Protein Comparisons (Drosophila/Scptomyza/Larval Hemolymph Protein/Microcomplement Fixation/Hawaiian Geology) STEPHEN M
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The Male Terminalia of Seven American Species of Drosophila
Alpine Entomology 1 2017, 17–31 | DOI 10.3897/alpento.1.20669 The male terminalia of seven American species of Drosophila (Diptera, Drosophilidae) Carlos Ribeiro Vilela1 1 Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, Cidade Universitária “Armando de Salles Oliveira”, São Paulo - SP, 05508-090, Brazil http://zoobank.org/197D5E09-957B-4804-BF78-23F853C68B0A Corresponding author: Carlos Ribeiro Vilela ([email protected]) Abstract Received 28 August 2017 The male terminalia of seven species of Drosophila endemic to the New World are de- Accepted 28 September 2017 scribed or redescribed and illustrated: one in the hydei subgroup (D. guayllabambae) and Published 20 November 2017 four in the mulleri subgroup (D. arizonae, D. navojoa, D. nigrodumosa, and D. sonorae) of the repleta group; one in the sticta group (D. sticta) and one so far unassigned to group Academic editor: (D. comosa). The D. guayllabambae terminalia redescription is based on a wild-caught Patrick Rohner fly. The redescriptions of the terminalia of the four species in the mulleri subgroup are based on strain specimens, while those of D. sticta and D. comosa terminalia are based Key Words on their holotypes. D. guayllabambae seems to be a strictly mountainous species of the Ecuadorian and Peruvian Andes. D. nigrodumosa is apparently endemic to Venezuela, oc- Drosophila subgenus curring in the Andes as well as at lower altitudes. The remaining five occurs only at lower Drosophilinae altitudes of the American continent. The detailed line drawings depicted in this paper aim line drawings to help interested taxonomists to tell those species apart. -
Interview with David G. Aldrich, Jr., Chancellor of UCI, 1962-1984, at 2 Pm ~.F.24Th, 1989 /Ap'(Tl
Interview with David G. Aldrich, Jr., Chancellor of UCI, 1962-1984, at 2 pm ~.f.24th, 1989 /Ap'(tl 1. our last taped interview was in 1973. What were the high points and low points for you between 1973 and your retirement? 2. Could you please review the history of the Medical School in general, and the UCIMC hospital in particular? 3. How soon do you think UCI will have a hospital on campus? 4. How do you rate the four UC presidents under whom you served - Kerr, Hitch, Saxon, and Gardiner? (I have not included Harry Wellman) in support of UCI. 5. Could you explain to me the workings of.the Council of Chancellors? 6. Could you comment on the contributions of your Academic (later Executive) Vice Chancellors- Hinderaker, Peltason, Russell, Adams, McGaugh, and Lillyman? 7. What Program (or School) stimulated you the most? And which ones concerned you the most? How do they seem to you in 1989? 8. Those of us who were "present at the creation" admired your work with the community .- do you have any particular events that come to mind? 9. Your support of the Program in Social Ecology was strong from the first. Why did Arnie Binder have his resignation accepted when he was in Ireland? 10. Which faculty members impressed you the most in our drive for excellence? 11. Your relations with students were always excellent. Which students come to mind that you considered outstanding? We can both think of Michael Krisman! 12. Your record is outstanding in the area of student ethnic minorities. -
Microbial Interactions and the Ecology and Evolution of Hawaiian Drosophilidae
UC Berkeley UC Berkeley Previously Published Works Title Microbial interactions and the ecology and evolution of Hawaiian Drosophilidae. Permalink https://escholarship.org/uc/item/6pm2r6w6 Journal Frontiers in microbiology, 5(DEC) ISSN 1664-302X Authors O'Connor, Timothy K Humphrey, Parris T Lapoint, Richard T et al. Publication Date 2014 DOI 10.3389/fmicb.2014.00616 Peer reviewed eScholarship.org Powered by the California Digital Library University of California PERSPECTIVE ARTICLE published: 18 December 2014 doi: 10.3389/fmicb.2014.00616 Microbial interactions and the ecology and evolution of Hawaiian Drosophilidae Timothy K. O’Connor 1†, Parris T. Humphrey 1†, Richard