Serum Amyloid a – a Review George H
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Cellular and Plasma Proteomic Determinants of COVID-19 and Non-COVID-19 Pulmonary Diseases Relative to Healthy Aging
RESOURCE https://doi.org/10.1038/s43587-021-00067-x Cellular and plasma proteomic determinants of COVID-19 and non-COVID-19 pulmonary diseases relative to healthy aging Laura Arthur1,8, Ekaterina Esaulova 1,8, Denis A. Mogilenko 1, Petr Tsurinov1,2, Samantha Burdess1, Anwesha Laha1, Rachel Presti 3, Brian Goetz4, Mark A. Watson1, Charles W. Goss5, Christina A. Gurnett6, Philip A. Mudd 7, Courtney Beers4, Jane A. O’Halloran3 and Maxim N. Artyomov1 ✉ We examine the cellular and soluble determinants of coronavirus disease 2019 (COVID-19) relative to aging by performing mass cytometry in parallel with clinical blood testing and plasma proteomic profiling of ~4,700 proteins from 71 individuals with pul- monary disease and 148 healthy donors (25–80 years old). Distinct cell populations were associated with age (GZMK+CD8+ T cells and CD25low CD4+ T cells) and with COVID-19 (TBET−EOMES− CD4+ T cells, HLA-DR+CD38+ CD8+ T cells and CD27+CD38+ B cells). A unique population of TBET+EOMES+ CD4+ T cells was associated with individuals with COVID-19 who experienced moderate, rather than severe or lethal, disease. Disease severity correlated with blood creatinine and urea nitrogen levels. Proteomics revealed a major impact of age on the disease-associated plasma signatures and highlighted the divergent contri- bution of hepatocyte and muscle secretomes to COVID-19 plasma proteins. Aging plasma was enriched in matrisome proteins and heart/aorta smooth muscle cell-specific proteins. These findings reveal age-specific and disease-specific changes associ- ated with COVID-19, and potential soluble mediators of the physiological impact of COVID-19. -
Influence of Serum Amyloid a (SAA1) And
Influence of Serum Amyloid A (SAA1) and SAA2 Gene Polymorphisms on Renal Amyloidosis, and on SAA/ C-Reactive Protein Values in Patients with Familial Mediterranean Fever in the Turkish Population AYSIN BAKKALOGLU, ALI DUZOVA, SEZA OZEN, BANU BALCI, NESRIN BESBAS, REZAN TOPALOGLU, FATIH OZALTIN, and ENGIN YILMAZ ABSTRACT. Objective. To evaluate the effect of serum amyloid A (SAA) 1 and SAA2 gene polymorphisms on SAA levels and renal amyloidosis in Turkish patients with familial Mediterranean fever (FMF). Methods. SAA1 and SAA2 gene polymorphisms and SAA levels were determined in 74 patients with FMF (39 female, 35 male; median age 11.5 yrs, range 1.0–23.0). All patients were on colchicine therapy. SAA1 and SAA2 gene polymorphisms were analyzed using polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP). SAA and C-reactive protein (CRP) values were measured and SAA/CRP values were calculated. Results. The median SAA level was 75 ng/ml (range 10.2–1500). SAA1 gene polymorphisms were: α/α genotype in 23 patients (31.1%), α/ß genotype in 30 patients (40.5%), α/γ genotype in one patient (1.4 %), ß/ß genotype in 14 patients (18.9%), ß/γ genotype in 5 patients (6.8 %), and γ/γ geno- type in one patient (1.4%). Of the 23 patients who had α/α genotype for the SAA1 polymorphism, 7 patients had developed renal amyloidosis (30.4%) compared to only one patient without this geno- type (1/51; 2.0%); p < 0.001. SAA2 had no effect on renal amyloidosis. SAA1 and SAA2 genotypes had no significant effect on SAA levels. -
A A20, 156–157, 386, 423 AB12, 326 ABCA1 Transporter, 395 Abelson
