DOCSLIB.ORG

Homo-Protacs for the Chemical Knockdown of Cereblon

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Homo-Protacs for the Chemical Knockdown of Cereblon Homo-PROTACs for the Chemical Knockdown of Cereblon Stefanie Lindner 60th ASH Annual Meeting and Exposition December 1, 2018 San Diego , CA IMiDs modulate substrate specificity of the CRBN E3 ligase Thalidomide Lenalidomide omalidomide IKZF1 Multiple IKZF3 Myeloma CRBN Proteasomal CK1α del(5q) MDS Neo- E3 ubiquitin ligase degradation substrate SALL4 Teratogenicity Ito et al., 2010, Science Krönke et al., 2014 Science Lu et al., 2014, Science Krönke et al., 2015, Nature Donovan et al., 2018, Elife Matyskiela et al., 2018, Nat Chem Biol. Proteolysis Targeting Chimeras (PROTACs) Bifunctional molecules for degradation of proteins of interest (POI) Thalidomide POI Lenalidomide ligand Pomalidomide linker POI IMiD CRBN PROTAC Sakamoto et. al, 2001, PNAS Schneekloth et. al, 2004, J Am Chem Soc. Lu et al., 2015, Chem Biol Winter et al., 2017, Mol Cell. Proteolysis Targeting Chimeras (PROTACs) Bifunctional molecules for degradation of proteins of interest (POI) POI IMiD CRBN Proteasomal PROTAC degradation Sakamoto et. al, 2001, PNAS Schneekloth et. al, 2004, J Am Chem Soc. Lu et al., 2015, Chem Biol Winter et al., 2017, Mol Cell. Homodimeric pomalidomide-based PROTACs Linker (size X) O O O HN O O NH O O HN NH O N N O Homo-bifunctional molecules O O Chemical Formula: C36H40N6O11 Molecular Weight: 732,75 Pomalidomide Pomalidomide Chemically CRBN Pom Pom CRBN induced CRBN knockdown Proteasomal POI = CRBN degradation Homodimeric pomalidomide-based PROTACs corresponding linker substructures No. of linear CRBN IKZF1 Linker linker atoms degradation degradation d multiple myeloma cell line MM1S O O 8 ++ + O O 10 + ++ Compound - 15a15b 15c 15d 15e POM LEN O O 12 + ++ CRBN O O O 13 + ++ IKZF1 O 5 ++ + IKZF3 O O 8 - ++ CUL4A O O 8 - - Tubulin O O 8 + + O O 8 ± + LEN: Lenalidomide POM: Pomalidomide Pomalidomide-based Homo-PROTACs induce degradation of CRBN 15a (24h) 15a (100 nM) MSO POM 10 0.001 0.01 0.1 1 10 (µM) DMSO POM 0.25 0.5 1 3 6 24 (h) CRBN CRBN IKZF1 IKZF1 IKZF3 IKZF3 Tubulin kinetics Tubulin Impact of Homo-PROTAC 15a on the cellular proteome T- based quantitative proteomics in MM1S cell line centration: 100nM bation: 3h Homo-PROTAC 15 vs. DMSO (3h) Pomalidomide vs. DMSO (3h) TMT Ratio Pomalidomide (3h/DMSO) 2 Log Rank Rank CRBN knockdown has no effect on cell proliferation LP-1 RPMI 8226 OCI-AML5 100% 100% 100% 80% 80% 80% (%) 60% 60% 60% cells 40% 40% 40% Viable (%) Viable cells 20% 20% (%) Viable cells 20% 0% 0% 0% 15a (µM) 0 0.1 1.0 10 15a (µM) 0 0.1 1.0 10 15a (µM) 0 0.1 1.0 10 100% 100% 100% 80% 80% 80% (%) 60% 60% 60% cells 40% 40% 40% Viable cells (%) Viable cells (%) Viable cells Viable 20% 20% 20% 0% 0% 0% OM (µM) 0 0.1 1.0 10 POM (µM) 0 0.1 1.0 10 POM (µM) 0 0.1 1.0 10 mpound 15a antagonizes the effects of IMiDs on multiple myeloma cells MM1S 15a (100nM) --++ 120% *** POM (1 µM) -+-+ 100% CRBN 80% 60% IKZF1 40% Viable cells (%) Viable IKZF3 20% Tubulin 0% 15a (µM) - 0.1 - 0.1 POM (µM) - - 1.0 1.0 pre Conclusions IMiD-based Homo-PROTACs induce specific CRBN ubiquitination and degradation Chemical CRBN degradation had no effect on cancer cell proliferation Homo-PROTAC abrogates IMiD effects in multiple myeloma Homodimeric pomalidomide-based compounds may help to: • Identify CRBN‘s endogenous substrates and physiologic function • Investigate the molecular mechanism of IMiDs • Potential clinical application in obesity (Lee et al., 2013, Diabetes) Acknowledgment Gütschow lab Krönke Lab Michael Gütschow Jan Krönke Christian Steinebach Hannes Kehm Simon Köpff Tatjana Meyer Linda Röhner Yuen Lam Dora Ng Broad Institute of MIT and Imke Bauhuf Harvard Stephan Bohl Steven A. Carr Namrata D. Udeshi Deepak Mani.