T. Lapoint 1, Noah K. Whiteman1 and Patrick M. O’Grady 2 * 1 Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA 2 Environmental Science, Policy and Management, University of California Berkeley, Berkeley, CA, USA Edited by: M. Pilar Francino, Center for Public Adaptive radiations are characterized by an increased rate of speciation and expanded range Health Research, Spain of habitats and ecological niches exploited by those species. The Hawaiian Drosophilidae Reviewed by: is a classic adaptive radiation; a single ancestral species colonized Hawaii approximately Rob DeSalle, American Museum of 25 million years ago and gave rise to two monophyletic lineages, the Hawaiian Drosophila Natural History, USA Jens Walter, University of Nebraska, and the genus Scaptomyza. The Hawaiian Drosophila are largely saprophagous and rely USA on approximately 40 endemic plant families and their associated microbes to complete *Correspondence: development. Scaptomyza are even more diverse in host breadth. While many species of Patrick M. O’Grady, Environmental Scaptomyza utilize decomposing plant substrates, some species have evolved to become Science, Policy and Management, herbivores, parasites on spider egg masses, and exploit microbes on living plant tissue. -
The Biological Laboratory
LONG ISLAND BIOLOGICAL ASSOCIATION ANNUAL REPORT OF THE BIOLOGICAL LABORATORY COLD SPRING HARBOR LONG ISLAND, NEW YORK 1950 TABLE OF CONTENTS The Long Island Biological Association Officers 5 Board of Direectors 5 Committees 6 Members 7 Report of the Director 11 Reports of Laboratory Staff 20 Report of Summer Investigators 34 Course of Bacteriophages 40 Course on Bacterial Genetics 42 Phage Meeting 44 Nature Study Course 47 Cold Spring Harbor Symposia Publications 49 Laboratory Staff 51 Summer Research Investigators 52 Report of the Secretary, L. I. B. A. 53 Report of the Treasurer, L. I. B. A. 55 THE LONG ISLAND BIOLOGICAL ASSOCIATION President Robert Cushman Murphy Vice-President Secretary Arthur W. Page E. C. Mac Dowell Treasurer Assistant Secretary Grinnell Morris B. P. Kaufmann Director of The Biological Laboratory, M. Demerec BOARD OF DIRECTORS To serve until 1954 Amyas Ames Cold Spring Harbor, N. Y. Robert Chambers Marine Biological Laboratory George W. Corner Carnegie Institution of Washington Th. Dobzhansky Columbia University Ernst Mayr American Museum of Natural History Mrs. Walter H. Page Cold Spring Harbor, N. Y. Willis D. Wood Huntington, N. Y. Toserveuntil 1953 H. A. Abramson Cold Spring Harbor, N. Y. M. Demerec The Biological Laboratory Henry Hicks Westbury, N. Y. Dudley H. Mills Glen Head, N. Y. Stuart Mudd University of Pennsylvania Medical School Robert Cushman Murphy American Museum of Natural History John K. Roosevelt Oyster Bay, N. Y. To serve until 1952 W. H. Cole Rutgers University Mrs. George S. Franklin Cold Spring Harbor, N. Y. E. C. Mac Dowell Cold Spring Harbor, N. Y. -
A New Species of Neotropical Drosophila (Diptera, Drosophilidae)
Revista Brasileira de Entomologia 61 (2017) 232–238 REVISTA BRASILEIRA DE Entomologia A Journal on Insect Diversity and Evolution www.rbentomologia.com Systematics, Morphology and Biogeography A new species of Neotropical Drosophila (Diptera, Drosophilidae) belonging to the guarani group a a,∗ b Vilma Ratcov , Carlos R. Vilela , Beatriz Goni˜ a Universidade de São Paulo, Instituto de Biociências, Departamento de Genética e Biologia Evolutiva, São Paulo, SP, Brazil b Universidad de la República, Facultad de Ciencias, Instituto de Biología, Sección Genética Evolutiva, Montevideo, Uruguay a r a b s t r a c t t i c l e i n f o Article history: Drosophila butantan sp. nov., a species belonging to the guarani group and closely related to Drosophila Received 2 March 2017 nigrifemur from Bolivia, is described based on a female, and some of its offspring, collected at the forest Accepted 8 June 2017 reserve of the Instituto de Biociências da Universidade de São Paulo, Cidade Universitária “Armando de Salles Available online 22 June 2017 Oliveira”, São Paulo City, state of São Paulo, Brazil. Although externally similar, the two apparently forest- Associate Editor: Sarah Oliveira dwelling species can be told apart by having distinct oviscapt valves and spermathecal introverts and tips. Accordingly, a proposal is made to also include D. nigrifemur, a previously unassigned species, in the Keywords: guarani group. The two species seem to be also related to Drosophila alexandrei and Drosophila guaraja Atlantic forest as indicated by their external morphology, their elongate spermathecae and the not so sharply pointed Brazil oviscapt valves. The karyotypes of the new species differ from those described for D. -