Index A AGI-5198, 218 A20, 156–157, 386, 423 AhR-KO mice, 417 AB12, 326 AIM2, 85 ABCA1 transporter, 395 Aiolos (IKZF3), 179 Abelson murine leukemia virus (A-MuLV), AKAP450, 204 165, 193 Akt, 424, 445 ABL, 472 Alarmin, 119–120, 430 ABO blood type, 98 Aldehyde dehydrogenase 1 (ALDH1), 187 Abscopal effect, 463 ALK1, 243 ACE-KO mice, 410 Allo-antibodies, 100 Acetylcholine (Ach), 127 Allogenic, 306 Acetyl-CoA (coenzyme A), 211 Allograft, 306 Activated protein C (rhAPC), 454 α-ketoglutarate (α-KG), 215 Adalimumab, 356 α-linoleic acid (ALA), 458 ADAM10, 109, 263, 335 α 1, 3 galactosyltransferase, 98 ADAM12, 264, 416 α 1, 3 N-acetylgalactosaminyl (GalNAc) ADAM15, 264 transferase, 98 ADAM17, 152, 264, 275 α7 nAchR, 397 ADAMTS1, 264, 265 α smooth muscle actin (α-SMA), 235 ADAMTS2, 265 Alpha2 plasmin inhibitor (α2PI), 59 ADAMTS9, 265 Alzheimer’s disease, 110 ADAMTS13, 265 AMD3100, 360, 405 Adenine nucleotide translocase (ANT), 206 Amelanotic melanoma cells, 454 Adenylate cyclase, 397 American Society of Clinical Oncology Adherens junction (AJ), 42, 249, 473 (ASCO), 437 Adhesion, 42 Ammonia, 363 Adipose tissue, 332, 383–384 AMP-activated protein kinase (AMPK), 214, A Disintegrin and Metalloprotease (ADAM), 216, 373 253 Amyloid fibrils, 110 Adjuvant, 122 Amyloid precursor protein (APP), 110 Advanced bladder cancer, 189 Anakinra (IL-1ra), 154 Advanced glycation end product (AGE), 109 Anaphylatoxins, 30 AE3-208, 429, 458 Anchorage-independent three-dimensional Aggregation, 59 growth, 194 Aggresome, 393 Androgen receptor (AR), 224 © Springer Japan 2016 -
BMC Medical Genomics Biomed Central
BMC Medical Genomics BioMed Central Research article Open Access Hepatic inflammation mediated by hepatitis C virus core protein is ameliorated by blocking complement activation Ming-Ling Chang*1, Chau-Ting Yeh1, Deng-Yn Lin1, Yu-Pin Ho1, Chen- Ming Hsu1 and D Montgomery Bissell2 Address: 1Liver Research Center and Department of Hepatogastroenterology, Chang Gung Memorial Hospital; Chang Gung University, College of Medicine, Taoyuan, Taiwan, Republic of China and 2Liver Center and Department of Medicine, University of California, San Francisco, San Francisco, CA, USA Email: Ming-Ling Chang* - [email protected]; Chau-Ting Yeh - [email protected]; Deng- Yn Lin - [email protected]; Yu-Pin Ho - [email protected]; Chen-Ming Hsu - [email protected]; D Montgomery Bissell - [email protected] * Corresponding author Published: 8 August 2009 Received: 11 July 2008 Accepted: 8 August 2009 BMC Medical Genomics 2009, 2:51 doi:10.1186/1755-8794-2-51 This article is available from: http://www.biomedcentral.com/1755-8794/2/51 © 2009 Chang et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: The pathogenesis of inflammation and fibrosis in chronic hepatitis C virus (HCV) infection remains unclear. Transgenic mice with constitutive HCV core over-expression display steatosis only. While the reasons for this are unclear, it may be important that core protein production in these models begins during gestation, in contrast to human hepatitis C virus infection, which occurs post-natally and typically in adults. -
Mass Spectrometric Determination of the Effect of Surface Deactivation on Membranes Used for In-Situ Sampling of Cerebrospinal Fluid (CSF)
