Lecture 2 Entropy and Mutual Information Instructor: Yichen Wang Ph.D./Associate Professor
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Distribution of Mutual Information
Distribution of Mutual Information Marcus Hutter IDSIA, Galleria 2, CH-6928 Manno-Lugano, Switzerland [email protected] http://www.idsia.ch/-marcus Abstract The mutual information of two random variables z and J with joint probabilities {7rij} is commonly used in learning Bayesian nets as well as in many other fields. The chances 7rij are usually estimated by the empirical sampling frequency nij In leading to a point es timate J(nij In) for the mutual information. To answer questions like "is J (nij In) consistent with zero?" or "what is the probability that the true mutual information is much larger than the point es timate?" one has to go beyond the point estimate. In the Bayesian framework one can answer these questions by utilizing a (second order) prior distribution p( 7r) comprising prior information about 7r. From the prior p(7r) one can compute the posterior p(7rln), from which the distribution p(Iln) of the mutual information can be cal culated. We derive reliable and quickly computable approximations for p(Iln). We concentrate on the mean, variance, skewness, and kurtosis, and non-informative priors. For the mean we also give an exact expression. Numerical issues and the range of validity are discussed. 1 Introduction The mutual information J (also called cross entropy) is a widely used information theoretic measure for the stochastic dependency of random variables [CT91, SooOO] . It is used, for instance, in learning Bayesian nets [Bun96, Hec98] , where stochasti cally dependent nodes shall be connected. The mutual information defined in (1) can be computed if the joint probabilities {7rij} of the two random variables z and J are known. -
Lecture 3: Entropy, Relative Entropy, and Mutual Information 1 Notation 2
EE376A/STATS376A Information Theory Lecture 3 - 01/16/2018 Lecture 3: Entropy, Relative Entropy, and Mutual Information Lecturer: Tsachy Weissman Scribe: Yicheng An, Melody Guan, Jacob Rebec, John Sholar In this lecture, we will introduce certain key measures of information, that play crucial roles in theoretical and operational characterizations throughout the course. These include the entropy, the mutual information, and the relative entropy. We will also exhibit some key properties exhibited by these information measures. 1 Notation A quick summary of the notation 1. Discrete Random Variable: U 2. Alphabet: U = fu1; u2; :::; uM g (An alphabet of size M) 3. Specific Value: u; u1; etc. For discrete random variables, we will write (interchangeably) P (U = u), PU (u) or most often just, p(u) Similarly, for a pair of random variables X; Y we write P (X = x j Y = y), PXjY (x j y) or p(x j y) 2 Entropy Definition 1. \Surprise" Function: 1 S(u) log (1) , p(u) A lower probability of u translates to a greater \surprise" that it occurs. Note here that we use log to mean log2 by default, rather than the natural log ln, as is typical in some other contexts. This is true throughout these notes: log is assumed to be log2 unless otherwise indicated. Definition 2. Entropy: Let U a discrete random variable taking values in alphabet U. The entropy of U is given by: 1 X H(U) [S(U)] = log = − log (p(U)) = − p(u) log p(u) (2) , E E p(U) E u Where U represents all u values possible to the variable. -
An Introduction to Information Theory
An Introduction to Information Theory Vahid Meghdadi reference : Elements of Information Theory by Cover and Thomas September 2007 Contents 1 Entropy 2 2 Joint and conditional entropy 4 3 Mutual information 5 4 Data Compression or Source Coding 6 5 Channel capacity 8 5.1 examples . 9 5.1.1 Noiseless binary channel . 9 5.1.2 Binary symmetric channel . 9 5.1.3 Binary erasure channel . 10 5.1.4 Two fold channel . 11 6 Differential entropy 12 6.1 Relation between differential and discrete entropy . 13 6.2 joint and conditional entropy . 13 6.3 Some properties . 14 7 The Gaussian channel 15 7.1 Capacity of Gaussian channel . 