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The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Phylogenetic Placement of Botryococcus Braunii (Trebouxiophyceae) and Botryococcus Sudeticus Isolate Utex 2629 (Chlorophyceae)1
J. Phycol. 40, 412–423 (2004) r 2004 Phycological Society of America DOI: 10.1046/j.1529-8817.2004.03173.x PHYLOGENETIC PLACEMENT OF BOTRYOCOCCUS BRAUNII (TREBOUXIOPHYCEAE) AND BOTRYOCOCCUS SUDETICUS ISOLATE UTEX 2629 (CHLOROPHYCEAE)1 Hoda H. Senousy, Gordon W. Beakes, and Ethan Hack2 School of Biology, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK The phylogenetic placement of four isolates of a potential source of renewable energy in the form of Botryococcus braunii Ku¨tzing and of Botryococcus hydrocarbon fuels (Metzger et al. 1991, Metzger and sudeticus Lemmermann isolate UTEX 2629 was Largeau 1999, Banerjee et al. 2002). The best known investigated using sequences of the nuclear small species is Botryococcus braunii Ku¨tzing. This organism subunit (18S) rRNA gene. The B. braunii isolates has a worldwide distribution in fresh and brackish represent the A (two isolates), B, and L chemical water and is occasionally found in salt water. Although races. One isolate of B. braunii (CCAP 807/1; A race) it grows relatively slowly, it sometimes forms massive has a group I intron at Escherichia coli position 1046 blooms (Metzger et al. 1991, Tyson 1995). Botryococcus and isolate UTEX 2629 has group I introns at E. coli braunii strains differ in the hydrocarbons that they positions 516 and 1512. The rRNA sequences were accumulate, and they have been classified into three aligned with 53 previously reported rRNA se- chemical races, called A, B, and L. Strains in the A race quences from members of the Chlorophyta, includ- accumulate alkadienes; strains in the B race accumulate ing one reported for B. -
Mannitol Biosynthesis in Algae : More Widespread and Diverse Than Previously Thought
This is a repository copy of Mannitol biosynthesis in algae : more widespread and diverse than previously thought. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/113250/ Version: Accepted Version Article: Tonon, Thierry orcid.org/0000-0002-1454-6018, McQueen Mason, Simon John orcid.org/0000-0002-6781-4768 and Li, Yi (2017) Mannitol biosynthesis in algae : more widespread and diverse than previously thought. New Phytologist. pp. 1573-1579. ISSN 1469-8137 https://doi.org/10.1111/nph.14358 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 Mannitol biosynthesis in algae: more widespread and diverse than previously thought. Thierry Tonon1,*, Yi Li1 and Simon McQueen-Mason1 1 Department of Biology, Centre for Novel Agricultural Products, University of York, Heslington, York, YO10 5DD, UK. * Author for correspondence: tel +44 1904328785; email [email protected] Key words: Algae, primary metabolism, mannitol biosynthesis, mannitol-1-phosphate dehydrogenase, mannitol-1-phosphatase, haloacid dehalogenase, histidine phosphatase, evolution of metabolic pathways. -
The Genome of Prasinoderma Coloniale Unveils the Existence of a Third Phylum Within Green Plants
Downloaded from orbit.dtu.dk on: Oct 10, 2021 The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng Total number of authors: 24 Published in: Nature Ecology & Evolution Link to article, DOI: 10.1038/s41559-020-1221-7 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., ... Liu, H. (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution, 4, 1220-1231. https://doi.org/10.1038/s41559-020-1221-7 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Photosynthetic Performance in Antarctic Lichens with Different Growth Forms Reflect the Diversity of Lichenized Algal Adaptation to Microhabitats