Supplementary Materials Mass Spectrometric Determination of the Effect of Surface Deactivation on Membranes Used for In-Situ Sampling of Cerebrospinal Fluid (CSF) Torgny Undin 1, Andreas P Dahlin 2, Jonas Bergquist 1, and Sara Bergström Lind 1,* 1 Department of Chemistry-BMC, Analytical Chemistry, Uppsala University, PO Box 599, SE-751 24 Uppsala, Sweden; [email protected] (T.U.); [email protected] (J.B.) 2 Department of Engineering Sciences, Uppsala University, PO Box 534, SE-751 21 Uppsala, Sweden; [email protected] * Correspondence: [email protected]; Tel.: +46-18-4713693 Supplementary Table Table A Heat map of identified adsorbed proteins on coated membranes in group A. A time resolved map of all identified proteins that adsorbs to the surface providing deeper information about the adsorption behavior of the individual proteins compared to the more schematic Fig. 2. The three colors in the heat map indicate zero (white), one (light green) or two or more (dark green) unique peptides identified for a particular protein. A protein must be identified by two peptides at least one time point to be considered identified. Protein 15 30 60 120 240 480 Complement C3 OS=Homo sapiens GN=C3 PE=1 SV=2 - [CO3_HUMAN] 2 2 2 2 2 2 Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 - [ALBU_HUMAN] 2 2 2 2 2 2 Coagulation factor V OS=Homo sapiens GN=F5 PE=1 SV=4 - [FA5_HUMAN] 2 2 2 2 2 2 Complement C4-A OS=Homo sapiens GN=C4A PE=1 SV=2 - [CO4A_HUMAN] 2 2 2 2 2 2 Clusterin OS=Homo sapiens GN=CLU PE=1 SV=1 - [CLUS_HUMAN] 2 2 2 2 2 2 Fibulin-1 -
Acute-Phase Serum Amyloid a Protein and Its Implication in the Development of Type 2 Diabetes in the KORA S4/F4 Study
Cardiovascular and Metabolic Risk ORIGINAL ARTICLE Acute-Phase Serum Amyloid A Protein and Its Implication in the Development of Type 2 Diabetes in the KORA S4/F4 Study 1,2 6 CAROLA MARZI, MPH H.-ERICH WICHMANN, MD, PHD ype 2 diabetes is preceded by a 2,3 4,7 CORNELIA HUTH, PHD MICHAEL RODEN, MD 4 2,3 differential activation of compo- CHRISTIAN HERDER, PHD ANNETTE PETERS, PHD T 2,3 1,2 nents of the innate immune system JENS BAUMERT, PHD HARALD GRALLERT, PHD 2,3 8 (1,2). Serum amyloid A (SAA) is a sensi- BARBARA THORAND, PHD WOLFGANG KOENIG, MD 5 1,9 tive marker of the acute inflammatory WOLFGANG RATHMANN, MD THOMAS ILLIG, PHD 2,3 CHRISTA MEISINGER, MD state. Its acute-phase isoform (A-SAA) is up-regulated up to 1,000-fold in response to inflammatory stimuli such as trauma, – OBJECTIVEdWe sought to investigate whether elevated levels of acute-phase serum amyloid infection, injury, and stress (3 5). The A (A-SAA) protein precede the onset of type 2 diabetes independently of other risk factors, high inductive capacity, along with the including parameters of glucose metabolism. fact that genes and proteins are highly conserved throughout the evolution of RESEARCH DESIGN AND METHODSd Within the population-based Cooperative vertebrates and invertebrates, suggests Health Research in the Region of Augsburg (KORA) S4 study, we measured A-SAA concentrations that A-SAA plays a key role in pathogen in 836 initially nondiabetic subjects (55–74 years of age) without clinically overt inflammation who participated in a 7-year follow-up examination including an oral glucose tolerance test. -
Amyloid Goiter in Familial Mediterranean Fever: Description of 42 Cases from a French Cohort and from Literature Review
