HES1, Two Programs: Promoting the Quiescence and Proliferation of Adult Neural Stem Cells
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Homeobox Gene Expression Profile in Human Hematopoietic Multipotent
Leukemia (2003) 17, 1157–1163 & 2003 Nature Publishing Group All rights reserved 0887-6924/03 $25.00 www.nature.com/leu Homeobox gene expression profile in human hematopoietic multipotent stem cells and T-cell progenitors: implications for human T-cell development T Taghon1, K Thys1, M De Smedt1, F Weerkamp2, FJT Staal2, J Plum1 and G Leclercq1 1Department of Clinical Chemistry, Microbiology and Immunology, Ghent University Hospital, Ghent, Belgium; and 2Department of Immunology, Erasmus Medical Center, Rotterdam, The Netherlands Class I homeobox (HOX) genes comprise a large family of implicated in this transformation proces.14 The HOX-C locus transcription factors that have been implicated in normal and has been primarily implicated in lymphomas.15 malignant hematopoiesis. However, data on their expression or function during T-cell development is limited. Using degener- Hematopoietic cells are derived from stem cells that reside in ated RT-PCR and Affymetrix microarray analysis, we analyzed fetal liver (FL) in the embryo and in the adult bone marrow the expression pattern of this gene family in human multipotent (ABM), which have the unique ability to self-renew and thereby stem cells from fetal liver (FL) and adult bone marrow (ABM), provide a life-long supply of blood cells. T lymphocytes are a and in T-cell progenitors from child thymus. We show that FL specific type of hematopoietic cells that play a major role in the and ABM stem cells are similar in terms of HOX gene immune system. They develop through a well-defined order of expression, but significant differences were observed between differentiation steps in the thymus.16 Several transcription these two cell types and child thymocytes. -
The Role of Hes1 in Pancreas Development Expression, Interdependancy and Notch Signalling
FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN PhD thesis Cand.scient. Rasmus Klinck Department of Beta Cell Regeneration, Hagedorn Research Institute, and The PhD School of Science, Faculty of Science, University of Copenhagen, Denmark. The role of Hes1 in pancreas development Expression, Interdependancy and Notch signalling. Academic Advisors Dr. Olaf Nielsen, Department of Biology, Faculty of Science, University of Copenhagen – Denmark Dr. Mette C. Jørgensen, Department of Beta Cell Regeneration, Hagedorn Research Institute Denmark Submitted: 31/05/11 Cover picture: e10.5 mouse embryo expressing EGFP under the control of the Hes1 promoter manually stitched together from 15 complete image stacks. 2 Preface This Ph.D. thesis is based on experimental work performed in the Department of β Cell Regeneration at the Hagedorn Research Institute, Gentofte, Denmark from January 2008 to December 2010. The faculty supervisor on the project was Professor Olaf Nielsen, Department of Genetics, Faculty of Science, University of Copenhagen, and the project supervisor was Mette Christine Jørgensen, Ph.D., Chemist, Department of Beta Cell Regeneration at the Hagedorn Research Institute. This thesis is submitted in order to meet the requirements for obtaining a Ph.D. degree at the Faculty of Science, University of Copenhagen. The thesis is built around three scientific Manuscripts: Manuscript I: “A BAC transgenic Hes1-EGFP reporter reveals novel expression domains in mouse embryos” Submitted to Gene Expression Patterns Rasmus Klinck1, Ernst-Martin Füchtbauer2, Jonas Ahnfelt-Rønne1, Palle Serup1,Jan Nygaard Jensen1, Ole Dragsbæk Madsen1, Mette Christine Jørgensen1 1Department of Beta Cell Regeneration, Hagedorn Research Institute, Niels Steensens Vej 6, DK-2820 Gentofte, Denmark .2Department of Molecular Biology, Aarhus University, C. -
Notch Signaling in Breast Cancer: a Role in Drug Resistance
