New Localities and Habitat Conditions for Choiromyces Meandriformis Vitt
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The Macrofungi Checklist of Liguria (Italy): the Current Status of Surveys
Posted November 2008. Summary published in MYCOTAXON 105: 167–170. 2008. The macrofungi checklist of Liguria (Italy): the current status of surveys MIRCA ZOTTI1*, ALFREDO VIZZINI 2, MIDO TRAVERSO3, FABRIZIO BOCCARDO4, MARIO PAVARINO1 & MAURO GIORGIO MARIOTTI1 *[email protected] 1DIP.TE.RIS - Università di Genova - Polo Botanico “Hanbury”, Corso Dogali 1/M, I16136 Genova, Italy 2 MUT- Università di Torino, Dipartimento di Biologia Vegetale, Viale Mattioli 25, I10125 Torino, Italy 3Via San Marino 111/16, I16127 Genova, Italy 4Via F. Bettini 14/11, I16162 Genova, Italy Abstract— The paper is aimed at integrating and updating the first edition of the checklist of Ligurian macrofungi. Data are related to mycological researches carried out mainly in some holm-oak woods through last three years. The new taxa collected amount to 172: 15 of them belonging to Ascomycota and 157 to Basidiomycota. It should be highlighted that 12 taxa have been recorded for the first time in Italy and many species are considered rare or infrequent. Each taxa reported consists of the following items: Latin name, author, habitat, height, and the WGS-84 Global Position System (GPS) coordinates. This work, together with the original Ligurian checklist, represents a contribution to the national checklist. Key words—mycological flora, new reports Introduction Liguria represents a very interesting region from a mycological point of view: macrofungi, directly and not directly correlated to vegetation, are frequent, abundant and quite well distributed among the species. This topic is faced and discussed in Zotti & Orsino (2001). Observations prove an high level of fungal biodiversity (sometimes called “mycodiversity”) since Liguria, though covering only about 2% of the Italian territory, shows more than 36 % of all the species recorded in Italy. -
Truffle Trouble: What Happened to the Tuberales?
mycological research 111 (2007) 1075–1099 journal homepage: www.elsevier.com/locate/mycres Truffle trouble: what happened to the Tuberales? Thomas LÆSSØEa,*, Karen HANSENb,y aDepartment of Biology, Copenhagen University, DK-1353 Copenhagen K, Denmark bHarvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Cambridge, MA 02138, USA article info abstract Article history: An overview of truffles (now considered to belong in the Pezizales, but formerly treated in Received 10 February 2006 the Tuberales) is presented, including a discussion on morphological and biological traits Received in revised form characterizing this form group. Accepted genera are listed and discussed according to a sys- 27 April 2007 tem based on molecular results combined with morphological characters. Phylogenetic Accepted 9 August 2007 analyses of LSU rDNA sequences from 55 hypogeous and 139 epigeous taxa of Pezizales Published online 25 August 2007 were performed to examine their relationships. Parsimony, ML, and Bayesian analyses of Corresponding Editor: Scott LaGreca these sequences indicate that the truffles studied represent at least 15 independent line- ages within the Pezizales. Sequences from hypogeous representatives referred to the fol- Keywords: lowing families and genera were analysed: Discinaceae–Morchellaceae (Fischerula, Hydnotrya, Ascomycota Leucangium), Helvellaceae (Balsamia and Barssia), Pezizaceae (Amylascus, Cazia, Eremiomyces, Helvellaceae Hydnotryopsis, Kaliharituber, Mattirolomyces, Pachyphloeus, Peziza, Ruhlandiella, Stephensia, Hypogeous Terfezia, and Tirmania), Pyronemataceae (Genea, Geopora, Paurocotylis, and Stephensia) and Pezizaceae Tuberaceae (Choiromyces, Dingleya, Labyrinthomyces, Reddellomyces, and Tuber). The different Pezizales types of hypogeous ascomata were found within most major evolutionary lines often nest- Pyronemataceae ing close to apothecial species. Although the Pezizaceae traditionally have been defined mainly on the presence of amyloid reactions of the ascus wall several truffles appear to have lost this character. -