Downloaded Transcribed from an RNA Template Directly Onto a Consensus Sequences of Jockey Families Deposited in the Tambones Et Al
Tambones et al. Mobile DNA (2019) 10:43 https://doi.org/10.1186/s13100-019-0184-1 RESEARCH Open Access High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids Izabella L. Tambones1, Annabelle Haudry2, Maryanna C. Simão1 and Claudia M. A. Carareto1* Abstract Background: The use of large-scale genomic analyses has resulted in an improvement of transposable element sampling and a significant increase in the number of reported HTT (horizontal transfer of transposable elements) events by expanding the sampling of transposable element sequences in general and of specific families of these elements in particular, which were previously poorly sampled. In this study, we investigated the occurrence of HTT events in a group of elements that, until recently, were uncommon among the HTT records in Drosophila – the Jockey elements, members of the LINE (long interspersed nuclear element) order of non-LTR (long terminal repeat) retrotransposons. The sequences of 111 Jockey families deposited in Repbase that met the criteria of the analysis were used to identify Jockey sequences in 48 genomes of Drosophilidae (genus Drosophila, subgenus Sophophora: melanogaster, obscura and willistoni groups; subgenus Drosophila: immigrans, melanica, repleta, robusta, virilis and grimshawi groups; subgenus Dorsilopha: busckii group; genus/subgenus Zaprionus and genus Scaptodrosophila). Results: Phylogenetic analyses revealed 72 Jockey families in 41 genomes. Combined analyses revealed 15 potential HTT events between species belonging to different -
Diptera – Brachycera
Biodiversity Data Journal 3: e4187 doi: 10.3897/BDJ.3.e4187 Data Paper Fauna Europaea: Diptera – Brachycera Thomas Pape‡§, Paul Beuk , Adrian Charles Pont|, Anatole I. Shatalkin¶, Andrey L. Ozerov¶, Andrzej J. Woźnica#, Bernhard Merz¤, Cezary Bystrowski«», Chris Raper , Christer Bergström˄, Christian Kehlmaier˅, David K. Clements¦, David Greathead†,ˀ, Elena Petrovna Kamenevaˁ, Emilia Nartshuk₵, Frederik T. Petersenℓ, Gisela Weber ₰, Gerhard Bächli₱, Fritz Geller-Grimm₳, Guy Van de Weyer₴, Hans-Peter Tschorsnig₣, Herman de Jong₮, Jan-Willem van Zuijlen₦, Jaromír Vaňhara₭, Jindřich Roháček₲, Joachim Ziegler‽, József Majer ₩, Karel Hůrka†,₸, Kevin Holston ‡‡, Knut Rognes§§, Lita Greve-Jensen||, Lorenzo Munari¶¶, Marc de Meyer##, Marc Pollet ¤¤, Martin C. D. Speight««, Martin John Ebejer»», Michel Martinez˄˄, Miguel Carles-Tolrá˅˅, Mihály Földvári¦¦, Milan Chvála ₸, Miroslav Bartákˀˀ, Neal L. Evenhuisˁˁ, Peter J. Chandler₵₵, Pierfilippo Cerrettiℓℓ, Rudolf Meier ₰₰, Rudolf Rozkosny₭, Sabine Prescher₰, Stephen D. Gaimari₱₱, Tadeusz Zatwarnicki₳₳, Theo Zeegers₴₴, Torsten Dikow₣₣, Valery A. Korneyevˁ, Vera Andreevna Richter†,₵, Verner Michelsen‡, Vitali N. Tanasijtshuk₵, Wayne N. Mathis₣₣, Zdravko Hubenov₮₮, Yde de Jong ₦₦,₭₭ ‡ Natural History Museum of Denmark, Copenhagen, Denmark § Natural History Museum Maastricht / Diptera.info, Maastricht, Netherlands | Oxford University Museum of Natural History, Oxford, United Kingdom ¶ Zoological Museum, Moscow State University, Moscow, Russia # Wrocław University of Environmental and Life Sciences, Wrocław, -
Highly Contiguous Assemblies of 101 Drosophilid Genomes
