Generalised and Conditional Inactivation of Pex Genes in Mice ⁎ Myriam Baes A, , Paul P
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Ophthalmic Manifestations of Heimler Syndrome Due to PEX6 Mutations
Thomas Jefferson University Jefferson Digital Commons Wills Eye Hospital Papers Wills Eye Hospital 5-4-2018 Ophthalmic manifestations of Heimler syndrome due to PEX6 mutations. Nutsuchar Wangtiraumnuay Wills Eye Hospital; Queen Sirikit National Institute of Child Health Waleed Abed Alnabi Wills Eye Hospital Mai Tsukikawa Thomas Jefferson University Avrey Thau Wills Eye Hosptial; Thomas Jefferson University Jenina Capasso Wills Eye Hospital Follow this and additional works at: https://jdc.jefferson.edu/willsfp Part of the Ophthalmology Commons LetSee next us page know for additional how authors access to this document benefits ouy Recommended Citation Wangtiraumnuay, Nutsuchar; Alnabi, Waleed Abed; Tsukikawa, Mai; Thau, Avrey; Capasso, Jenina; Sharony, Reuven; Inglehearn, Chris F.; and Levin, Alex V., "Ophthalmic manifestations of Heimler syndrome due to PEX6 mutations." (2018). Wills Eye Hospital Papers. Paper 83. https://jdc.jefferson.edu/willsfp/83 This Article is brought to you for free and open access by the Jefferson Digital Commons. The Jefferson Digital Commons is a service of Thomas Jefferson University's Center for Teaching and Learning (CTL). The Commons is a showcase for Jefferson books and journals, peer-reviewed scholarly publications, unique historical collections from the University archives, and teaching tools. The Jefferson Digital Commons allows researchers and interested readers anywhere in the world to learn about and keep up to date with Jefferson scholarship. This article has been accepted for inclusion in Wills Eye Hospital Papers by an authorized administrator of the Jefferson Digital Commons. For more information, please contact: [email protected]. Authors Nutsuchar Wangtiraumnuay, Waleed Abed Alnabi, Mai Tsukikawa, Avrey Thau, Jenina Capasso, Reuven Sharony, Chris F. -
The Peroxisomal PTS1-Import Defect of PEX1- Deficient Cells Is Independent of Pexophagy in Saccharomyces Cerevisiae
International Journal of Molecular Sciences Communication The Peroxisomal PTS1-Import Defect of PEX1- Deficient Cells Is Independent of Pexophagy in Saccharomyces cerevisiae Thomas Mastalski, Rebecca Brinkmeier and Harald W. Platta * Biochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, Universitätsstr. 150, 44801 Bochum, Germany; [email protected] (T.M.); [email protected] (R.B.) * Correspondence: [email protected]; Tel.: +49-234-3224-968 Received: 10 January 2020; Accepted: 27 January 2020; Published: 29 January 2020 Abstract: The important physiologic role of peroxisomes is shown by the occurrence of peroxisomal biogenesis disorders (PBDs) in humans. This spectrum of autosomal recessive metabolic disorders is characterized by defective peroxisome assembly and impaired peroxisomal functions. PBDs are caused by mutations in the peroxisomal biogenesis factors, which are required for the correct compartmentalization of peroxisomal matrix enzymes. Recent work from patient cells that contain the Pex1(G843D) point mutant suggested that the inhibition of the lysosome, and therefore the block of pexophagy, was beneficial for peroxisomal function. The resulting working model proposed that Pex1 may not be essential for matrix protein import at all, but rather for the prevention of pexophagy. Thus, the observed matrix protein import defect would not be caused by a lack of Pex1 activity, but rather by enhanced removal of peroxisomal membranes via pexophagy. In the present study, we can show that the specific block of PEX1 deletion-induced pexophagy does not restore peroxisomal matrix protein import or the peroxisomal function in beta-oxidation in yeast. Therefore, we conclude that Pex1 is directly and essentially involved in peroxisomal matrix protein import, and that the PEX1 deletion-induced pexophagy is not responsible for the defect in peroxisomal function. -
Spectrum of PEX1 and PEX6 Variants in Heimler Syndrome