Journal of Clinical Medicine Article Amyloid Goiter in Familial Mediterranean Fever: Description of 42 Cases from a French Cohort and from Literature Review Hélène Vergneault 1 , Alexandre Terré 1, David Buob 2,†, Camille Buffet 3 , Anael Dumont 4, Samuel Ardois 5, Léa Savey 1, Agathe Pardon 6,‡, Pierre-Antoine Michel 7, Jean-Jacques Boffa 7,†, Gilles Grateau 1,† and Sophie Georgin-Lavialle 1,*,† 1 Internal Medicine Department and National Reference Center for Autoinflammatory Diseases and Inflammatory Amyloidosis (CEREMAIA), APHP, Tenon Hospital, Sorbonne University, 4 rue de la Chine, 75020 Paris, France; [email protected] (H.V.); [email protected] (A.T.); [email protected] (L.S.); [email protected] (G.G.) 2 Department of Pathology, APHP, Tenon Hospital, Sorbonne University, 4 rue de la Chine, 75020 Paris, France; [email protected] 3 Thyroid Pathologies and Endocrine Tumor Department, APHP, Pitié-Salpêtrière Hospital, Sorbonne University, 47-83 Boulevard de l’Hôpital, 75013 Paris, France; [email protected] 4 Department of Internal Medicine, Caen University Hospital, Avenue de la Côte de Nacre, 14000 Caen, France; [email protected] 5 Department of Internal Medecine, Rennes Medical University, 2 rue Henri le Guilloux, 35000 Rennes, France; [email protected] 6 Dialysis Center, CH Sud Francilien, 40 Avenue Serge Dassault, 91100 Corbeil-Essonnes, France; [email protected] 7 Citation: Vergneault, H.; Terré, A.; Department of Nephrology, APHP, Tenon Hospital, 4 rue de la Chine, 75020 Paris, France; [email protected] (P.-A.M.); [email protected] (J.-J.B.) Buob, D.; Buffet, C.; Dumont, A.; * Correspondence: [email protected]; Tel.: +33-156016077 Ardois, S.; Savey, L.; Pardon, A.; † Groupe de Recherche Clinique amylose AA Sorbonne Université- GRAASU. -
Gene Expression Signature for Biliary Atresia and a Role for Interleukin-8
SUPPLEMENTARY “PATIENTS AND METHODS” “Gene expression signature for biliary atresia and a role for Interleukin-8 in pathogenesis of experimental disease” Bessho K, et al. PATIENTS AND METHODS Patients. Liver biopsies, serum samples and clinical data were obtained from infants with cholestasis enrolled into a prospective study (ClinicalTrials.gov Identifier: NCT00061828) of the NIDDK-funded Childhood Liver Disease Research and Education Network (www.childrennetwork.org) or from infants evaluated at Cincinnati Children’s Hospital Medical Center. For subjects with biliary atresia (BA), liver biopsies were obtained from 64 infants during the preoperative workup or at the time of intraoperative cholangiogram, with ages ranging from 22-169 days after birth (Supplementary Table 7). For subjects with intrahepatic cholestasis (serving as diseased controls, and referred to as non- BA), liver biopsy samples were obtained percutaneously or intraoperatively from 14 infants at the time of diagnostic evaluation, with ages ranging from 19-189 days. Their diagnosis were Alagille syndrome (N=1), multidrug resistance protein-3 deficiency (N=2), alpha-1-antitrypsin deficiency (N=2) and cholestasis with unknown etiology (N=9) (Supplementary Table 7). Representative liver biopsy photomicrographs are shown in Supplementary Figure 6A-D. A third group of normal controls (NC) consisted of liver biopsy samples obtained from 7 deceased-donor children aged 22-42 months as described previously (1). This group serves as a reference cohort, with the median levels of gene expression used to normalize gene expression across all patients in the BA and non-BA groups. This greatly facilitates the visual identification of key differences in gene expression levels between BA and non-BA groups. -
The Expression of Genes Contributing to Pancreatic Adenocarcinoma Progression Is Influenced by the Respective Environment – Sagini Et Al