Load more

Recommended publications
  • DDB1 Targets Chk1 to the Cul4 E3 Ligase Complex in Normal Cycling Cells and in Cells Experiencing Replication Stress
    Published OnlineFirst March 10, 2009; DOI: 10.1158/0008-5472.CAN-08-3382 Research Article DDB1 Targets Chk1 to the Cul4 E3 Ligase Complex in Normal Cycling Cells and in Cells Experiencing Replication Stress Van Leung-Pineda,1 Jiwon Huh,1 and Helen Piwnica-Worms1,2,3 Departments of 1Cell Biology and Physiology and 2Internal Medicine and 3Howard Hughes Medical Institute, Washington University School of Medicine, St. Louis, Missouri Abstract protein FANCE (8, 10–12). Chk1 carries out its functions both in the The Chk1 protein kinase preserves genome integrity in normal nucleus and at the centrosome (13). Drugs that block Chk1 kinase proliferating cells and in cells experiencing replicative and activity or enhance its proteolysis by interfering with binding to genotoxic stress. Chk1 is currently being targeted in antican- heat shock protein 90 (HSP90) are currently being tested as cer regimens. Here, we identify damaged DNA-binding protein anticancer agents (14–17). 1 (DDB1) as a novel Chk1-interacting protein. DDB1 is part of Chk1 is regulated by reversible phosphorylation and by an E3 ligase complex that includes the cullin proteins Cul4A ubiquitin-mediated proteolysis. Under periods of replicative stress, and Cul4B. We report that Cul4A/DDB1 negatively regulates the ATRIP/ATR module binds to single-stranded DNA and, Chk1 stability in vivo. Chk1 associates with Cul4A/DDB1 together with Rad17 and the 9-1-1 complex, activates Chk1 in a Claspin-dependent manner (18–22). ATR directly phosphorylates during an unperturbed cell division cycle and both Chk1 317 345 phosphorylation and replication stress enhanced these inter- Chk1 on two COOH-terminal residues: Ser (S317) and Ser actions.