vol. 36, no. 2, pp. 175–188, 2015 doi: 10.1515/popore−2015−0012 Photosynthetic performance in Antarctic lichens with different growth forms reflect the diversity of lichenized algal adaptation to microhabitats Shunan CAO 1, Jie ZHANG 2, Hongyuan ZHENG 1,3, Chuanpeng LIU 4,* and Qiming ZHOU 4,5* 1 Key Laboratory for Polar Science SOA, Polar Research Institute of China, No.451 JinQiao Road, Pudong District, Shanghai 200136, China 2 Chinese National Antarctic & Arctic Data Centre, Polar Research Institute of China, No.451 JinQiao Road, Pudong District, Shanghai 200136, China 3 College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China 4 School of Life Science and Technology, Harbin Institute of Technology, 2 Yikuang Street, Harbin 150080, China <[email protected]> 5 Institute of Microbiology, Chinese Academy of Sciences, No.1–3, Beichen West Road, Beijing 100101, China <[email protected]> *corresponding authors Abstract: Lichens, as typical obligate associations between lichenized fungi and their photosynthetic partners, are dominant in Antarctica. Three Antarctic lichens, Ochrolechia frigida, Umbilicaria antarctica, and Usnea aurantiaco−atra with different growth forms, were sampled nearby the Great Wall Station, King George Island. Molecular data revealed that the photosynthetic algae in these three lichens were Trebouxia jamesii. The net photo− synthesis (Pn) of three individuals from these species, together with environmental factors such as light and temperature, were recorded by CO2 gas exchange measurements using a CI−340 portable photosynthetic system in situ. Differences between T(leaf) (the tempera− ture of the thalli) and T(air) (the air temperature) for these lichens were not consistent, which reflected that environment and the growth form of thalli could affect T(leaf) signifi− cantly. -
The Green Puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New Generic and Species Concept Among This Widely Distributed Genus
Phytotaxa 441 (2): 113–142 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.441.2.2 The green puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New generic and species concept among this widely distributed genus THOMAS PRÖSCHOLD1,3* & TATYANA DARIENKO2,4 1 University of Innsbruck, Research Department for Limnology, A-5310 Mondsee, Austria 2 University of Göttingen, Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Sammlung für Algenkulturen, D-37073 Göttingen, Germany 3 [email protected]; http://orcid.org/0000-0002-7858-0434 4 [email protected]; http://orcid.org/0000-0002-1957-0076 *Correspondence author Abstract Phylogenetic analyses have revealed that the traditional order Prasiolales, which contains filamentous and pseudoparenchy- matous genera Prasiola and Rosenvingiella with complex life cycle, also contains taxa of more simple morphology such as coccoids like Pseudochlorella and Edaphochlorella or rod-like organisms like Stichococcus and Pseudostichococcus (called Prasiola clade of the Trebouxiophyceae). Recent studies have shown a high biodiversity among these organisms and questioned the traditional generic and species concept. We studied 34 strains assigned as Stichococcus, Pseudostichococcus, Diplosphaera and Desmocococcus. Phylogenetic analyses using a multigene approach revealed that these strains belong to eight independent lineages within the Prasiola clade of the Trebouxiophyceae. For testing if these lineages represent genera, we studied the secondary structures of SSU and ITS rDNA sequences to find genetic synapomorphies. The secondary struc- ture of the V9 region of SSU is diagnostic to support the proposal for separation of eight genera. -
Proposal for Practical Multi-Kingdom Classification of Eukaryotes Based on Monophyly 2 and Comparable Divergence Time Criteria
bioRxiv preprint doi: https://doi.org/10.1101/240929; this version posted December 29, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Proposal for practical multi-kingdom classification of eukaryotes based on monophyly 2 and comparable divergence time criteria 3 Leho Tedersoo 4 Natural History Museum, University of Tartu, 14a Ravila, 50411 Tartu, Estonia 5 Contact: email: [email protected], tel: +372 56654986, twitter: @tedersoo 6 7 Key words: Taxonomy, Eukaryotes, subdomain, phylum, phylogenetic classification, 8 monophyletic groups, divergence time 9 Summary 10 Much of the ecological, taxonomic and biodiversity research relies on understanding of 11 phylogenetic relationships among organisms. There are multiple