The expression of genes contributing to pancreatic adenocarcinoma progression is influenced by the respective environment – Sagini et al Supplementary Figure 1: Target genes regulated by TGM2. Figure represents 24 genes regulated by TGM2, which were obtained from Ingenuity Pathway Analysis. As indicated, 9 genes (marked red) are down-regulated by TGM2. On the contrary, 15 genes (marked red) are up-regulated by TGM2. Supplementary Table 1: Functional annotations of genes from Suit2-007 cells growing in pancreatic environment Categoriesa Diseases or p-Valuec Predicted Activation Number of genesf Functions activationd Z-scoree Annotationb Cell movement Cell movement 1,56E-11 increased 2,199 LAMB3, CEACAM6, CCL20, AGR2, MUC1, CXCL1, LAMA3, LCN2, COL17A1, CXCL8, AIF1, MMP7, CEMIP, JUP, SOD2, S100A4, PDGFA, NDRG1, SGK1, IGFBP3, DDR1, IL1A, CDKN1A, NREP, SEMA3E SERPINA3, SDC4, ALPP, CX3CL1, NFKBIA, ANXA3, CDH1, CDCP1, CRYAB, TUBB2B, FOXQ1, SLPI, F3, GRINA, ITGA2, ARPIN/C15orf38- AP3S2, SPTLC1, IL10, TSC22D3, LAMC2, TCAF1, CDH3, MX1, LEP, ZC3H12A, PMP22, IL32, FAM83H, EFNA1, PATJ, CEBPB, SERPINA5, PTK6, EPHB6, JUND, TNFSF14, ERBB3, TNFRSF25, FCAR, CXCL16, HLA-A, CEACAM1, FAT1, AHR, CSF2RA, CLDN7, MAPK13, FERMT1, TCAF2, MST1R, CD99, PTP4A2, PHLDA1, DEFB1, RHOB, TNFSF15, CD44, CSF2, SERPINB5, TGM2, SRC, ITGA6, TNC, HNRNPA2B1, RHOD, SKI, KISS1, TACSTD2, GNAI2, CXCL2, NFKB2, TAGLN2, TNF, CD74, PTPRK, STAT3, ARHGAP21, VEGFA, MYH9, SAA1, F11R, PDCD4, IQGAP1, DCN, MAPK8IP3, STC1, ADAM15, LTBP2, HOOK1, CST3, EPHA1, TIMP2, LPAR2, CORO1A, CLDN3, MYO1C, -
Human Serum Amyloid a (SAA)
Clinical and Inflammation Research Area Human serum amyloid A (SAA) erum amyloid A recombinant SAA as well as purified endogenous apolipoprotein SAA has a tendency to aggregate and form oligomers Sfamily consists of (4-6). Presumably, the association of SAA molecules three members that in is mediated by amino acid residues located within human beings are cod- α-helix regions 1 (residues 2-8) and 3 (residues ed by different genes: 52-59) (4). SAA1, SAA2, and SAA4 (reviewed in 1-3). SAA1 The biological function of SAA and SAA2 are so-called acute phase isoforms. The biological function of SAA in inflammation is Their expression is in- unclear. It has been suggested that SAA is involved creased in response to in the recycling of cholesterol from damaged tissues. inflammation. SAA4 is It might play the role of a signaling molecule that a constitutive isoform, redirects HDL particles to activated macrophages the expression of which does not change during an and mediates the removal of stored cholesterol from acute-phase response. In addition, one more related them. Released cholesterol is then transferred to HDL gene (SAA3) has been identified, although this gene to be used again in the membranes of new cells that are is not expressed in human beings. required during acute inflammation and tissue repair (7). Besides that, published studies demonstrate Biochemical properties of SAA that recombinant SAA exhibits significant proinflammatory activity by inducing the synthesis SAA1 and SAA2 are synthesized in the liver of several cytokines and promoting chemotaxis for and secreted to the blood. When in the blood, monocytes and neutrophils in vitro (1, 8). -
Serum Amyloid a Binds to Gibrin(Ogen), Promoting Fibrin Amyloid Formation Martin J