    [Show full text]
  • The CUL4A Ubiquitin Ligase Is a Potential Therapeutic Target in Skin Cancer and Other Malignancies
    Chinese Journal of Cancer Review The CUL4A ubiquitin ligase is a potential therapeutic target in skin cancer and other malignancies Jeffrey Hannah1 and Peng-Bo Zhou1,2 Abstract Cullin 4A (CUL4A) is an E3 ubiquitin ligase that directly affects DNA repair and cell cycle progression by targeting substrates including damage-specific DNA-binding protein 2 (DDB2), xeroderma pigmentosum complementation group C (XPC), chromatin licensing and DNA replication factor 1 (Cdt1), and p21. Recent work from our laboratory has shown that Cul4a-deficient mice have greatly reduced rates of ultraviolet-induced skin carcinomas. On a cellular level, Cul4a-deficient cells have great capacity for DNA repair and demonstrate a slow rate of proliferation due primarily to increased expression of DDB2 and p21, respectively. This suggests that CUL4A promotes tumorigenesis (as well as accumulation of skin damage and subsequent premature aging) by limiting DNA repair activity and expediting S phase entry. In addition, CUL4A has been found to be up-regulated via gene amplification or overexpression in breast cancers, hepatocellular carcinomas, squamous cell carcinomas, adrenocortical carcinomas, childhood medulloblastomas, and malignant pleural mesotheliomas. Because of its oncogenic activity in skin cancer and up-regulation in other malignancies, CUL4A has arisen as a potential candidate for targeted therapeutic approaches. In this review, we outline the established functions of CUL4A and discuss the E3 ligase’s emergence as a potential driver of tumorigenesis. Key words Ubiquitination, cullins, DNA damage, cell cycle regulation, skin cancer, therapeutic targets For most cellular proteins, stability and degradation are scaffold, and one or multiple substrate-recruiting proteins at the regulated by the ubiquitin-proteosome system in which proteins are N-terminus[1,2].
    [Show full text]
  • The Role of the C-Terminus Merlin in Its Tumor Suppressor Function Vinay Mandati
    The role of the C-terminus Merlin in its tumor suppressor function Vinay Mandati To cite this version: Vinay Mandati. The role of the C-terminus Merlin in its tumor suppressor function. Agricultural sciences. Université Paris Sud - Paris XI, 2013. English. NNT : 2013PA112140. tel-01124131 HAL Id: tel-01124131 https://tel.archives-ouvertes.fr/tel-01124131 Submitted on 19 Mar 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 TABLE OF CONTENTS Abbreviations ……………………………………………………………………………...... 8 Resume …………………………………………………………………………………… 10 Abstract …………………………………………………………………………………….. 11 1. Introduction ………………………………………………………………………………12 1.1 Neurofibromatoses ……………………………………………………………………….14 1.2 NF2 disease ………………………………………………………………………………15 1.3 The NF2 gene …………………………………………………………………………….17 1.4 Mutational spectrum of NF2 gene ………………………………………………………..18 1.5 NF2 in other cancers ……………………………………………………………………...20 2. ERM proteins and Merlin ……………………………………………………………….21 2.1 ERMs ……………………………………………………………………………………..21 2.1.1 Band 4.1 Proteins and ERMs …………………………………………………………...21 2.1.2 ERMs structure ………………………………………………………………………....23 2.1.3 Sub-cellular localization and tissue distribution of ERMs ……………………………..25 2.1.4 ERM proteins and their binding partners ……………………………………………….25 2.1.5 Assimilation of ERMs into signaling pathways ………………………………………...26 2.1.5. A. ERMs and Ras signaling …………………………………………………...26 2.1.5. B. ERMs in membrane transport ………………………………………………29 2.1.6 ERM functions in metastasis …………………………………………………………...30 2.1.7 Regulation of ERM proteins activity …………………………………………………...31 2.1.7.