cells Review Notch Signaling in Breast Cancer: A Role in Drug Resistance McKenna BeLow 1 and Clodia Osipo 1,2,3,* 1 Integrated Cell Biology Program, Loyola University Chicago, Maywood, IL 60513, USA; [email protected] 2 Department of Cancer Biology, Loyola University Chicago, Maywood, IL 60513, USA 3 Department of Microbiology and Immunology, Loyola University Chicago, Maywood, IL 60513, USA * Correspondence: [email protected]; Tel.: +1-708-327-2372 Received: 12 September 2020; Accepted: 28 September 2020; Published: 29 September 2020 Abstract: Breast cancer is a heterogeneous disease that can be subdivided into unique molecular subtypes based on protein expression of the Estrogen Receptor, Progesterone Receptor, and/or the Human Epidermal Growth Factor Receptor 2. Therapeutic approaches are designed to inhibit these overexpressed receptors either by endocrine therapy, targeted therapies, or combinations with cytotoxic chemotherapy. However, a significant percentage of breast cancers are inherently resistant or acquire resistance to therapies, and mechanisms that promote resistance remain poorly understood. Notch signaling is an evolutionarily conserved signaling pathway that regulates cell fate, including survival and self-renewal of stem cells, proliferation, or differentiation. Deregulation of Notch signaling promotes resistance to targeted or cytotoxic therapies by enriching of a small population of resistant cells, referred to as breast cancer stem cells, within the bulk tumor; enhancing stem-like features during the process of de-differentiation of tumor cells; or promoting epithelial to mesenchymal transition. Preclinical studies have shown that targeting the Notch pathway can prevent or reverse resistance through reduction or elimination of breast cancer stem cells. However, Notch inhibitors have yet to be clinically approved for the treatment of breast cancer, mainly due to dose-limiting gastrointestinal toxicity. -
Activated Notch Counteracts Ikaros Tumor Suppression in Mouse and Human T-Cell Acute Lymphoblastic Leukemia
Leukemia (2015) 29, 1301–1311 © 2015 Macmillan Publishers Limited All rights reserved 0887-6924/15 www.nature.com/leu ORIGINAL ARTICLE Activated Notch counteracts Ikaros tumor suppression in mouse and human T-cell acute lymphoblastic leukemia MT Witkowski1,2,8, L Cimmino1,2,3,8,YHu4, T Trimarchi3, H Tagoh5, MD McKenzie1,2, SA Best1,2, L Tuohey1,2, TA Willson1,2, SL Nutt2,6, M Busslinger5, I Aifantis3, GK Smyth4,7 and RA Dickins1,2 Activating NOTCH1 mutations occur in ~ 60% of human T-cell acute lymphoblastic leukemias (T-ALLs), and mutations disrupting the transcription factor IKZF1 (IKAROS) occur in ~5% of cases. To investigate the regulatory interplay between these driver genes, we have used a novel transgenic RNA interference mouse model to produce primary T-ALLs driven by reversible Ikaros knockdown. Restoring endogenous Ikaros expression in established T-ALL in vivo acutely represses Notch1 and its oncogenic target genes including Myc, and in multiple primary leukemias causes disease regression. In contrast, leukemias expressing high levels of endogenous or engineered forms of activated intracellular Notch1 (ICN1) resembling those found in human T-ALL rapidly relapse following Ikaros restoration, indicating that ICN1 functionally antagonizes Ikaros in established disease. Furthermore, we find that IKAROS mRNA expression is significantly reduced in a cohort of primary human T-ALL patient samples with activating NOTCH1/ FBXW7 mutations, but is upregulated upon acute inhibition of aberrant NOTCH signaling across a panel of human T-ALL cell lines. These results demonstrate for the first time that aberrant NOTCH activity compromises IKAROS function in mouse and human T-ALL, and provide a potential explanation for the relative infrequency of IKAROS gene mutations in human T-ALL. -
Dependent Transcription Via IKKΑ in Breast Cancer Cells
Oncogene (2010) 29, 201–213 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 $32.00 www.nature.com/onc ORIGINAL ARTICLE Notch-1 activates estrogen receptor-a-dependent transcription via IKKa in breast cancer cells LHao1, P Rizzo1, C Osipo1, A Pannuti2, D Wyatt1, LW-K Cheung1,3, G Sonenshein4, BA Osborne5 and L Miele2 1Breast Cancer Program, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, IL, USA; 2University of Mississippi Cancer Institute, University of Mississippi Medical Center, Jackson, MS, USA; 3Department of Preventive Medicine and Bioinformatics Core, Loyola University Chicago, Maywood, IL, USA; 4Department of Biochemistry, Boston University, Boston, MA, USA and 5Department of Veterinary and Animal Sciences, University of Massachusetts at Amherst, Amherst, MA, USA Approximately 80% of breast cancers express the 1999; Nickoloff et al., 2003; Miele, 2006). Notch targets estrogen receptor-a (ERa) and are treated with anti- include