TOOLS AND RESOURCES Highly contiguous assemblies of 101 drosophilid genomes Bernard Y Kim1†*, Jeremy R Wang2†, Danny E Miller3, Olga Barmina4, Emily Delaney4, Ammon Thompson4, Aaron A Comeault5, David Peede6, Emmanuel RR D’Agostino6, Julianne Pelaez7, Jessica M Aguilar7, Diler Haji7, Teruyuki Matsunaga7, Ellie E Armstrong1, Molly Zych8, Yoshitaka Ogawa9, Marina Stamenkovic´-Radak10, Mihailo Jelic´ 10, Marija Savic´ Veselinovic´ 10, Marija Tanaskovic´ 11, Pavle Eric´ 11, Jian-Jun Gao12, Takehiro K Katoh12, Masanori J Toda13, Hideaki Watabe14, Masayoshi Watada15, Jeremy S Davis16, Leonie C Moyle17, Giulia Manoli18, Enrico Bertolini18, Vladimı´rKosˇtˇa´ l19, R Scott Hawley20, Aya Takahashi9, Corbin D Jones6, Donald K Price21, Noah Whiteman7, Artyom Kopp4, Daniel R Matute6†*, Dmitri A Petrov1†* 1Department of Biology, Stanford University, Stanford, United States; 2Department of Genetics, University of North Carolina, Chapel Hill, United States; 3Department of Pediatrics, Division of Genetic Medicine, University of Washington and Seattle Children’s Hospital, Seattle, United States; 4Department of Evolution and Ecology, University of California Davis, Davis, United States; 5School of Natural Sciences, Bangor University, Bangor, United Kingdom; 6Biology Department, University of North Carolina, Chapel Hill, United States; 7Department of Integrative Biology, University of California, Berkeley, Berkeley, United States; 8Molecular and Cellular Biology Program, University of Washington, Seattle, United States; 9Department of 10 *For correspondence: -
Highly Contiguous Assemblies of 101 Drosophilid Genomes
University of Kentucky UKnowledge Biology Faculty Publications Biology 7-19-2021 Highly Contiguous Assemblies of 101 Drosophilid Genomes Bernard Y. Kim Stanford University Jeremy R. Wang University of North Carolina, Chapel Hill Danny E. Miller University of Washington Olga Barmina University of California, Davis Emily Delaney University of California, Davis See next page for additional authors Follow this and additional works at: https://uknowledge.uky.edu/biology_facpub Part of the Ecology and Evolutionary Biology Commons, and the Genetics and Genomics Commons Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Repository Citation Kim, Bernard Y.; Wang, Jeremy R.; Miller, Danny E.; Barmina, Olga; Delaney, Emily; Thompson, Ammon; Comeault, Aaron A.; Peede, David; D'Agostino, Emmanuel R. R.; Pelaez, Julianne; Aguilar, Jessica M.; Haji, Diler; Matsunaga, Teruyuki; Armstrong, Ellie E.; Zych, Molly; Ogawa, Yoshitaka; Stamenković-Radak, Marina; Jelić, Mihailo; Veselinović, Marija Savić; Tanasković, Marija; and Davis, Jeremy S., "Highly Contiguous Assemblies of 101 Drosophilid Genomes" (2021). Biology Faculty Publications. 215. https://uknowledge.uky.edu/biology_facpub/215 This Article is brought to you for free and open access by the Biology at UKnowledge. It has been accepted for inclusion in Biology Faculty Publications by an authorized administrator of UKnowledge. For more information, please contact [email protected]. Highly Contiguous Assemblies of 101 Drosophilid Genomes Digital Object Identifier (DOI) https://doi.org/10.7554/eLife.66405 Notes/Citation Information Published in eLife, v. 10, e66405. © 2021, Kim et al. This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited. -
Diversification in the Hawaiian Drosophila
Diversification in the Hawaiian Drosophila By Richard Thomas Lapoint A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Environmental Science, Policy and Management in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Patrick M. O’Grady, Chair Professor George K. Roderick Professor Craig Moritz Spring 2011 ! Diversification in the Hawaiian Drosophila Copyright 2011 By Richard Thomas Lapoint ! Abstract Diversification in the Hawaiian Drosophila by Richard Thomas Lapoint Doctor of Philosophy in Environmental Science, Policy and Management University of California, Berkeley Professor Patrick M. O’Grady, Chair The Hawaiian Islands have been recognized as an ideal place to study evolutionary processes due to their remote location, multitude of ecological niches and diverse biota. As the oldest and largest radiation in the Hawaiian Islands the Hawaiian Drosophilidae have been the focus of decades of evolutionary research and subsequently the basis for understanding how much of the diversity within these islands and other island systems have been generated. This dissertation revolves around the diversification of a large clade of Hawaiian Drosophila, and examines the molecular evolution of this group at several different temporal scales. The antopocerus, modified tarsus, ciliated tarsus (AMC) clade is a group of 90 described Drosophila species that utilize decaying leafs as a host substrate and are characterized by a set of diagnostic secondary sexual characters: modifications in either antennal or tarsal morphologies. This research uses both phylogenetic and population genetic methods to study how this clade has evolved at increasingly finer evolutionary scales, from lineage to population level. -