    [Show full text]
  • Delineating the Role of Cooperativity in the Design of Potent Protacs for BTK
    Delineating the role of cooperativity in the design of potent PROTACs for BTK Adelajda Zorbaa,b, Chuong Nguyenb, Yingrong Xub, Jeremy Starrb, Kris Borzillerib, James Smithb, Hongyao Zhuc, Kathleen A. Farleyb, WeiDong Dingb, James Schiemerb, Xidong Fengb, Jeanne S. Changb, Daniel P. Uccellob, Jennifer A. Youngb, Carmen N. Garcia-Irrizaryb, Lara Czabaniukb, Brandon Schuffb, Robert Oliverb, Justin Montgomeryb, Matthew M. Haywardb, Jotham Coeb, Jinshan Chenb, Mark Niosid, Suman Luthrae, Jaymin C. Shahe, Ayman El-Kattand, Xiayang Qiub, Graham M. Westb, Mark C. Noeb, Veerabahu Shanmugasundaramb, Adam M. Gilbertb, Matthew F. Brownb, and Matthew F. Calabreseb,1 aInternal Medicine Research Unit, Pfizer Worldwide Research and Development, Cambridge, MA 02139; bDiscovery Sciences, Pfizer Worldwide Research and Development, Groton, CT 06340; cComputational Sciences, Medicinal Sciences, Pfizer Worldwide Research and Development, Groton, CT 06340; dMedicine Design, Pfizer Worldwide Research and Development, Groton, CT 06340; and ePharmaceutical Sciences Small Molecule, Pfizer Worldwide Research and Development, Cambridge, MA 02139 Edited by Vishva M. Dixit, Genentech, San Francisco, CA, and approved June 20, 2018 (received for review March 1, 2018) Proteolysis targeting chimeras (PROTACs) are heterobifunctional cellular compartments and for targets that have Lys residues small molecules that simultaneously bind to a target protein and accessible for ubiquitination. A second selection criterion en route an E3 ligase, thereby leading to ubiquitination and subsequent to efficacious and selective target degradation could be de novo degradation of the target. They present an exciting opportunity to rational design of PROTACs. In a recent report, Gadd et al. (18) modulate proteins in a manner independent of enzymatic or describe an elegant model of PROTAC-facilitated target–ligase signaling activity.
    [Show full text]
  • Regulation of the Intranuclear Distribution of the Cockayne Syndrome Proteins Received: 26 July 2017 Teruaki Iyama, Mustafa N
    www.nature.com/scientificreports OPEN Regulation of the Intranuclear Distribution of the Cockayne Syndrome Proteins Received: 26 July 2017 Teruaki Iyama, Mustafa N. Okur, Tyler Golato, Daniel R. McNeill, Huiming Lu , Accepted: 1 November 2018 Royce Hamilton, Aishwarya Raja, Vilhelm A. Bohr & David M. Wilson III Published: xx xx xxxx Cockayne syndrome (CS) is an inherited disorder that involves photosensitivity, developmental defects, progressive degeneration and characteristics of premature aging. Evidence indicates primarily nuclear roles for the major CS proteins, CSA and CSB, specifcally in DNA repair and RNA transcription. We reveal herein a complex regulation of CSB targeting that involves three major consensus signals: NLS1 (aa467-481), which directs nuclear and nucleolar localization in cooperation with NoLS1 (aa302-341), and NLS2 (aa1038-1055), which seemingly optimizes nuclear enrichment. CSB localization to the nucleolus was also found to be important for full UVC resistance. CSA, which does not contain any obvious targeting sequences, was adversely afected (i.e. presumably destabilized) by any form of truncation. No inter-coordination between the subnuclear localization of CSA and CSB was observed, implying that this aspect does not underlie the clinical features of CS. The E3 ubiquitin ligase binding partner of CSA, DDB1, played an important role in CSA stability (as well as DDB2), and facilitated CSA association with chromatin following UV irradiation; yet did not afect CSB chromatin binding. We also observed that initial recruitment of CSB to DNA interstrand crosslinks is similar in the nucleoplasm and nucleolus, although fnal accumulation is greater in the former. Whereas assembly of CSB at sites of DNA damage in the nucleolus was not afected by RNA polymerase I inhibition, stable retention at these sites of presumed repair was abrogated.