15 7.2 Band limited channel . 16 7.3 Parallel Gaussian channel . 18 8 Capacity of SIMO channel 19 9 Exercise (to be completed) 22 1 1 Entropy Entropy is a measure of uncertainty of a random variable. The uncertainty or the amount of information containing in a message (or in a particular realization of a random variable) is defined as the inverse of the logarithm of its probabil- ity: log(1=PX (x)). So, less likely outcome carries more information. Let X be a discrete random variable with alphabet X and probability mass function PX (x) = PrfX = xg, x 2 X . For convenience PX (x) will be denoted by p(x). The entropy of X is defined as follows: Definition 1. The entropy H(X) of a discrete random variable is defined by 1 H(X) = E log p(x) X 1 = p(x) log (1) p(x) x2X Entropy indicates the average information contained in X. -
Chapter 2: Entropy and Mutual Information
Chapter 2: Entropy and Mutual Information University of Illinois at Chicago ECE 534, Natasha Devroye Chapter 2 outline • Definitions • Entropy • Joint entropy, conditional entropy • Relative entropy, mutual information • Chain rules • Jensen’s inequality • Log-sum inequality • Data processing inequality • Fano’s inequality University of Illinois at Chicago ECE 534, Natasha Devroye Definitions A discrete random variable X takes on values x from the discrete alphabet . X The probability mass function (pmf) is described by p (x)=p(x) = Pr X = x , for x . X { } ∈ X University of Illinois at Chicago ECE 534, Natasha Devroye Copyright Cambridge University Press 2003. On-screen viewing permitted. Printing not permitted. http://www.cambridge.org/0521642981 You can buy this book for 30 pounds or $50. See http://www.inference.phy.cam.ac.uk/mackay/itila/ for links. 2 Probability, Entropy, and Inference Definitions Copyright Cambridge University Press 2003. On-screen viewing permitted. Printing not permitted. http://www.cambridge.org/0521642981 This chapter, and its sibling, Chapter 8, devote some time to notation. Just You can buy this book for 30 pounds or $50. See http://www.inference.phy.cam.ac.uk/mackay/itila/as the White Knight fordistinguished links. between the song, the name of the song, and what the name of the song was called (Carroll, 1998), we will sometimes 2.1: Probabilities and ensembles need to be careful to distinguish between a random variable, the v23alue of the i ai pi random variable, and the proposition that asserts that the random variable x has a particular value. In any particular chapter, however, I will use the most 1 a 0.0575 a Figure 2.2. -
Noisy Channel Coding
Noisy Channel Coding: Correlated Random Variables & Communication over a Noisy Channel Toni Hirvonen Helsinki University of Technology Laboratory of Acoustics and Audio Signal Processing [email protected] T-61.182 Special Course in Information Science II / Spring 2004 1 Contents • More entropy definitions { joint & conditional entropy { mutual information • Communication over a noisy channel { overview { information conveyed by a channel { noisy channel coding theorem 2 Joint Entropy Joint entropy of X; Y is: 1 H(X; Y ) = P (x; y) log P (x; y) xy X Y 2AXA Entropy is additive for independent random variables: H(X; Y ) = H(X) + H(Y ) iff P (x; y) = P (x)P (y) 3 Conditional Entropy Conditional entropy of X given Y is: 1 1 H(XjY ) = P (y) P (xjy) log = P (x; y) log P (xjy) P (xjy) y2A "x2A # y2A A XY XX XX Y It measures the average uncertainty (i.e. information content) that remains about x when y is known. 4 Mutual Information Mutual information between X and Y is: I(Y ; X) = I(X; Y ) = H(X) − H(XjY ) ≥ 0 It measures the average reduction in uncertainty about x that results from learning the value of y, or vice versa. Conditional mutual information between X and Y given Z is: I(Y ; XjZ) = H(XjZ) − H(XjY; Z) 5 Breakdown of Entropy Entropy relations: Chain rule of entropy: H(X; Y ) = H(X) + H(Y jX) = H(Y ) + H(XjY ) 6 Noisy Channel: Overview • Real-life communication channels are hopelessly noisy i.e. introduce transmission errors • However, a solution can be achieved { the aim of source coding is to remove redundancy from the source data -