available classification 12 systems that all suffer from differences in naming, incompleteness, presence of multiple non- 13 monophyletic entities and poor correspondence of divergence times. These issues render 14 taxonomic comparisons across the main groups of eukaryotes and all life in general difficult 15 at best. By using the monophyly criterion, roughly comparable time of divergence and 16 information from multiple phylogenetic reconstructions, I propose an alternative 17 classification system for the domain Eukarya to improve hierarchical taxonomical 18 comparability for animals, plants, fungi and multiple protist groups. Following this rationale, 19 I propose 32 kingdoms of eukaryotes that are treated in 10 subdomains. These kingdoms are 20 further separated into 43, 115, 140 and 353 taxa at the level of subkingdom, phylum, 21 subphylum and class, respectively (http://dx.doi.org/10.15156/BIO/587483). -
Diversity and Evolution of Algae: Primary Endosymbiosis
CHAPTER TWO Diversity and Evolution of Algae: Primary Endosymbiosis Olivier De Clerck1, Kenny A. Bogaert, Frederik Leliaert Phycology Research Group, Biology Department, Ghent University, Krijgslaan 281 S8, 9000 Ghent, Belgium 1Corresponding author: E-mail: [email protected] Contents 1. Introduction 56 1.1. Early Evolution of Oxygenic Photosynthesis 56 1.2. Origin of Plastids: Primary Endosymbiosis 58 2. Red Algae 61 2.1. Red Algae Defined 61 2.2. Cyanidiophytes 63 2.3. Of Nori and Red Seaweed 64 3. Green Plants (Viridiplantae) 66 3.1. Green Plants Defined 66 3.2. Evolutionary History of Green Plants 67 3.3. Chlorophyta 68 3.4. Streptophyta and the Origin of Land Plants 72 4. Glaucophytes 74 5. Archaeplastida Genome Studies 75 Acknowledgements 76 References 76 Abstract Oxygenic photosynthesis, the chemical process whereby light energy powers the conversion of carbon dioxide into organic compounds and oxygen is released as a waste product, evolved in the anoxygenic ancestors of Cyanobacteria. Although there is still uncertainty about when precisely and how this came about, the gradual oxygenation of the Proterozoic oceans and atmosphere opened the path for aerobic organisms and ultimately eukaryotic cells to evolve. There is a general consensus that photosynthesis was acquired by eukaryotes through endosymbiosis, resulting in the enslavement of a cyanobacterium to become a plastid. Here, we give an update of the current understanding of the primary endosymbiotic event that gave rise to the Archaeplastida. In addition, we provide an overview of the diversity in the Rhodophyta, Glaucophyta and the Viridiplantae (excluding the Embryophyta) and highlight how genomic data are enabling us to understand the relationships and characteristics of algae emerging from this primary endosymbiotic event. -
Read Book Plant Ebook
PLANT PDF, EPUB, EBOOK David Burnie | 72 pages | 17 Jan 2011 | DK Publishing (Dorling Kindersley) | 9780756660352 | English | New York, NY, United States Plant PDF Book Plant physiology Materials. The integument becomes a seed coat, and the ovule develops into a seed. Hyacinth bulbs planted in pots now will flower early in the spring. Biotic factors also affect plant growth. See also assembly plant. Approximately plants are carnivorous , such as the Venus Flytrap Dionaea muscipula and sundew Drosera species. Retrieved 25 March Categories : Plants Kingdoms biology. Entry 1 of 2 : to put a seed, flower, or plant in the ground to grow : to fill an area with seeds, flowers, or plants : to put or place something in the ground plant. Plant Sale. Candytuft Read More Next. Cambridge: Cambridge University Press. The Chinese government banned qat earlier this year, and classified the plant as a dangerous narcotic. Terrorists planted a bomb in the bus station. Monographs in Systematic Botany. Browse planning application. They undergo closed mitosis without centrioles , and typically have mitochondria with flat cristae. The study of plant uses by people is called economic botany or ethnobotany. Mesostigmatophyceae Chlorokybophyceae Spirotaenia. From the Cambridge English Corpus. Translations of plant in Chinese Traditional. Synonyms for plant Synonyms: Verb drill , put in , seed , sow Synonyms: Noun factory , manufactory , mill , shop , works , workshop Visit the Thesaurus for More. Archived from the original on 14 April Historically, plants were treated as one of two kingdoms including all living things that were not animals , and all algae and fungi were treated as plants. Through the process of photosynthesis , most plants use the energy in sunlight to convert carbon dioxide from the atmosphere, plus water , into simple sugars. -
Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites
University of Rhode Island DigitalCommons@URI Open Access Dissertations 2017 Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites Eric Salomaki University of Rhode Island, [email protected] Follow this and additional works at: https://digitalcommons.uri.edu/oa_diss Recommended Citation Salomaki, Eric, "Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites" (2017). Open Access Dissertations. Paper 614. https://digitalcommons.uri.edu/oa_diss/614 This Dissertation is brought to you for free and open access by DigitalCommons@URI. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of DigitalCommons@URI. For more information, please contact [email protected]. ORGANELLAR GENOME EVOLUTION IN RED ALGAL PARASITES: DIFFERENCES IN ADELPHO- AND ALLOPARASITES BY ERIC SALOMAKI A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGICAL SCIENCES UNIVERSITY OF RHODE ISLAND 2017 DOCTOR OF PHILOSOPHY DISSERTATION OF ERIC SALOMAKI APPROVED: Dissertation Committee: Major Professor Christopher E. Lane Jason Kolbe Tatiana Rynearson Nasser H. Zawia DEAN OF THE GRADUATE SCHOOL UNIVERSITY OF RHODE ISLAND 2017 ABSTRACT Parasitism is a common life strategy throughout the eukaryotic tree of life. Many devastating human pathogens, including the causative agents of malaria and toxoplasmosis, have evolved from a photosynthetic ancestor. However, how an organism transitions from a photosynthetic to a parasitic life history strategy remains mostly unknown. Parasites have independently evolved dozens of times throughout the Florideophyceae (Rhodophyta), and often infect close relatives. This framework enables direct comparisons between autotrophs and parasites to investigate the early stages of parasite evolution. -
The Potential of Seaweeds As a Source of Functional Ingredients of Prebiotic and Antioxidant Value
antioxidants Review The Potential of Seaweeds as a Source of Functional Ingredients of Prebiotic and Antioxidant Value Andrea Gomez-Zavaglia 1 , Miguel A. Prieto Lage 2 , Cecilia Jimenez-Lopez 2 , Juan C. Mejuto 3 and Jesus Simal-Gandara 2,* 1 Center for Research and Development in Food Cryotechnology (CIDCA), CCT-CONICET La Plata, Calle 47 y 116, La Plata, Buenos Aires 1900, Argentina 2 Nutrition and Bromatology Group, Department of Analytical and Food Chemistry, Faculty of Science, University of Vigo – Ourense Campus, E32004 Ourense, Spain 3 Department of Physical Chemistry, Faculty of Science, University of Vigo – Ourense Campus, E32004 Ourense, Spain * Correspondence: [email protected] Received: 30 June 2019; Accepted: 8 September 2019; Published: 17 September 2019 Abstract: Two thirds of the world is covered by oceans, whose upper layer is inhabited by algae. This means that there is a large extension to obtain these photoautotrophic organisms. Algae have undergone a boom in recent years, with consequent discoveries and advances in this field. Algae are not only of high ecological value but also of great economic importance. Possible applications of algae are very diverse and include anti-biofilm activity, production of biofuels, bioremediation, as fertilizer, as fish feed, as food or food ingredients, in pharmacology (since they show antioxidant or contraceptive activities), in cosmeceutical formulation, and in such other applications as filters or for obtaining minerals. In this context, algae as food can be of help to maintain or even improve human health, and there is a growing interest in new products called functional foods, which can promote such a healthy state.