University of Kentucky UKnowledge Physiology Faculty Publications Physiology 2-28-2019 Serum Amyloid A Binds to Gibrin(ogen), Promoting Fibrin Amyloid Formation Martin J. Page Stellenbosch University, South Africa Greig J. A. Thomson Stellenbosch University, South Africa J. Massimo Nunes Stellenbosch University, South Africa Anna-Mart Engelbrecht Stellenbosch University, South Africa Theo A. Nell Stellenbosch University, South Africa See next page for additional authors Right click to open a feedback form in a new tab to let us know how this document benefits oy u. Follow this and additional works at: https://uknowledge.uky.edu/physiology_facpub Part of the Cell and Developmental Biology Commons, and the Physiology Commons Repository Citation Page, Martin J.; Thomson, Greig J. A.; Nunes, J. Massimo; Engelbrecht, Anna-Mart; Nell, Theo A.; de Villiers, Willem J. S.; de Beer, Maria C.; Engelbrecht, Lize; Kell, Douglas B.; and Pretorius, Etheresia, "Serum Amyloid A Binds to Gibrin(ogen), Promoting Fibrin Amyloid Formation" (2019). Physiology Faculty Publications. 144. https://uknowledge.uky.edu/physiology_facpub/144 This Article is brought to you for free and open access by the Physiology at UKnowledge. It has been accepted for inclusion in Physiology Faculty Publications by an authorized administrator of UKnowledge. For more information, please contact [email protected]. Authors Martin J. Page, Greig J. A. Thomson, J. Massimo Nunes, Anna-Mart Engelbrecht, Theo A. Nell, Willem J. S. de Villiers, Maria C. de Beer, Lize Engelbrecht, Douglas B. Kell, and Etheresia Pretorius Serum Amyloid A Binds to Gibrin(ogen), Promoting Fibrin Amyloid Formation Notes/Citation Information Published in Scientific Reports, v. 9, article no. -
Kidney Involvement in Systemic Calcitonin Amyloidosis Associated with Medullary Thyroid Carcinoma
Case Report Kidney Involvement in Systemic Calcitonin Amyloidosis Associated With Medullary Thyroid Carcinoma Timco Koopman, MD,1 Cindy Niedlich-den Herder, MD,1 Coen A. Stegeman, MD, PhD,2 Thera P. Links, MD, PhD,3 Johan Bijzet, BSc,4 Bouke P.C. Hazenberg, MD, PhD,4 and Arjan Diepstra, MD, PhD1 A 52-year-old woman with widely disseminated medullary thyroid carcinoma developed nephrotic syndrome and slowly decreasing kidney function. A kidney biopsy was performed to differentiate between malignancy- associated membranous glomerulopathy and tyrosine kinase inhibitor–induced focal segmental glomerulo- sclerosis. Surprisingly, the biopsy specimen revealed diffuse glomerular deposition of amyloid that was proved to be derived from the calcitonin hormone (Acal), produced by the medullary thyroid carcinoma. This amyloid was also present in an abdominal fat pad biopsy. Although local ACal deposition is a characteristic feature of medullary thyroid carcinoma, the systemic amyloidosis involving the kidney that is presented in this case report has not to our knowledge been described previously and may be the result of long-term high plasma calcitonin levels. Our case illustrates that systemic calcitonin amyloidosis should be considered in the differential diagnosis of proteinuria in patients with medullary thyroid carcinoma. Am J Kidney Dis. -(-):---. ª 2016 by the National Kidney Foundation, Inc. INDEX WORDS: Calcitonin amyloid (ACal); medullary thyroid carcinoma; systemic amyloidosis; kidney amyloidosis; amyloid-associated glomerulopathy; nephrotic syndrome; proteinuria; decreased kidney function; renal biopsy; case report. n patients with malignant disease, the development 131iodine-metaiodobenzylguanidine, the patient was clinically I of nephrotic syndrome can be caused by mem- stable. On follow-up, clinical progression was initially slow, with branous glomerulopathy due to the deposition of an- calcitonin levels increasing steadily from 150,000 to 400,000 ng/L tibodies.