A Statistical Framework for Neuroimaging Data Analysis Based on Mutual Information Estimated Via a Gaussian Copula
bioRxiv preprint doi: https://doi.org/10.1101/043745; this version posted October 25, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A statistical framework for neuroimaging data analysis based on mutual information estimated via a Gaussian copula Robin A. A. Ince1*, Bruno L. Giordano1, Christoph Kayser1, Guillaume A. Rousselet1, Joachim Gross1 and Philippe G. Schyns1 1 Institute of Neuroscience and Psychology, University of Glasgow, 58 Hillhead Street, Glasgow, G12 8QB, UK * Corresponding author: [email protected] +44 7939 203 596 Abstract We begin by reviewing the statistical framework of information theory as applicable to neuroimaging data analysis. A major factor hindering wider adoption of this framework in neuroimaging is the difficulty of estimating information theoretic quantities in practice. We present a novel estimation technique that combines the statistical theory of copulas with the closed form solution for the entropy of Gaussian variables. This results in a general, computationally efficient, flexible, and robust multivariate statistical framework that provides effect sizes on a common meaningful scale, allows for unified treatment of discrete, continuous, uni- and multi-dimensional variables, and enables direct comparisons of representations from behavioral and brain responses across any recording modality. We validate the use of this estimate as a statistical test within a neuroimaging context, considering both discrete stimulus classes and continuous stimulus features. We also present examples of analyses facilitated by these developments, including application of multivariate analyses to MEG planar magnetic field gradients, and pairwise temporal interactions in evoked EEG responses. -
Networked Distributed Source Coding
Networked distributed source coding Shizheng Li and Aditya Ramamoorthy Abstract The data sensed by differentsensors in a sensor network is typically corre- lated. A natural question is whether the data correlation can be exploited in innova- tive ways along with network information transfer techniques to design efficient and distributed schemes for the operation of such networks. This necessarily involves a coupling between the issues of compression and networked data transmission, that have usually been considered separately. In this work we review the basics of classi- cal distributed source coding and discuss some practical code design techniques for it. We argue that the network introduces several new dimensions to the problem of distributed source coding. The compression rates and the network information flow constrain each other in intricate ways. In particular, we show that network coding is often required for optimally combining distributed source coding and network information transfer and discuss the associated issues in detail. We also examine the problem of resource allocation in the context of distributed source coding over networks. 1 Introduction There are various instances of problems where correlated sources need to be trans- mitted over networks, e.g., a large scale sensor network deployed for temperature or humidity monitoring over a large field or for habitat monitoring in a jungle. This is an example of a network information transfer problem with correlated sources. A natural question is whether the data correlation can be exploited in innovative ways along with network information transfer techniques to design efficient and distributed schemes for the operation of such networks. This necessarily involves a Shizheng Li · Aditya Ramamoorthy Iowa State University, Ames, IA, U.S.A. -
On Measures of Entropy and Information