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Mycologia. 102(5), 20lO, pp. 1042-1057. DOl: lO.3852/09-213 1::-- 2010 by The Mycological Society of America, Lawrence, KS 66044-8897 Improved resolution of major clades within Tuberand taxonomy of species within the Tubergibbosum complex Gregory Bonito1 INTRODUCTION Department of Biology, Duke University, Durham, In 1899 H.W. Harkness published his seminal paper North Carolina 27708-0338 on California hypogeous fungi, the first serious work James M. Trappe on these fungi in North America. Tuber gibbosum Department of Forest Ecosystems and Society, Oregon Harkn. was included among the 48 new species he State University, Corvallis, Oregon 97331-5752 described. Gilkey (1925) described a related species, Pat Rawlinson T. giganteum Gilkey, but later reduced that species to North American TrujJling Society, P. O. Box 296, synonymy with T. gibbosum (Gilkey 1939). Tuber Corvallis, Oregon 97339 gibbosumappeared to be the most abundant species of the genus in the Pacific Northwest, ranging from the Rytas Vilgalys San Francisco Bay area of California north to Department of Biology, Duke University, Durham, North Carolina 27708-0338 Vancouver Island, British Columbia. It was thought to fruit from early autumn through winter and into the early summer and to be primarily, if not Abstract: Tuber gibbosum Harkn., described from exclusively, associated with Douglas-fir (Pseudotsuga northern California, originally was thought to be a menziesii) at relatively low elevations west of the single, variable species that fruited from autumn Cascade Mountains. Tuber gibbosumhas been hypoth through winter to spring. It has become popular as a esized to be part of the Puberulum clade, based on culinary truffle in northwestern USA, where it is morphology, because of its light-colored fruit body commercially harvested. -
Fifth International Scientific Agricultural Symposium „Agrosym 2014“
Fifth International Scientific Agricultural Symposium „Agrosym 2014“ Original scientific paper 10.7251/AGSY1404109LJ HABITAT CONDITIONS AND USABILITY OF THE HOG TRUFFLE (Choiromyces Meandriformis Vitt.) FOUND IN BOSNIA AND HERZEGOVINA Srdjan LJUBOJEVIC1*, Dane MARCETA2, Vladimir STUPAR2 1Faculty for Ecology, Independent University, Banja Luka, Bosnia and Herzegovina 2Faculty of Forestry, University of Banja Luka, Bosnia and Herzegovina *Corresponding author: [email protected] Abstract Several specimens of the hog truffle fungus (Choiromyces meandriformis Vitt.), that belongs to the family Tuberaceae Dumort. (1822) were found in the artificially established middle- aged Norway spruce forests (Picea abies (L.) Karsten) in the Kneževo area of the Republic of Srpska in Bosnia and Herzegovina. Besides the spruce as a sole species in the tree layer, common hazel, single-seeded hawthorn and old man`s beard were found in the high shrub layer. Nine species were registered in the low shrub layer and 32 species in the herb layer, with mosses as the most abundant species due to acidification of the upper soil layer by the spruce needles. Unlike the "true truffles", hog truffle partly emerges on the surface, which makes it easier to spot without truffle dogs or other trained animals. Soli under spruce plantation were strongly acid (pH 3.9 - 4.6) and illimerised. Parent materials were flysch, i.e. conglomerates, marls and breccias. Soil texture was silt loam and dominant soil separate was silt (63.59 %). Chemical analysis of the flesh of fungus show that it fulfills criteria related to the edible mushrooms, except concentration of arsenic (As), that is much above (2.1 mg/kg) prescribed limit (0.3 mg/kg). -
Diversity, Ecology, and Conservation of Truffle Fungi in Forests of the Pacific Northwest