members of the HES (Artavanis-Tsakonas et al., estrogens. Resistance to these agents is a major cause 1999), HERP (Iso et al., 2001) and HEY (Maier and of mortality. We have shown that estrogen inhibits Notch, Gessler, 2000) families, p21Cip/Waf (Rangarajan et al., whereas anti-estrogens or estrogen withdrawal activate 2001), c-Myc (Klinakis et al., 2006; Weng et al., 2006), Notch signaling. Combined inhibition of Notch and nuclear factor-kB subunits (Cheng et al., 2001), cyclin- estrogen signaling has synergistic effects in ERa-positive D1 (Ronchini and Capobianco, 2001) and cyclin-A breast cancer models. However, the mechanisms whereby (Baonza and Freeman, 2005). Mammals have four Notch-1 promotes the growth of ERa-positive breast Notch paralogs (Notch-1 through Notch-4) and five cancer cells are unknown. -
1Α,25‑Dihydroxyvitamin D3 Restrains Stem Cell‑Like Properties of Ovarian Cancer Cells by Enhancing Vitamin D Receptor and Suppressing CD44
ONCOLOGY REPORTS 41: 3393-3403, 2019 1α,25‑Dihydroxyvitamin D3 restrains stem cell‑like properties of ovarian cancer cells by enhancing vitamin D receptor and suppressing CD44 MINTAO JI1*, LIZHI LIU2*, YONGFENG HOU3 and BINGYAN LI1 1Department of Nutrition and Food Hygiene, Soochow University of Public Health, Suzhou, Jiangsu 215123; 2State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat‑Sen University Cancer Center, Guangzhou, Guangdong 510060; 3State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, P.R. China Received May 10, 2018; Accepted February 27, 2019 DOI: 10.3892/or.2019.7116 Abstract. Scientific evidence linking vitamin D with various the expression of CD44. These findings provide a novel insight cancer types is growing, but the effects of vitamin D on ovarian into the functions of vitamin D in diminishing the stemness of cancer stem cell‑like cells (CSCs) are largely unknown. The cancer CSCs. present study aimed to examine whether vitamin D was able to restrain the stemness of ovarian cancer. A side popula- Introduction tion (SP) from malignant ovarian surface epithelial cells was identified as CSCs, in vitro and in vivo. Furthermore, Ovarian cancer is the fourth most frequent gynecologic malig- 1α,25‑dihydroxyvitamin D3 [1α,25(OH)2D3] treatment nancy and the leading cause of tumor‑associated mortality inhibited the self‑renewal capacity of SP cells by decreasing in the USA (1). Epithelial ovarian cancer, which accounts the sphere formation rate and by suppressing the mRNA for ~90% of ovarian cancers, is generally diagnosed at an expression levels of cluster of differentiation CD44, NANOG, advanced stage (2). -
Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines
International Journal of Molecular Sciences Article Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines 1,2, 3, 1, Dóra Bojcsuk y , Gergely Nagy y and Bálint László Bálint * 1 Genomic Medicine and Bioinformatic Core Facility, Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; [email protected] 2 Doctoral School of Molecular Cell and Immune Biology, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary 3 Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; [email protected] * Correspondence: [email protected] These authors contributed equally to this work. y Received: 22 January 2020; Accepted: 25 February 2020; Published: 27 February 2020 Abstract: Super-enhancers (SEs) are clusters of highly active enhancers, regulating cell type-specific and disease-related genes, including oncogenes. The individual regulatory regions within SEs might be simultaneously bound by different transcription factors (TFs) and co-regulators, which together establish a chromatin environment conducting to effective transcription. While cells with distinct TF profiles can have different functions, how different cells control overlapping genetic programs remains a question. In this paper, we show that the construction of estrogen receptor alpha-driven SEs is tissue-specific, both collaborating TFs and the active SE components greatly differ between human breast cancer-derived MCF-7 and endometrial cancer-derived Ishikawa cells; nonetheless, SEs common to both cell lines have similar transcriptional outputs. These results delineate that despite the existence of a combinatorial code allowing alternative SE construction, a single master regulator might be able to determine the overall activity of SEs. -