    [Show full text]
  • Missense Mutations in the NF2 Gene Result in the Quantitative Loss of Merlin Protein and Minimally Affect Protein Intrinsic Function
    Missense mutations in the NF2 gene result in the quantitative loss of merlin protein and minimally affect protein intrinsic function Chunzhang Yang, Ashok R. Asthagiri, Rajiv R. Iyer, Jie Lu, David S. Xu, Alexander Ksendzovsky, Roscoe O. Brady1, Zhengping Zhuang1, and Russell R. Lonser1 Surgical Neurology Branch, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892 Contributed by Roscoe O. Brady, February 9, 2011 (sent for review December 29, 2010) Neurofibromatosis type 2 (NF2) is a multiple neoplasia syndrome Results and is caused by a mutation of the NF2 tumor suppressor gene Quantitative Tumor Suppressor Protein Levels and mRNA Expression. that encodes for the tumor suppressor protein merlin. Biallelic NF2 To assess the levels of merlin expression in NF2 tumors, we gene inactivation results in the development of central nervous quantitatively measured merlin expression in microdissected system tumors, including schwannomas, meningiomas, ependy- tumors from NF2 patients using Western blot analysis (Fig. 1A). momas, and astrocytomas. Although a wide variety of missense Quantitative protein analysis revealed a significant reduction in germline mutations in the coding sequences of the NF2 gene can merlin expression in NF2-associated meningiomas and schwan- cause loss of merlin function, the mechanism of this functional loss nomas (95% reduction in merlin expression; seven tumors) com- is unknown. To gain insight into the mechanisms underlying loss pared with normal adjacent central nervous system tissue. of merlin function in NF2, we investigated mutated merlin homeo- Consistent with Western blot analysis of merlin expression in NF2- stasis and function in NF2-associated tumors and cell lines.
    [Show full text]
  • Cul4a Promotes Zebrafish Primitive Erythropoiesis Via Upregulating Scl
    Yang et al. Cell Death and Disease (2019) 10:388 https://doi.org/10.1038/s41419-019-1629-7 Cell Death & Disease ARTICLE Open Access Cul4a promotes zebrafish primitive erythropoiesis via upregulating scl and gata1 expression Fan Yang1, Huili Hu1, Yuanyuan Liu2,MingShao2, Changshun Shao 3 and Yaoqin Gong1 Abstract CUL4A and CUL4B are closely related members in Cullin family and can each assemble a Cullin-RING E3 ligase complex (Cullin-RING Ligase 4A or 4B, CRL4A, or CRL4B) and participate in a variety of biological processes. Previously we showed that zebrafish cul4a, but not cul4b, is essential for cardiac and pectoral fin development. Here, we have identified cul4a as a crucial regulator of primitive erythropoiesis in zebrafish embryonic development. Depletion of cul4a resulted in a striking reduction of erythroid cells due to the inhibition of erythroid differentiation. Transcript levels for early hematopoietic regulatory genes including scl, lmo2, and gata1 are significantly reduced in cul4a-deficient embryos. Mechanistically, we demonstrated that scl and gata1, the central regulators of primitive hematopoiesis for erythroid determination, are transcriptionally upregulated by cul4a. These findings demonstrate an important role for cul4a in primitive erythropoiesis and may bear implications in regeneration medicine of anemia and related diseases. Introduction 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; which subsequently forms intermediate cell mass (ICM) Zebrafish (Danio rerio) has become a powerful model at the midline5,6. A sophisticated network of many tran- for investigating hematopoiesis because its transparency scription factors has been described to regulate primitive greatly facilitates the visualization of hematopoietic sys- and definitive hematopoiesis7. Among them, the stem cell tem.
    [Show full text]
  • MYC Modulation Around the CDK2/P27/SKP2 Axis
    G C A T T A C G G C A T genes Review MYC Modulation around the CDK2/p27/SKP2 Axis Per Hydbring 1, Alina Castell 2 and Lars-Gunnar Larsson 2,* 1 Department of Oncology-Pathology, Karolinska Institutet, SE-171 76 Stockholm, Sweden; [email protected] 2 Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, SE-171 77 Stockholm, Sweden; [email protected] * Correspondence: [email protected]; Tel.: +46-8-5248-7239; Fax: +46-8-330744 Academic Editor: Daitoku Sakamuro Received: 29 May 2017; Accepted: 24 June 2017; Published: 30 June 2017 Abstract: MYC is a pleiotropic transcription factor that controls a number of fundamental cellular processes required for the proliferation and survival of normal and malignant cells, including the cell cycle. MYC interacts with several central cell cycle regulators that control the balance between cell cycle progression and temporary or permanent cell cycle arrest (cellular senescence). Among these are the cyclin E/A/cyclin-dependent kinase 2 (CDK2) complexes, the CDK inhibitor p27KIP1 (p27) and the E3 ubiquitin ligase component S-phase kinase-associated protein 2 (SKP2), which control each other by forming a triangular network. MYC is engaged in bidirectional crosstalk with each of these players; while MYC regulates their expression and/or activity, these factors in turn modulate MYC through protein interactions and post-translational modifications including phosphorylation and ubiquitylation, impacting on MYC’s transcriptional output on genes involved in cell cycle progression and senescence. Here we elaborate on these network interactions with MYC and their impact on transcription, cell cycle, replication and stress signaling, and on the role of other players interconnected to this network, such as CDK1, the retinoblastoma protein (pRB), protein phosphatase 2A (PP2A), the F-box proteins FBXW7 and FBXO28, the RAS oncoprotein and the ubiquitin/proteasome system.