United States Department of Agriculture Diversity, Ecology, and Forest Service Conservation of Truffle Pacific Northwest Research Station Fungi in Forests of the General Technical Report PNW-GTR-772 April 2009 Pacific Northwest James M. Trappe, Randy Molina, Daniel L. Luoma, D E E P R A U R T LT MENT OF AGRICU Efren Cázares, David Pilz, Jane E. Smith, Michael A. Castellano, Steven L. Miller, and Matthew J. Trappe Authors James M. Trappe is a professor, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on history of truffle science in the Pacific Northwest (PNW), evolution, and diversity of truffles. Randy Molina is a research botanist (retired), U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Forestry Sciences Laboratory, 629 SW Main, Suite 400, Portland, OR 97205; he prepared sections on introductory concepts, mycorrhizal symbiosis and specificity, fungal rarity, management principles, and historical contributions of James Trappe to truffle science in the PNW. Daniel L. Luoma is an assistant professor, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on community ecology, mycophagy, silvicultural effects, and inventory methods. Efren Cázares is an affiliate faculty member, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on genera descriptions. David Pilz is an affiliate faculty member, Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331; he prepared sections on culinary truffles. Jane E. Smith is a research botanist and Michael Castellano is a research forester, U.S. -
A Phylogenetic Overview of the Family Pyronemataceae (Ascomycota, Pezizales)
mycological research 111 (2007) 549–571 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A phylogenetic overview of the family Pyronemataceae (Ascomycota, Pezizales) Brian A. PERRY*, Karen HANSENy, Donald H. PFISTER Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Ave., Cambridge, MA 02138, USA article info abstract Article history: Partial sequences of nuLSU rDNA were obtained to investigate the phylogenetic relation- Received 11 September 2006 ships of Pyronemataceae, the largest and least studied family of Pezizales. The dataset includes Received in revised form sequences for 162 species from 51 genera of Pyronemataceae, and 39 species from an addi- 14 February 2007 tional 13 families of Pezizales. Parsimony, ML, and Bayesian analyses suggest that Pyronema- Accepted 14 March 2007 taceae is not monophyletic as it is currently circumscribed. Ascodesmidaceae is nested within Published online 23 March 2007 Pyronemataceae, and several pyronemataceous taxa are resolved outside the family. Glaziella- Corresponding Editor: ceae forms the sister group to Pyronemataceae in ML analyses, but this relationship, as well as H. Thorsten Lumbsch those of Pyronemataceae to the other members of the lineage, are not resolved with support. Fourteen clades of pyronemataceous taxa are well supported and/or present in all recovered Keywords: trees. Several pyronemataceous genera are suggested to be non-monophyletic, including Bayesian analyses Anthracobia, Cheilymenia, Geopyxis, Humaria, Lasiobolidium, Neottiella, Octospora, Pulvinula, Discomycetes Stephensia, Tricharina, and Trichophaea. Cleistothecial and truffle or truffle-like ascomata Fungi forms appear to have evolved independently multiple times within Pyronemataceae. Results Maximum likelihood of these analyses do not support previous classifications of Pyronemataceae, and suggest that Molecular phylogeny morphological characters traditionally used to segregate the family into subfamilial groups are not phylogenetically informative above the genus level. -
Pezizomycetes Genomes Reveal the Molecular Basis of Ectomycorrhizal Truffle Lifestyle
ARTICLES https://doi.org/10.1038/s41559-018-0710-4 Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle Claude Murat1,25*, Thibaut Payen1,25, Benjamin Noel2, Alan Kuo3, Emmanuelle Morin 1, Juan Chen1,4, Annegret Kohler1, Krisztina Krizsán5, Raffaella Balestrini 6, Corinne Da Silva2, Barbara Montanini 7, Mathieu Hainaut8, Elisabetta Levati 7, Kerrie W. Barry3, Beatrice Belfiori9, Nicolas Cichocki1, Alicia Clum3, Rhyan B. Dockter3, Laure Fauchery1, Julie Guy2, Mirco Iotti 10, François Le Tacon1, Erika A. Lindquist 3, Anna Lipzen3, Fabienne Malagnac11, Antonietta Mello6, Virginie Molinier12,13, Shingo Miyauchi 1, Julie Poulain2, Claudia Riccioni9, Andrea Rubini9, Yaron Sitrit14, Richard Splivallo15, Stefanie Traeger16, Mei Wang3, Lucia Žifčáková17, Daniel Wipf12, Alessandra Zambonelli18, Francesco Paolocci 9, Minou Nowrousian16, Simone Ottonello7, Petr Baldrian 17, Joseph W. Spatafora19, Bernard Henrissat8,20,21, Laszlo G. Nagy 5, Jean-Marc Aury 2, Patrick Wincker2, Igor V. Grigoriev 3,22, Paola Bonfante 23 and Francis M. Martin 1,24* Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpin- ning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose- degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. -