Blastocyst Complementation Generates Exogenic Pancreas in Vivo in Apancreatic Cloned Pigs
Blastocyst complementation generates exogenic pancreas in vivo in apancreatic cloned pigs Hitomi Matsunaria,b,c,1, Hiroshi Nagashimaa,b,c,1,2, Masahito Watanabeb,c, Kazuhiro Umeyamab,c, Kazuaki Nakanoc, Masaki Nagayab,c, Toshihiro Kobayashia, Tomoyuki Yamaguchia, Ryo Sumazakid, Leonard A. Herzenberge,2, and Hiromitsu Nakauchia,f,2 aJapan Science and Technology Agency, Exploratory Research for Advanced Technology, Nakauchi Stem Cell and Organ Regeneration Project, Chiyoda-ku 102-0075, Japan; bMeiji University International Institute for Bio-Resource Research, Kawasaki 214-8571, Japan; cLaboratory of Developmental Engineering, Department of Life Sciences, School of Agriculture, Meiji University, Kawasaki 214-8571, Japan; dDepartment of Child Health, Faculty of Medicine, University of Tsukuba, Tsukuba 305-8575, Japan; eDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305; and fDivision of Stem Cell Therapy, Center for Stem Cell Biology and Medicine, Institute of Medical Science, University of Tokyo, Minato-ku 108-8639, Japan Contributed by Leonard A. Herzenberg, January 8, 2013 (sent for review December 23, 2012) In the field of regenerative medicine, one of the ultimate goals is to of Hes1 (hairy and enhancer of split 1) expression is critical for de- generate functioning organs from pluripotent cells, such as ES cells or velopment of the biliary system (5). Proceeding from the assumption induced pluripotent stem cells (PSCs). We have recently generated that overexpression of Hes1 under the promoter of Pdx1 (pancreatic functional pancreas and kidney from PSCs in pancreatogenesis- or and duodenal homeobox 1) inhibits pancreatic development, nephrogenesis-disabled mice, providing proof of principle for organo- we have generated Pdx1 promoter-Hes1 transgenic pigs with an genesis from PSCs in an embryo unable to form a specific organ. -
Molecular Regulation in Dopaminergic Neuron Development
International Journal of Molecular Sciences Review Molecular Regulation in Dopaminergic Neuron Development. Cues to Unveil Molecular Pathogenesis and Pharmacological Targets of Neurodegeneration Floriana Volpicelli 1 , Carla Perrone-Capano 1,2 , Gian Carlo Bellenchi 2,3, Luca Colucci-D’Amato 4,* and Umberto di Porzio 2 1 Department of Pharmacy, University of Naples Federico II, 80131 Naples, Italy; fl[email protected] (F.V.); [email protected] (C.P.C.) 2 Institute of Genetics and Biophysics “Adriano Buzzati Traverso”, CNR, 80131 Rome, Italy; [email protected] (G.C.B.); [email protected] (U.d.P.) 3 Department of Systems Medicine, University of Rome Tor Vergata, 00133 Rome, Italy 4 Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, University of Campania “Luigi Vanvitelli”, 81100 Caserta, Italy * Correspondence: [email protected]; Tel.: +39-0823-274577 Received: 28 April 2020; Accepted: 1 June 2020; Published: 3 June 2020 Abstract: The relatively few dopaminergic neurons in the mammalian brain are mostly located in the midbrain and regulate many important neural functions, including motor integration, cognition, emotive behaviors and reward. Therefore, alteration of their function or degeneration leads to severe neurological and neuropsychiatric diseases. Unraveling the mechanisms of midbrain dopaminergic (mDA) phenotype induction and maturation and elucidating the role of the gene network involved in the development and maintenance of these neurons is of pivotal importance to rescue or substitute these cells in order to restore dopaminergic functions. Recently, in addition to morphogens and transcription factors, microRNAs have been identified as critical players to confer mDA identity. The elucidation of the gene network involved in mDA neuron development and function will be crucial to identify early changes of mDA neurons that occur in pre-symptomatic pathological conditions, such as Parkinson’s disease. -
The Notch Target Hes1 Directly Modulates Gli1 Expression and Hedgehog Signaling: a Potential Mechanism of Therapeutic Resistance