Comparative Genomics and Host Plant Adaptation in Hawaiian Picture-Wing Drosophila
Comparative genomics and host plant adaptation in Hawaiian Picture-wing Drosophila A THESIS SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI’I AT HILO IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN TROPICAL CONSERVATION BIOLOGY AND ENVIRONMENTAL SCIENCE MAY 2016 By Ellie E. Armstrong Thesis Committee: Donald Price, Elizabeth Stacy, Rosemary Gillespie, and Stefan Prost ACKNOWLEDGMENTS I would like to thank numerous people for their help and support, without which this research project would not have been possible. Foremost, I would like to thank my advisor Dr. Donald Price for his belief in my ability to accomplish an ambitious amount during my time at UH Hilo and for his help with all things concerning picture-wing Drosophila . Thank you to my committee members, Elizabeth Stacy and Rosemary Gillespie for providing invaluable feedback both in terms of writing and ecological theory, and to committee member Stefan Prost, who gave complete guidance of the bioinformatics and genome analyses. Thanks to Rasmus Nielsen, Tyler Linderoth, and Russ Corbett-Detig for help on selection analyses and advising. Thanks to collaborators Durrell Kapan, Pawel Michalak, and Ken Kaneshiro for providing samples and data and whose time and efforts made working with the picture-wings even more rewarding. Thanks to Cerise Chen and Anna Sellas who carefully extracted the flies and treated my specimens as if they were their own. Thank you to Karl Magnacca, Pat Bily, and Mark Wright, whose knowledge and help accessing the forest reserves as well as identifying species was more than appreciated. Thank you to Jun Ying Lim, Chris Yakym, Kylle Roy, Tom Fezza, Julien Petillon, Curtis Ewing, Britton Cole, Henrik Krehenwinkel, Jacqueline Haggarty, Stephanie Gayle, Patrick O’Grady, and Susan Kennedy for help in the field and for being supportive of this work. -
Diversification and Dispersal of the Hawaiian Drosophilidae: the Evolution of Scaptomyza
UC Berkeley UC Berkeley Previously Published Works Title Diversification and dispersal of the Hawaiian Drosophilidae: the evolution of Scaptomyza. Permalink https://escholarship.org/uc/item/7610z2k4 Journal Molecular phylogenetics and evolution, 69(1) ISSN 1055-7903 Authors Lapoint, Richard T O'Grady, Patrick M Whiteman, Noah K Publication Date 2013-10-01 DOI 10.1016/j.ympev.2013.04.032 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Molecular Phylogenetics and Evolution 69 (2013) 95–108 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Diversification and dispersal of the Hawaiian Drosophilidae: The evolution of Scaptomyza ⇑ Richard T. Lapoint a, , Patrick M. O’Grady b, Noah K. Whiteman a a University of Arizona, Department of Ecology and Evolutionary Biology, 310 Biosciences West, Tucson, AZ 85721, United States b University of California, Department of Environmental Science, Policy and Management, 137 Mulford Hall, Berkeley, CA 94720, United States article info abstract Article history: The genus Scaptomyza is emerging as a model lineage in which to study biogeography and ecological Received 8 October 2012 adaptation. To place future research on these species into an evolutionary framework we present the Revised 21 March 2013 most comprehensive phylogeny of Scaptomyza to date, based on 5042 bp of DNA sequence data and rep- Accepted 19 April 2013 resentatives from 13 of 21 subgenera. We infer strong support for the monophyly of almost all subgenera Available online 10 May 2013 with exceptions corroborating hypotheses of conflict inferred from previous taxonomic studies. We find evidence that the lineage originated in the Hawaiian Islands and subsequently dispersed to the mainland Keywords: and other remote oceanic islands.