European Journal of Human Genetics (2016) 24, 1565–1571 Official Journal of The European Society of Human Genetics www.nature.com/ejhg ARTICLE Spectrum of PEX1 and PEX6 variants in Heimler syndrome Claire EL Smith1, James A Poulter1, Alex V Levin2,3,4, Jenina E Capasso4, Susan Price5, Tamar Ben-Yosef6, Reuven Sharony7, William G Newman8,9, Roger C Shore10, Steven J Brookes10, Alan J Mighell1,11,12 and Chris F Inglehearn*,1,12 Heimler syndrome (HS) consists of recessively inherited sensorineural hearing loss, amelogenesis imperfecta (AI) and nail abnormalities, with or without visual defects. Recently HS was shown to result from hypomorphic mutations in PEX1 or PEX6,both previously implicated in Zellweger Syndrome Spectrum Disorders (ZSSD). ZSSD are a group of conditions consisting of craniofacial and neurological abnormalities, sensory defects and multi-organ dysfunction. The finding of HS-causing mutations in PEX1 and PEX6 shows that HS represents the mild end of the ZSSD spectrum, though these conditions were previously thought to be distinct nosological entities. Here, we present six further HS families, five with PEX6 variants and one with PEX1 variants, and show the patterns of Pex1, Pex14 and Pex6 immunoreactivity in the mouse retina. While Ratbi et al. found more HS-causing mutations in PEX1 than in PEX6, as is the case for ZSSD, in this cohort PEX6 variants predominate, suggesting both genes play a significant role in HS. The PEX6 variant c.1802G4A, p.(R601Q), reported previously in compound heterozygous state in one HS and three ZSSD cases, was found in compound heterozygous state in three HS families. -
PEX5 Regulates Autophagy Via the Mtorc1-TFEB Axis During Starvation
Eun et al. Experimental & Molecular Medicine (2018) 50:4 DOI 10.1038/s12276-017-0007-8 Experimental & Molecular Medicine ARTICLE Open Access PEX5 regulates autophagy via the mTORC1-TFEB axis during starvation So Young Eun1,JoonNoLee2,In-KooNam2, Zhi-qiang Liu1,Hong-SeobSo 1, Seong-Kyu Choe1 and RaeKil Park2 Abstract Defects in the PEX5 gene impair the import of peroxisomal matrix proteins, leading to nonfunctional peroxisomes and other associated pathological defects such as Zellweger syndrome. Although PEX5 regulates autophagy process in a stress condition, the mechanisms controlling autophagy by PEX5 under nutrient deprivation are largely unknown. Herein, we show a novel function of PEX5 in the regulation of autophagy via Transcription Factor EB (TFEB). Under serum-starved conditions, when PEX5 is depleted, the mammalian target of rapamycin (mTORC1) inhibitor TSC2 is downregulated, which results in increased phosphorylation of the mTORC1 substrates, including 70S6K, S6K, and 4E- BP-1. mTORC1 activation further suppresses the nuclear localization of TFEB, as indicated by decreased mRNA levels of TFEB, LIPA, and LAMP1. Interestingly, peroxisomal mRNA and protein levels are also reduced by TFEB inactivation, indicating that TFEB might control peroxisome biogenesis at a transcriptional level. Conversely, pharmacological inhibition of mTOR resulting from PEX5 depletion during nutrient starvation activates TFEB by promoting nuclear localization of the protein. In addition, mTORC1 inhibition recovers the damaged-peroxisome biogenesis. These data suggest that PEX5 may be a critical regulator of lysosomal gene expression and autophagy through the mTOR-TFEB- autophagy axis under nutrient deprivation. 1234567890():,; 1234567890():,; Introduction Mitochondrial antiviral-signaling protein (MAVS) func- Peroxisome is an essential cellular organelle for per- tions as an antiviral signaling platform to induce the forming various metabolic activities, including oxidation interferon-independent signaling pathways4. -
Impaired Lysosomal Acidification Triggers Iron Deficiency And
RESEARCH ARTICLE Impaired lysosomal acidification triggers iron deficiency and inflammation in vivo King Faisal Yambire1, Christine Rostosky2, Takashi Watanabe3, David Pacheu-Grau1, Sylvia Torres-Odio4, Angela Sanchez-Guerrero1,2, Ola Senderovich5, Esther G Meyron-Holtz5, Ira Milosevic2, Jens Frahm3, A Phillip West4, Nuno Raimundo1* 1Institute of Cellular Biochemistry, University Medical Center Goettingen, Goettingen, Germany; 2European Neuroscience Institute, a Joint Initiative of the Max-Planck Institute and of the University Medical Center Goettingen, Goettingen, Germany; 3Biomedizinische NMR, Max-Planck Institute for Biophysical Chemistry, Goettingen, Germany; 4Department of Microbial Pathogenesis and Immunology, Texas A&M University Health Science Center, Austin, United States; 5Faculty of Biotechnology and Food Engineering, Technion Israel Institute of Technology, Haifa, Israel Abstract Lysosomal acidification is a key feature of healthy cells. Inability to maintain lysosomal acidic pH is associated with aging and neurodegenerative diseases. However, the mechanisms elicited by impaired lysosomal acidification remain poorly understood. We show here that inhibition of lysosomal acidification triggers