Sea Squirt) Capable of Metabolizing Iodine?
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Settlement Patterns in Ascidians Concerning Have Been
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC Larval settlement behaviour in six gregarious ascidians in relation to adult 2 distribution 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Marc Rius1,2,*, George M. Branch2, Charles L. Griffiths1,2, Xavier Turon3 18 19 20 1 Centre for Invasion Biology, Zoology Department, University of Cape Town, 21 Rondebosch 7701, South Africa 22 23 2 Marine Biology Research Centre, Zoology Department, University of Cape Town, 24 Rondebosch 7701, South Africa 25 26 3 Center for Advanced Studies of Blanes (CEAB, CSIC), Accés Cala St. Francesc 14, 27 17300 Blanes (Girona), Spain 28 29 30 31 32 33 34 * Corresponding author: Marc Rius 35 Centre for Invasion Biology, Zoology Department, University of Cape Town, 36 Rondebosch 7701, South Africa 37 E-mail: [email protected] 38 Telephone: +27 21 650 4939 39 Fax: +27 21 650 3301 40 41 Running head: Settlement patterns of gregarious ascidians 42 43 44 1 45 ABSTRACT 46 Settlement influences the distribution and abundance of many marine organisms, 47 although the relative roles of abiotic and biotic factors influencing settlement are poorly 48 understood. Species that aggregate often owe this to larval behaviour, and we ask 49 whether this predisposes ascidians to becoming invasive, by increasing their capacity to 50 maintain their populations. We explored the interactive effects of larval phototaxis and 51 geotaxis and conspecific adult extracts on settlement rates of a representative suite of 52 six species of ascidians that form aggregations in the field, including four aliens with 53 global distributions, and how they relate to adult habitat characteristics. -
Ciona Intestinalis and Comparative Analysis with Ciona Savignyi
Downloaded from genome.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press Methods Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi Jong Hyun Kim,1,4 Michael S. Waterman,2,3 and Lei M. Li2,3 1Department of Computer Science, Yonsei University, Seoul, 120-749, Republic of Korea; 2Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, USA; 3Department of Mathematics, University of Southern California, Los Angeles, California 90089, USA One of the main goals in genome sequencing projects is to determine a haploid consensus sequence even when clone libraries are constructed from homologous chromosomes. However, it has been noticed that haplotypes can be inferred from genome assemblies by investigating phase conservation in sequenced reads. In this study, we seek to infer haplotypes, a diploid consensus sequence, from the genome assembly of an organism, Ciona intestinalis. The Ciona intestinalis genome is an ideal resource from which haplotypes can be inferred because of the high polymorphism rate (1.2%). The haplotype estimation scheme consists of polymorphism detection and phase estimation. The core step of our method is a Gibbs sampling procedure. The mate-pair information from two-end sequenced clone inserts is exploited to provide long-range continuity. We estimate the polymorphism rate of Ciona intestinalis to be 1.2% and 1.5%, according to two different polymorphism counting schemes. The distribution of heterozygosity number is well fit by a compound Poisson distribution. The N50 length of haplotype segments is 37.9 kb in our assembly, while the N50 scaffold length of the Ciona intestinalis assembly is 190 kb. -
Phlebobranchia of CTAW
PHLEBOBRANCHIA PHLEBOBRANCHIA The suborder Phlebobranchia (order Enterogona) is characterised by having unpaired gonads present only on the same side of the body as the gut. As in Stolidobranchia, the body is not divided into different sections (such as thorax, abdomen and posterior abdomen) as the gut is folded up in the parietal body wall outside the pharynx and the large branchial sac occupies the whole length of the body. Usually the branchial sac (which is flat, without folds) has internal longitudinal vessels (although only vestiges remain in Agneziidae). Epicardial sacs do not persist in adults as they do in Aplousobranchia, although excretory vesicles (nephrocytes) embedded in the body wall over the gut are known to originate from the embryonic epicardium in Ascidiidae and Corellidae. Most phlebobranchs are solitary. However, Plurellidae Kott, 1973 includes both solitary and colonial forms, and Perophoridae Giard, 1872 are all colonial. Replication in Perophoridae is from ectodermal epithelium (rather than endodermal or mesodermal tissue the mesodermal tissue of the vascular stolon (rather than the endodermal tissue as in most as in Aplousobranchia). The process of replication has not been investigated in Plurellidae. Phlebobranch taxa occurring in Australia are documented in Kott (1985). Family level taxa are characterised principally by the size and form of the branchial sac including the number of branchial vessels and form of the stigmata; the form, size and position of the gonads; and the habit (colonial or solitary) of the taxon. Berrill (1950) has discussed problems in assessing the phylogeny of Perophoridae. References Berrill, N.J. (1950). The Tunicata. Ray Soc. Publs 133: 1–354 Giard, A.M. -