On Measures of Entropy and Information Tech. Note 009 v0.7 http://threeplusone.com/info Gavin E. Crooks 2018-09-22 Contents 5 Csiszar´ f-divergences 12 Csiszar´ f-divergence ................ 12 0 Notes on notation and nomenclature 2 Dual f-divergence .................. 12 Symmetric f-divergences .............. 12 1 Entropy 3 K-divergence ..................... 12 Entropy ........................ 3 Fidelity ........................ 12 Joint entropy ..................... 3 Marginal entropy .................. 3 Hellinger discrimination .............. 12 Conditional entropy ................. 3 Pearson divergence ................. 14 Neyman divergence ................. 14 2 Mutual information 3 LeCam discrimination ............... 14 Mutual information ................. 3 Skewed K-divergence ................ 14 Multivariate mutual information ......... 4 Alpha-Jensen-Shannon-entropy .......... 14 Interaction information ............... 5 Conditional mutual information ......... 5 6 Chernoff divergence 14 Binding information ................ 6 Chernoff divergence ................. 14 Residual entropy .................. 6 Chernoff coefficient ................. 14 Total correlation ................... 6 Renyi´ divergence .................. 15 Lautum information ................ 6 Alpha-divergence .................. 15 Uncertainty coefficient ............... 7 Cressie-Read divergence .............. 15 Tsallis divergence .................. 15 3 Relative entropy 7 Sharma-Mittal divergence ............. 15 Relative entropy ................... 7 Cross entropy -
Information Theory 1 Entropy 2 Mutual Information
CS769 Spring 2010 Advanced Natural Language Processing Information Theory Lecturer: Xiaojin Zhu [email protected] In this lecture we will learn about entropy, mutual information, KL-divergence, etc., which are useful concepts for information processing systems. 1 Entropy Entropy of a discrete distribution p(x) over the event space X is X H(p) = − p(x) log p(x). (1) x∈X When the log has base 2, entropy has unit bits. Properties: H(p) ≥ 0, with equality only if p is deterministic (use the fact 0 log 0 = 0). Entropy is the average number of 0/1 questions needed to describe an outcome from p(x) (the Twenty Questions game). Entropy is a concave function of p. 1 1 1 1 7 For example, let X = {x1, x2, x3, x4} and p(x1) = 2 , p(x2) = 4 , p(x3) = 8 , p(x4) = 8 . H(p) = 4 bits. This definition naturally extends to joint distributions. Assuming (x, y) ∼ p(x, y), X X H(p) = − p(x, y) log p(x, y). (2) x∈X y∈Y We sometimes write H(X) instead of H(p) with the understanding that p is the underlying distribution. The conditional entropy H(Y |X) is the amount of information needed to determine Y , if the other party knows X. X X X H(Y |X) = p(x)H(Y |X = x) = − p(x, y) log p(y|x). (3) x∈X x∈X y∈Y From above, we can derive the chain rule for entropy: H(X1:n) = H(X1) + H(X2|X1) + .. -
Information Theory and Maximum Entropy 8.1 Fundamentals of Information Theory
NEU 560: Statistical Modeling and Analysis of Neural Data Spring 2018 Lecture 8: Information Theory and Maximum Entropy Lecturer: Mike Morais Scribes: 8.1 Fundamentals of Information theory Information theory started with Claude Shannon's A mathematical theory of communication. The first building block was entropy, which he sought as a functional H(·) of probability densities with two desired properties: 1. Decreasing in P (X), such that if P (X1) < P (X2), then h(P (X1)) > h(P (X2)). 2. Independent variables add, such that if X and Y are independent, then H(P (X; Y )) = H(P (X)) + H(P (Y )). These are only satisfied for − log(·). Think of it as a \surprise" function. Definition 8.1 (Entropy) The entropy of a random variable is the amount of information needed to fully describe it; alternate interpretations: average number of yes/no questions needed to identify X, how uncertain you are about X? X H(X) = − P (X) log P (X) = −EX [log P (X)] (8.1) X Average information, surprise, or uncertainty are all somewhat parsimonious plain English analogies for entropy. There are a few ways to measure entropy for multiple variables; we'll use two, X and Y . Definition 8.2 (Conditional entropy) The conditional entropy of a random variable is the entropy of one random variable conditioned on knowledge of another random variable, on average. Alternative interpretations: the average number of yes/no questions needed to identify