cellular iron deficiency, which results in impaired mitochondrial function and non-apoptotic cell death. These effects are recovered by supplying iron via a lysosome-independent pathway. Notably, iron deficiency is sufficient to trigger inflammatory signaling in cultured primary neurons. Using a mouse model of impaired lysosomal acidification, we observed a robust iron deficiency response in the brain, verified by in vivo magnetic resonance *For correspondence: imaging. Furthermore, the brains of these mice present a pervasive inflammatory signature [email protected] associated with instability of mitochondrial DNA (mtDNA), both corrected by supplementation of goettingen.de the mice diet with iron. Our results highlight a novel mechanism linking impaired lysosomal Competing interests: The acidification, mitochondrial malfunction and inflammation in vivo. -
Peroxisomal Disorders and Their Mouse Models Point to Essential Roles of Peroxisomes for Retinal Integrity
International Journal of Molecular Sciences Review Peroxisomal Disorders and Their Mouse Models Point to Essential Roles of Peroxisomes for Retinal Integrity Yannick Das, Daniëlle Swinkels and Myriam Baes * Lab of Cell Metabolism, Department of Pharmaceutical and Pharmacological Sciences, KU Leuven, 3000 Leuven, Belgium; [email protected] (Y.D.); [email protected] (D.S.) * Correspondence: [email protected] Abstract: Peroxisomes are multifunctional organelles, well known for their role in cellular lipid homeostasis. Their importance is highlighted by the life-threatening diseases caused by peroxisomal dysfunction. Importantly, most patients suffering from peroxisomal biogenesis disorders, even those with a milder disease course, present with a number of ocular symptoms, including retinopathy. Patients with a selective defect in either peroxisomal α- or β-oxidation or ether lipid synthesis also suffer from vision problems. In this review, we thoroughly discuss the ophthalmological pathology in peroxisomal disorder patients and, where possible, the corresponding animal models, with a special emphasis on the retina. In addition, we attempt to link the observed retinal phenotype to the underlying biochemical alterations. It appears that the retinal pathology is highly variable and the lack of histopathological descriptions in patients hampers the translation of the findings in the mouse models. Furthermore, it becomes clear that there are still large gaps in the current knowledge on the contribution of the different metabolic disturbances to the retinopathy, but branched chain fatty acid accumulation and impaired retinal PUFA homeostasis are likely important factors. Citation: Das, Y.; Swinkels, D.; Baes, Keywords: peroxisome; Zellweger; metabolism; fatty acid; retina M. Peroxisomal Disorders and Their Mouse Models Point to Essential Roles of Peroxisomes for Retinal Integrity. -
Unique Double-Ring Structure of the Peroxisomal Pex1/Pex6 Atpase
Unique double-ring structure of the peroxisomal PNAS PLUS Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy Neil B. Bloka,b,1, Dongyan Tana,b,1, Ray Yu-Ruei Wangc,d,1, Pawel A. Penczeke, David Bakerc,f, Frank DiMaioc, Tom A. Rapoporta,b,2, and Thomas Walza,b,2 aHoward Hughes Medical Institute, Harvard Medical School, Boston, MA 02115; bDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115; cDepartment of Biochemistry, University of Washington, Seattle, WA 98195; dGraduate Program in Biological Physics, Structure and Design, University of Washington, Seattle, WA 98195; eDepartment of Biochemistry and Molecular Biology, The University of Texas Medical School, Houston, TX 77054; and fHoward Hughes Medical Institute, University of Washington, Seattle, WA 98195 Edited by Wah Chiu, Baylor College of Medicine, Houston, TX, and approved June 15, 2015 (received for review January 6, 2015) Members of the AAA family of ATPases assemble into hexameric short succession (3, 8–10). For double-ring ATPases, the co- double rings and perform vital functions, yet their molecular ordination between ATPase subunits is even more complex, as mechanisms remain poorly understood. Here, we report structures there may be communication both within a given ring and be- of the Pex1/Pex6 complex; mutations in these proteins frequently tween the two rings. It seems that generally most of the ATP cause peroxisomal diseases. The structures were determined in the hydrolysis occurs in only one ring. For example, the N-terminal presence of different nucleotides by cryo-electron microscopy. Models ATPase domains of NSF, which form the D1 ring, hydrolyze were generated using a computational approach that combines ATP much more rapidly than the subunits in the D2 ring (11). -
