AsciiMath or JLaTeXMath notation • Entity Relationship diagram Diagrams are defined using a simple and intuitive language. 1 SEQUENCE DIAGRAM 1 Sequence Diagram 1.1 Basic examples The sequence -> is used to draw a message between two participants. Participants do not have to be explicitly declared. To have a dotted arrow, you use --> It is also possible to use <- and <--. That does not change the drawing, but may improve readability. Note that this is only true for sequence diagrams, rules are different for the other diagrams. @startuml Alice -> Bob: Authentication Request Bob --> Alice: Authentication Response Alice -> Bob: Another authentication Request Alice <-- Bob: Another authentication Response @enduml 1.2 Declaring participant If the keyword participant is used to declare a participant, more control on that participant is possible. The order of declaration will be the (default) order of display. Using these other keywords to declare participants -
P2k-Factorization of Complete Bipartite Multigraphs
P2k-factorization of complete bipartite multigraphs Beiliang Du Department of Mathematics Suzhou University Suzhou 215006 People's Republic of China Abstract We show that a necessary and sufficient condition for the existence of a P2k-factorization of the complete bipartite- multigraph )"Km,n is m = n == 0 (mod k(2k - l)/d), where d = gcd()", 2k - 1). 1. Introduction Let Km,n be the complete bipartite graph with two partite sets having m and n vertices respectively. The graph )"Km,n is the disjoint union of ).. graphs each isomorphic to Km,n' A subgraph F of )"Km,n is called a spanning subgraph of )"Km,n if F contains all the vertices of )"Km,n' It is clear that a graph with no isolated vertices is uniquely determined by the set of its edges. So in this paper, we consider a graph with no isolated vertices to be a set of 2-element subsets of its vertices. For positive integer k, a path on k vertices is denoted by Pk. A Pk-factor of )'Km,n is a spanning subgraph F of )"Km,n such that every component of F is a Pk and every pair of Pk's have no vertex in common. A Pk-factorization of )"Km,n is a set of edge-disjoint Pk-factors of )"Km,n which is a partition of the set of edges of )'Km,n' (In paper [4] a Pk-factorization of )"Km,n is defined to be a resolvable (m, n, k,)..) bipartite Pk design.) The multigraph )"Km,n is called Ph-factorable whenever it has a Ph-factorization. -
Social Network Analysis and Information Propagation: a Case Study Using Flickr and Youtube Networks
International Journal of Future Computer and Communication, Vol. 2, No. 3, June 2013 Social Network Analysis and Information Propagation: A Case Study Using Flickr and YouTube Networks Samir Akrouf, Laifa Meriem, Belayadi Yahia, and Mouhoub Nasser Eddine, Member, IACSIT 1 makes decisions based on what other people do because their Abstract—Social media and Social Network Analysis (SNA) decisions may reflect information that they have and he or acquired a huge popularity and represent one of the most she does not. This concept is called ″herding″ or ″information important social and computer science phenomena of recent cascades″. Therefore, analyzing the flow of information on years. One of the most studied problems in this research area is influence and information propagation. The aim of this paper is social media and predicting users’ influence in a network to analyze the information diffusion process and predict the became so important to make various kinds of advantages influence (represented by the rate of infected nodes at the end of and decisions. In [2]-[3], the marketing strategies were the diffusion process) of an initial set of nodes in two networks: enhanced with a word-of-mouth approach using probabilistic Flickr user’s contacts and YouTube videos users commenting models of interactions to choose the best viral marketing plan. these videos. These networks are dissimilar in their structure Some other researchers focused on information diffusion in (size, type, diameter, density, components), and the type of the relationships (explicit relationship represented by the contacts certain special cases. Given an example, the study of Sadikov links, and implicit relationship created by commenting on et.al [6], where they addressed the problem of missing data in videos), they are extracted using NodeXL tool.