X given knowledge of Y , on average; or How uncertain you are about X if you know Y , on average? X X h X i H(X j Y ) = P (Y )[H(P (X j Y ))] = P (Y ) − P (X j Y ) log P (X j Y ) Y Y X X = = − P (X; Y ) log P (X j Y ) X;Y = −EX;Y [log P (X j Y )] (8.2) Definition 8.3 (Joint entropy) X H(X; Y ) = − P (X; Y ) log P (X; Y ) = −EX;Y [log P (X; Y )] (8.3) X;Y 8-1 8-2 Lecture 8: Information Theory and Maximum Entropy • Bayes' rule for entropy H(X1 j X2) = H(X2 j X1) + H(X1) − H(X2) (8.4) • Chain rule of entropies n X H(Xn;Xn−1; :::X1) = H(Xn j Xn−1; :::X1) (8.5) i=1 It can be useful to think about these interrelated concepts with a so-called information diagram. -
Fundamentals of Principal Component Analysis (PCA), Independent Component Analysis (ICA), and Independent Vector Analysis (IVA)
Advanced Signal Processing Group Fundamentals of Principal Component Analysis (PCA), Independent Component Analysis (ICA), and Independent Vector Analysis (IVA) Dr Mohsen Naqvi School of Electrical and Electronic Engineering, Newcastle University [email protected] UDRC Summer School Advanced Signal Processing Group Acknowledgement and Recommended text: Hyvarinen et al., Independent Component Analysis, Wiley, 2001 UDRC Summer School 2 Advanced Signal Processing Group Source Separation and Component Analysis Mixing Process Un-mixing Process 푥 푠1 1 푦1 H W Independent? 푠푛 푥푚 푦푛 Unknown Known Optimize Mixing Model: x = Hs Un-mixing Model: y = Wx = WHs =PDs UDRC Summer School 3 Advanced Signal Processing Group Principal Component Analysis (PCA) Orthogonal projection of data onto lower-dimension linear space: i. maximizes variance of projected data ii. minimizes mean squared distance between data point and projections UDRC Summer School 4 Advanced Signal Processing Group Principal Component Analysis (PCA) Example: 2-D Gaussian Data UDRC Summer School 5 Advanced Signal Processing Group Principal Component Analysis (PCA) Example: 1st PC in the direction of the largest variance UDRC Summer School 6 Advanced Signal Processing Group Principal Component Analysis (PCA) Example: 2nd PC in the direction of the second largest variance and each PC is orthogonal to other components. UDRC Summer School 7 Advanced Signal Processing Group Principal Component Analysis (PCA) • In PCA the redundancy is measured by correlation between data elements • Using -
On the Entropy of Sums
On the Entropy of Sums Mokshay Madiman Department of Statistics Yale University Email: [email protected] Abstract— It is shown that the entropy of a sum of independent II. PRELIMINARIES random vectors is a submodular set function, and upper bounds on the entropy of sums are obtained as a result in both discrete Let X1,X2,...,Xn be a collection of random variables and continuous settings. These inequalities complement the lower taking values in some linear space, so that addition is a bounds provided by the entropy power inequalities of Madiman well-defined operation. We assume that the joint distribu- and Barron (2007). As applications, new inequalities for the tion has a density f with respect to some reference mea- determinants of sums of positive-definite matrices are presented. sure. This allows the definition of the entropy of various random variables depending on X1,...,Xn. For instance, I. INTRODUCTION H(X1,X2,...,Xn) = −E[log f(X1,X2,...,Xn)]. There are the familiar two canonical cases: (a) the random variables Entropies of sums are not as well understood as joint are real-valued and possess a probability density function, or entropies. Indeed, for the joint entropy, there is an elaborate (b) they are discrete. In the former case, H represents the history of entropy inequalities starting with the chain rule of differential entropy, and in the latter case, H represents the Shannon, whose major developments include works of Han, discrete entropy. We simply call H the entropy in all cases, ˇ Shearer, Fujishige, Yeung, Matu´s, and others. The earlier part and where the distinction matters, the relevant assumption will of this work, involving so-called Shannon-type inequalities be made explicit.