E3 Ubiquitin Ligase SP1 Regulates Peroxisome Biogenesis in Arabidopsis
E3 ubiquitin ligase SP1 regulates peroxisome PNAS PLUS biogenesis in Arabidopsis Ronghui Pana, John Satkovicha, and Jianping Hua,b,1 aDepartment of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824; and bPlant Biology Department, Michigan State University, East Lansing, MI 48824 Edited by Natasha V. Raikhel, Center for Plant Cell Biology, Riverside, CA, and approved September 30, 2016 (received for review August 17, 2016) Peroxisomes are ubiquitous eukaryotic organelles that play pivotal signal type 1) and N-terminal PTS2 sequences, respectively roles in a suite of metabolic processes and often act coordinately (15, 16). In Arabidopsis, PEX5 is also required for PTS2 protein with other organelles, such as chloroplasts and mitochondria. Peroxi- import (16). Two membrane proteins, PEX13 and PEX14, form somes import proteins to the peroxisome matrix by peroxins (PEX the docking site for PEX5 and PEX7 (17, 18). After receptor proteins), but how the function of the PEX proteins is regulated is docking, cargo proteins translocate into the matrix before re- poorly understood. In this study, we identified the Arabidopsis RING ceptors are recycled to the cytosol (19–21). These processes re- (really interesting new gene) type E3 ubiquitin ligase SP1 [suppressor quire the RING (really interesting new gene)-finger peroxins of plastid protein import locus 1 (ppi1) 1] as a peroxisome membrane PEX2,PEX10,andPEX12(22–25), the ATPases PEX1 and protein with a regulatory role in peroxisome protein import. SP1 PEX6 and their membrane tether APEM9 (aberrant peroxisome interacts physically with the two components of the peroxisome morphology 9) and the ubiquitin-conjugating enzyme PEX4 and protein docking complex PEX13–PEX14 and the (RING)-finger per- its membrane anchor PEX22 (26–29). -
2014A Veenhuis Microbial Cell
Microreview www.microbialcell.com De novo peroxisome biogenesis revisited Marten Veenhuis and Ida J. van der Klei* Molecular Cell Biology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, The Netherlands. * Corresponding Author: Ida J. van der Klei, P.O. Box 11103; 9700 CC Groningen, The Netherlands; Tel: +31 50 363 2179/2400; Fax: +31 50 363 2348; E-mail: [email protected] We describe an alternative peroxisome formation made in pex19 cells of both species although the pex19 pathway in yeast pex3 and pex19 cells, which relies on vesicles differed from those present in pex3 cells in that the existence of small peroxisomal remnants that are they contained, besides Pex13, Pex14 and Pex8, also Pex3. present in these cells. This groundbreaking result chal- Pex13 and Pex14 are key components of the matrix protein lenges current models prescribing that peroxisomes receptor docking complex. In the membrane remnants derive de novo from the ER. Our data also has major small amounts of matrix protein were present suggesting implications for the sorting pathway of specific peroxi- that Pex13 and Pex14 were correctly inserted and func- somal membrane proteins (PMPs). We propose a novel tional as receptor docking site. The low matrix content may be explained in that the proteins of the receptor recycling sorting pathway for the PMPs Pex13 and Pex14 that is system (including the RING finger proteins) were not pre- independent of the known Pex3/Pex19 machinery. sent on these structures, thereby preventing recycling of the PTS1 receptor Pex5. Indeed, Pex5 was found associated Peroxisomes are crucial, multifunctional organelles the with the vesicles, whereas other PMPs, e.g. -
Functional Characterization of Peroxisome Biogenic Proteins Pex5 And
bioRxiv preprint doi: https://doi.org/10.1101/366633; this version posted July 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Functional characterization of peroxisome biogenic proteins Pex5 and Pex7 of Drosophila Francesca Di Cara, Richard A. Rachubinski and Andrew J. Simmonds Department of Cell Biology, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Alberta, Canada, T6G 2H7 [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/366633; this version posted July 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT Peroxisomes are ubiquitous membrane-enclosed organelles involved in lipid processing and reactive oxygen detoxification. Mutations in human peroxisome biogenesis genes (Peroxin, PEX) cause progressive