A First Checklist of Macrofungi for South Africa
A peer-reviewed open-access journal MycoKeys 63: 1–48 (2020) Macrofungal checklist for South Africa 1 doi: 10.3897/mycokeys.63.36566 CHECKLIST MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research A first checklist of macrofungi for South Africa Tonjock Rosemary Kinge1,2, Gary Goldman3, Adriaana Jacobs4, George Gatere Ndiritu5, Marieka Gryzenhout1 1 Department of Genetics, University of the Free State, Bloemfontein, PO Box 339, Bloemfontein 9300, Re- public of South Africa 2 Department of Biological Sciences, Faculty of Science, University of Bamenda, P.O. Box 39, Bambili, North West Region, Cameroon 3 MushroomFundi, Cape Town, South Africa 4 National Collection of Fungi, Mycology Unit, Plant Health and Protection, Agricultural Research Council, Pretoria, South Africa 5 School of Natural Resources and Environmental Studies, Karatina University, P.O. Box 1957, Karatina 10101, Kenya Corresponding author: Marieka Gryzenhout ([email protected]) Academic editor: G. Rambold | Received 27 May 2019 | Accepted 7 November 2019 | Published 5 February 2020 Citation: Kinge TR, Goldman G, Jacobs A, Ndiritu GG, Gryzenhout M (2020) A first checklist of macrofungi for South Africa. MycoKeys 63: 1–48. https://doi.org/10.3897/mycokeys.63.36566 Abstract Macrofungi are considered as organisms that form large fruiting bodies above or below the ground that are visible without the aid of a microscope. These fungi include most basidiomycetes and a small number of ascomycetes. Macrofungi have different ecological roles and uses, where some are edible, medicinal, poisonous, decomposers, saprotrophs, predators and pathogens, and they are often used for innovative biotechnological, medicinal and ecological applications. However, comprehensive checklists, and compi- lations on the diversity and distribution of mushrooms are lacking for South Africa, which makes regula- tion, conservation and inclusion in national biodiversity initiatives difficult. -
Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage Gregory Bonito, Matthew E
Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage Gregory Bonito, Matthew E. Smith, Michael Nowak, Rosanne A. Healy, Gonzalo Guevara, Efren Cazares, Akihiko Kinoshita, Eduardo R. Nouhra, Laura S. Dominguez, Leho Tedersoo, et al. To cite this version: Gregory Bonito, Matthew E. Smith, Michael Nowak, Rosanne A. Healy, Gonzalo Guevara, et al.. Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage. PLoS ONE, Public Library of Science, 2013, 8 (1), 10.1371/jour- nal.pone.0052765. hal-01268210 HAL Id: hal-01268210 https://hal.archives-ouvertes.fr/hal-01268210 Submitted on 29 Nov 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage Gregory Bonito1*, Matthew E. Smith14, Michael Nowak13, Rosanne A. Healy2, Gonzalo Guevara3, Efren Ca´zares4, Akihiko Kinoshita11, Eduardo R. Nouhra5, Laura S. Domı´nguez5, Leho Tedersoo6, Claude Murat7, Yun Wang8, Baldomero Arroyo Moreno9, Donald H. Pfister10, Kazuhide Nara11, Alessandra Zambonelli12, James M. Trappe4, Rytas Vilgalys1 1 Deparment of Biology, Duke University, Durham, North Carolina, United States of America, 2 University of Minnesota, Department of Plant Biology, St. -
Bonito Historical Biogeography.Pdf
Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Bonito, Gregory, Matthew E. Smith, Michael Nowak, Rosanne A. Healy, Gonzalo Guevara, Efren Cázares, Akihiko Kinoshita, et al. 2013. Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage. Edited by Jason E. Stajich. PLoS ONE 8, no. 1: e52765. doi:10.1371/journal.pone.0052765. Published Version doi:10.1371/journal.pone.0052765 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:30168158 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage Gregory Bonito1*, Matthew E. Smith14, Michael Nowak13, Rosanne A. Healy2, Gonzalo Guevara3, Efren Ca´zares4, Akihiko Kinoshita11, Eduardo R. Nouhra5, Laura S. Domı´nguez5, Leho Tedersoo6, Claude Murat7, Yun Wang8, Baldomero Arroyo Moreno9, Donald H. Pfister10, Kazuhide Nara11, Alessandra Zambonelli12, James M. Trappe4, Rytas Vilgalys1 1 Deparment of Biology, Duke University, Durham, North Carolina, United States -
The Caloscyphaceae (Pezizomycetes, Ascomycota), with a New Genus
Mycol Progress (2013) 12:667–674 DOI 10.1007/s11557-012-0874-2 ORIGINAL ARTICLE The Caloscyphaceae (Pezizomycetes, Ascomycota), with a new genus Donald H. Pfister & Carlo Agnello & Angela Lantieri & Katherine F. LoBuglio Received: 29 August 2012 /Revised: 20 November 2012 /Accepted: 25 November 2012 /Published online: 9 December 2012 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2012 Abstract The family Caloscyphaceae with a single genus, of north temperate regions; principally, it grows under Caloscypha, has been considered to include a single species, conifers and on calcareous soil, with an anamorphic C. fulgens. Study of an overlooked second species, Caloscypha state represented by Geniculodendron pyriforme (Paden incarnata from North Africa and Italy, using SSU, LSU rDNA, et al. 1978). Caloscypha fulgens has been the only species and morphology allows placement of this species in a new generally recognized in the genus. Harmaja’s characterization genus, Kallistoskypha, in the Caloscyphaceae. This fungus of the family centered on ascospores that lack secondary is found in association with Eucalyptus species. The species wall layers; an ascus wall that may thicken distally; paraphy- was recently redescribed from Spain under the name ses that taper apically; an anamorph, Geniculodendron pyr- Marcelleina parvispora. Caloscypha fulgens, the type spe- iforme; and a distinctive phylogenetic placement first cies of the genus Caloscypha, shows sequence variation pointed out by Landvik et al. (1997), that has been from across its range. confirmed by subsequent workers (Hansen and Pfister 2006, Perry et al. 2007). Earlier placements of C. fulgens Keywords Eucalyptus . Marcelleina parvispora . suggested an alliance with the Pyronemataceae (Arpin 1969; Conifer pathogen Korf 1972, 1973). -
<I>Helvellaceae</I>
Persoonia 42, 2019: 186–204 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2019.42.07 Pindara revisited – evolution and generic limits in Helvellaceae K. Hansen1, T. Schumacher2, I. Skrede2, S. Huhtinen3, X.-H. Wang1,4 Key words Abstract The Helvellaceae encompasses taxa that produce some of the most elaborate apothecial forms, as well as hypogeous ascomata, in the class Pezizomycetes (Ascomycota). While the circumscription of the Helvella ascus croziers ceae is clarified, evolutionary relationships and generic limits within the family are debatable. A robust phylogeny Balsamia of the Helvellaceae, using an increased number of molecular characters from the LSU rDNA, RPB2 and EF-1α Barssia gene regions (4 299 bp) and a wide representative sampling, is presented here. Helvella s.lat. was shown to be Helvella aestivalis polyphyletic, because Helvella aestivalis formed a distant monophyletic group with hypogeous species of Balsamia Midotis and Barssia. All other species of Helvella formed a large group with the enigmatic Pindara (/Helvella) terrestris Pezizomycetes nested within it. The ear-shaped Wynnella constitutes an independent lineage and is recognised with the earlier name Midotis. The clade of the hypogeous Balsamia and Barssia, and H. aestivalis is coherent in the three-gene phylogeny, and considering the lack of phenotypic characters to distinguish Barssia from Balsamia we combine species of Barssia, along with H. aestivalis, in Balsamia. The closed/tuberiform, sparassoid H. astieri is shown to be a synonym of H. lactea; it is merely an incidental folded form of the saddle-shaped H. lactea. Pindara is a sister group to a restricted Helvella, i.e., excluding the /leucomelaena lineage, on a notably long branch.