    [Show full text]
  • Modulates Replication by Recruiting CUL4 to Chromatin
    ARTICLE DOI: 10.1038/s41467-018-05177-6 OPEN The replication initiation determinant protein (RepID) modulates replication by recruiting CUL4 to chromatin Sang-Min Jang1, Ya Zhang1, Koichi Utani1, Haiqing Fu1, Christophe E. Redon1, Anna B. Marks1, Owen K. Smith1, Catherine J. Redmond1, Adrian M. Baris1, Danielle A. Tulchinsky1 & Mirit I. Aladjem1 1234567890():,; Cell cycle progression in mammals is modulated by two ubiquitin ligase complexes, CRL4 and SCF, which facilitate degradation of chromatin substrates involved in the regulation of DNA replication. One member of the CRL4 complex, the WD-40 containing protein RepID (DCAF14/PHIP), selectively binds and activates a group of replication origins. Here we show that RepID recruits the CRL4 complex to chromatin prior to DNA synthesis, thus playing a crucial architectural role in the proper licensing of chromosomes for replication. In the absence of RepID, cells rely on the alternative ubiquitin ligase, SKP2-containing SCF, to progress through the cell cycle. RepID depletion markedly increases cellular sensitivity to SKP2 inhibitors, which triggered massive genome re-replication. Both RepID and SKP2 interact with distinct, non-overlapping groups of replication origins, suggesting that selective interactions of replication origins with specific CRL components execute the DNA replication program and maintain genomic stability by preventing re-initiation of DNA replication. 1 Developmental Therapeutics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD 20892-4255, USA. Correspondence and requests for materials should be addressed to M.I.A. (email: [email protected]) NATURE COMMUNICATIONS | (2018) 9:2782 | DOI: 10.1038/s41467-018-05177-6 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/s41467-018-05177-6 ukaryotic cells create an exact and complete copy of their CDT213,33, which interacts with CUL4 and DDB1 to facilitate the Eentire cellular genome precisely once each cell cycle, degradation of CDT1 in a CDC48/p97-dependent pathway34,35.
    [Show full text]
  • A Feedback Regulation of CREB Activation Through the CUL4A and ERK Signaling
    Medical Oncology (2019) 36:20 https://doi.org/10.1007/s12032-018-1240-2 ORIGINAL PAPER A feedback regulation of CREB activation through the CUL4A and ERK signaling Cheemala Ashok1 · Sheikh Owais1 · Loudu Srijyothi1 · Murugan Selvam1 · Saravanaraman Ponne1 · Sudhakar Baluchamy1 Received: 9 November 2018 / Accepted: 17 December 2018 / Published online: 21 January 2019 © Springer Science+Business Media, LLC, part of Springer Nature 2019 Abstract CUL4A; an E3 ubiquitin ligase is involved in the degradation of negative regulators of cell cycle such as p21, p27, p53, etc., through polyubiquitination-mediated protein degradation. The functional role(s) of CUL4A proteins on their targets are well characterized; however, the transcriptional regulation of CUL4A, particularly at its promoter level is not yet studied. Therefore, in this study, using computational tools, we found cAMP responsive elements (CRE) at the locations of − 926 and − 764 with respect to transcription state site + 1 of CUL4A promoter. Hence, we investigated the role of CREB on the regulation of CUL4A transcription. Our chromatin immunoprecipitation (ChIP) data clearly showed increased levels of promoter occupancy of both CREB and pCREB on both CREs of CUL4A promoter. As expected, the expression of CUL4A increases and decreases upon the overexpression of and knocking down of CREB, respectively. Moreover, the inhibition of ERK pathway by U0126 not only reduces the CREB activation but also the CUL4A levels suggesting that CREB is the upstream activator of CUL4A transcription. The reduction of CUL4A levels upon the knocking down of CREB or by U0126 treatment increases the protein levels of CUL4A substrates such as p21 and p27.