developmental disabilities and, in severe cases, early death. PEX5 and PEX7 are receptors that recognize different peroxisomal targeting signals called PTS1 and PTS2, respectively, and traffic proteins to the peroxisomal matrix. We characterized mutants of Drosophila melanogaster Pex5 and Pex7 and found that adult animals are affected in lipid processing. Moreover, Pex5 mutants exhibited severe developmental defects in the embryonic nervous system and muscle, similar to what is observed in humans with Pex5 mutations, while Pex7 fly mutants were weakly affected in brain development, suggesting different roles for Pex7 in fly and human. Of note, although no PTS2-containing protein has been identified in Drosophila, Pex7 from Drosophila can function as a bona fide PTS2 receptor because it can rescue targeting of the PTS2- containing protein Thiolase to peroxisomes in PEX7 mutant human fibroblasts. -
A PEX5 Missense Allele Preferentially Disrupts PTS1 Cargo Import Into Arabidopsis Peroxisomes
Received: 24 July 2018 | Revised: 9 January 2019 | Accepted: 3 March 2019 DOI: 10.1002/pld3.128 ORIGINAL RESEARCH A PEX5 missense allele preferentially disrupts PTS1 cargo import into Arabidopsis peroxisomes Khushali J. Patel* | Yun-Ting Kao* | Roxanna J. Llinas | Bonnie Bartel Department of BioSciences, Rice University, Houston, Texas Abstract The sorting of eukaryotic proteins to various organellar destinations requires recep- Correspondence Bonnie Bartel, Department of BioSciences, tors that recognize cargo protein targeting signals and facilitate transport into the Rice University, Houston, TX. organelle. One such receptor is the peroxin PEX5, which recruits cytosolic cargo Email: [email protected] carrying a peroxisome- targeting signal (PTS) type 1 (PTS1) for delivery into the per- Present addresses oxisomal lumen (matrix). In plants and mammals, PEX5 is also indirectly required for Yun-Ting Kao, Department of Cell Biology and Molecular Genetics, University of peroxisomal import of proteins carrying a PTS2 signal because PEX5 binds the PTS2 Maryland, College Park, Maryland receptor, bringing the associated PTS2 cargo to the peroxisome along with PTS1 Khushali J. Patel, Graduate School of cargo. Despite PEX5 being the PTS1 cargo receptor, previously identified Arabidopsis Biomedical Sciences, Baylor College of Medicine, Houston, Texas pex5 mutants display either impairment of both PTS1 and PTS2 import or defects only in PTS2 import. Here, we report the first Arabidopsis pex5 mutant with an ex- Funding information National Institutes of Health, Grant/Award clusive PTS1 import defect. In addition to markedly diminished GFP- PTS1 import Number: R01GM079177, F31GM125367, and decreased pex5- 2 protein accumulation, this pex5-2 mutant shows typical S10RR026399, P30CA91842, and UL1RR024992; National Science peroxisome- related defects, including inefficient β- oxidation and reduced growth. -
A Novel PEX1 Mutation in a Moroccan Family with Zellweger Spectrum Disorders
OPEN Citation: Human Genome Variation (2017) 4, 17009; doi:10.1038/hgv.2017.9 Official journal of the Japan Society of Human Genetics www.nature.com/hgv DATA REPORT A novel PEX1 mutation in a Moroccan family with Zellweger spectrum disorders Amale Bousfiha1, Amina Bakhchane1, Hicham Charoute1, Zied Riahi2,3, Khalid Snoussi1, Hassan Rouba1, Crystel Bonnet2,3, Christine Petit2,3,4,5 and Abdelhamid Barakat1 Mutations in the PEX1 gene are usually associated with recessive inherited diseases including Zellweger spectrum disorders. In this work, we identified a new pathogenic missense homozygous PEX1 mutation (p.Leu1026Pro, c.3077T4C) in two Moroccan syndromic deaf siblings from consanguineous parents. This variation is located in the P-loop containing nucleoside triphosphate hydrolase of protein domain and probably causes an alteration in the hydrolysis of ATP. Human Genome Variation (2017) 4, 17009; doi:10.1038/hgv.2017.9; published online 13 April 2017 Peroxisomal biogenesis factor 1 (PEX1) gene, located on 7q21.2,1 is deficiency, craniofacial dysmorphism, hearing impairment, the most involved gene associated with Zellweger spectrum vision abnormalities, liver and renal dysfunction, and sometimes disorders (ZSDs) accounting for nearly 70% of Zellweger syndrome epileptic seizures.11,12 (ZS) patients, showing the importance of the ATPase (Pex1p) In this work, a novel homozygous PEX1 mutation, the encoded by this gene in peroxisome function.2 Moreover, this p.Leu1026Pro (c.3077T4C), was identified in two deaf siblings hydrophilic protein plays an