Clinical Cancer Cancer Therapy: Preclinical Research The Notch Target Hes1 Directly Modulates Gli1 Expression and Hedgehog Signaling: A Potential Mechanism of Therapeutic Resistance Karisa C. Schreck1,2,5, Pete Taylor6, Luigi Marchionni4, Vidya Gopalakrishnan6, Eli E. Bar2, Nicholas Gaiano1,3,5, and Charles G. Eberhart2,4 Abstract Purpose: Multiple developmental pathways including Notch, Hedgehog, and Wnt are active in malignant brain tumors such as medulloblastoma and glioblastoma (GBM). This raises the possibility that tumors might compensate for therapy directed against one pathway by upregulating a different one. We investigated whether brain tumors show resistance to therapies against Notch, and whether targeting multiple pathways simultaneously would kill brain tumor cells more effectively than monotherapy. Experimental Design: We used GBM neurosphere lines to investigate the effects of a gamma-secretase inhibitor (MRK-003) on tumor growth, and chromatin immunoprecipitation to study the regulation of other genes by Notch targets. We also evaluated the effect of combined therapy with a Hedgehog inhibitor (cyclopamine) in GBM and medulloblastoma lines, and in primary human GBM cultures. Results: GBM cells are at least partially resistant to long-term MRK-003 treatment, despite ongoing Notch pathway suppression, and show concomitant upregulation of Wnt and Hedgehog activity. The Notch target Hes1, a repressive transcription factor, bound the Gli1 first intron, and may inhibit its expression. Similar results were observed in a melanoma-derived cell line. Targeting Notch and Hedgehog simultaneously induced apoptosis, decreased cell growth, and inhibited colony-forming ability more dramatically than monotherapy. Low-passage neurospheres isolated from freshly resected human GBMs were also highly susceptible to coinhibition of the two pathways, indicating that targeting multiple developmental pathways can be more effective than monotherapy at eliminating GBM-derived cells. -
Notch Controls Multiple Pancreatic Cell Fate Regulators Through Direct Hes1-Mediated Repression
bioRxiv preprint doi: https://doi.org/10.1101/336305; this version posted June 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Notch Controls Multiple Pancreatic Cell Fate Regulators Through Direct Hes1-mediated Repression by Kristian H. de Lichtenberg1, Philip A. Seymour1, Mette C. Jørgensen1, Yung-Hae Kim1, Anne Grapin-Botton1, Mark A. Magnuson2, Nikolina Nakic3,4, Jorge Ferrer3, Palle Serup1* 1 Novo Nordisk Foundation Center for Stem Cell Biology (Danstem), University of Copenhagen, Denmark. 2 Center for Stem Cell Biology, Vanderbilt University, Tennessee, USA. 3 Section on Epigenetics and Disease, Imperial College London, UK. 4 Current Address: GSK, Stevenage, UK. *Corresponding Author: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/336305; this version posted June 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Notch signaling and its effector Hes1 regulate multiple cell fate choices in the developing pancreas, but few direct target genes are known. Here we use transcriptome analyses combined with chromatin immunoprecipitation with next-generation sequencing (ChIP-seq) to identify direct target genes of Hes1. ChIP-seq analysis of endogenous Hes1 in 266-6 cells, a model of multipotent pancreatic progenitor cells, revealed high-confidence peaks associated with 354 genes. Among these were genes important for tip/trunk segregation such as Ptf1a and Nkx6-1, genes involved in endocrine differentiation such as Insm1 and Dll4, and genes encoding non-pancreatic basic-Helic-Loop-Helix (bHLH) factors such as Neurog2 and Ascl1. -
2D3-Induced Genes in Osteoblasts
THE REGULATION AND FUNCTION OF 1,25-DIHYDROXYVITAMIN D3- INDUCED GENES IN OSTEOBLASTS by AMELIA LOUISE MAPLE SUTTON Submitted in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Advisor: Dr. Paul N. MacDonald Department of Pharmacology CASE WESTERN RESERVE UNIVERSITY August 2005 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of ______________________________________________________ candidate for the ________________________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. I would like to dedicate this dissertation to my amazing mother. This is the very least I can do to say thank you to the woman who has dedicated her entire life to me. TABLE OF CONTENTS Dedication ii Table of Contents iii List of Tables iv List of Figures v Acknowledgments vii Abstract xiv Chapter I Introduction 1 Chapter II The 1,25(OH)2D3-regulated transcription factor MN1 64 stimulates VDR-medicated transcription and inhibits osteoblast proliferation Chapter III The 1,25(OH)2D3-induced transcription factor 98 CCAAT/enhancer-binding protein-β cooperates with VDR