    [Show full text]
  • Genome-Wide CRISPR Screens Reveal Genetic Mediators of Cereblon Modulator Toxicity in Primary Effusion Lymphoma
    bioRxiv preprint doi: https://doi.org/10.1101/619312; this version posted April 25, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Genome-wide CRISPR Screens Reveal Genetic Mediators of Cereblon Modulator Toxicity in Primary Effusion Lymphoma Ajinkya Patil1, Mark Manzano1, and Eva Gottwein1 1Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611 USA. Short Title: Cereblon Modulator Resistance Screens in PEL Corresponding Author: Eva Gottwein Department of Microbiology-Immunology Northwestern University Feinberg School of Medicine 320 E Superior St., Tarry Bldg., Room 6-735 Chicago, Illinois 60611 USA e-mail address: [email protected] Phone: +1-312-503-3075 Fax: +1-312-503-5101 Word Count Text: 3986 Word Count Abstract: 250 Figure Count: 7 main figures, 8 supplementary figures Table Count: 0 main manuscript, 8 supplementary tables Reference Count: 43 Scientific Category: Lymphoid Neoplasia 1 bioRxiv preprint doi: https://doi.org/10.1101/619312; this version posted April 25, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Genome-wide CRISPR/Cas9 screens represent a powerful approach to study mechanisms of drug action and resistance. Cereblon modulating agents (CMs) have recently emerged as candidates for therapeutic intervention in primary effusion lymphoma (PEL), a highly aggressive cancer caused by Kaposi’s sarcoma-associated herpesvirus. CMs bind to cereblon (CRBN), the substrate receptor of the cullin-RING type E3 ubiquitin ligase CRL4CRBN, and thereby trigger the acquisition and proteasomal degradation of neosubstrates.
    [Show full text]
  • UBE2G1 Governs the Destruction of Cereblon Neomorphic Substrates
    RESEARCH ARTICLE UBE2G1 governs the destruction of cereblon neomorphic substrates Gang Lu*, Stephanie Weng†, Mary Matyskiela†, Xinde Zheng, Wei Fang, Scott Wood, Christine Surka, Reina Mizukoshi, Chin-Chun Lu, Derek Mendy, In Sock Jang, Kai Wang, Mathieu Marella, Suzana Couto, Brian Cathers, James Carmichael, Philip Chamberlain, Mark Rolfe Celgene Corporation, San Diego, United States Abstract The cereblon modulating agents (CMs) including lenalidomide, pomalidomide and CC- 220 repurpose the Cul4-RBX1-DDB1-CRBN (CRL4CRBN) E3 ubiquitin ligase complex to induce the degradation of specific neomorphic substrates via polyubiquitination in conjunction with E2 ubiquitin-conjugating enzymes, which have until now remained elusive. Here we show that the ubiquitin-conjugating enzymes UBE2G1 and UBE2D3 cooperatively promote the K48-linked polyubiquitination of CRL4CRBN neomorphic substrates via a sequential ubiquitination mechanism. Blockade of UBE2G1 diminishes the ubiquitination and degradation of neomorphic substrates, and consequent antitumor activities elicited by all tested CMs. For example, UBE2G1 inactivation significantly attenuated the degradation of myeloma survival factors IKZF1 and IKZF3 induced by lenalidomide and pomalidomide, hence conferring drug resistance. UBE2G1-deficient myeloma cells, however, remained sensitive to a more potent IKZF1/3 degrader CC-220. Collectively, it will be of fundamental interest to explore if loss of UBE2G1 activity is linked to clinical resistance to drugs that hijack the CRL4CRBN to eliminate disease-driving
    [Show full text]