Cionin, a Vertebrate Cholecystokinin/Gastrin
www.nature.com/scientificreports OPEN Cionin, a vertebrate cholecystokinin/gastrin homolog, induces ovulation in the ascidian Ciona intestinalis type A Tomohiro Osugi, Natsuko Miyasaka, Akira Shiraishi, Shin Matsubara & Honoo Satake* Cionin is a homolog of vertebrate cholecystokinin/gastrin that has been identifed in the ascidian Ciona intestinalis type A. The phylogenetic position of ascidians as the closest living relatives of vertebrates suggests that cionin can provide clues to the evolution of endocrine/neuroendocrine systems throughout chordates. Here, we show the biological role of cionin in the regulation of ovulation. In situ hybridization demonstrated that the mRNA of the cionin receptor, Cior2, was expressed specifcally in the inner follicular cells of pre-ovulatory follicles in the Ciona ovary. Cionin was found to signifcantly stimulate ovulation after 24-h incubation. Transcriptome and subsequent Real-time PCR analyses confrmed that the expression levels of receptor tyrosine kinase (RTK) signaling genes and a matrix metalloproteinase (MMP) gene were signifcantly elevated in the cionin-treated follicles. Of particular interest is that an RTK inhibitor and MMP inhibitor markedly suppressed the stimulatory efect of cionin on ovulation. Furthermore, inhibition of RTK signaling reduced the MMP gene expression in the cionin-treated follicles. These results provide evidence that cionin induces ovulation by stimulating MMP gene expression via the RTK signaling pathway. This is the frst report on the endogenous roles of cionin and the induction of ovulation by cholecystokinin/gastrin family peptides in an organism. Ascidians are the closest living relatives of vertebrates in the Chordata superphylum, and thus they provide important insights into the evolution of peptidergic systems in chordates. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska. -
Ciona Intestinalis
UC Berkeley UC Berkeley Previously Published Works Title Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis Permalink https://escholarship.org/uc/item/6531j4jb Journal Genome Research, 15(12) ISSN 1088-9051 Authors Shi, Weiyang Levine, Michael Davidson, Brad Publication Date 2005-12-01 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Perspective Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis Weiyang Shi, Michael Levine, and Brad Davidson1 Department of Molecular and Cell Biology, Division of Genetics and Development, Center for Integrative Genomics, University of California, Berkeley, California 94720, USA The draft genome of the primitive chordate, Ciona intestinalis, was published three years ago. Since then, significant progress has been made in utilizing Ciona’s genomic and morphological simplicity to better understand conserved chordate developmental processes. Extensive annotation and sequencing of staged EST libraries make the Ciona genome one of the best annotated among those that are publicly available. The formation of the Ciona tadpole depends on simple, well-defined cellular lineages, and it is possible to trace the lineages of key chordate tissues such as the notochord and neural tube to the fertilized egg. Electroporation methods permit the targeted expression of regulatory genes and signaling molecules in defined cell lineages, as well as the rapid identification of regulatory DNAs underlying cell-specific gene expression. The recent sequencing of a second Ciona genome (C. savignyi) permits the use of simple alignment algorithms for the identification of conserved noncoding sequences, including microRNA genes and enhancers. Detailed expression profiles are now available for almost every gene that encodes a regulatory protein or cell-signaling molecule. -
The Metamorphosis of the Endostyle (Thy- Roid Gland) of Ammocoetes Branchialis (Larval Land-Locked Petromyzon Marinus (Jordan) Or Petromy- Zon Dorsatus (Wilder) ).*I
THE METAMORPHOSIS OF THE ENDOSTYLE (THY- ROID GLAND) OF AMMOCOETES BRANCHIALIS (LARVAL LAND-LOCKED PETROMYZON MARINUS (JORDAN) OR PETROMY- ZON DORSATUS (WILDER) ).*I BY DAVID MARINE, M.D. (From the H. K. Cushing Laboratory of Experimental Medicine, Western Reserve University, Cleveland, and the Laboratory of Histology and Embryology, Cornell University, Ithaca.) PLATES 66 TO 70, INTRODUCTION. Wilhelm Mfil.ler in I873 homologized the endostyle, or hypo- branchial groove, of the Tunicate, Amphioxus, and the larval Petro- myzon with the thyroid gland of all higher chordates. Subse- quent investigations have served to strengthen this remarkable homology, which would have been impossible of demonstration but for the survival of a single ctass of vertebrates, the Cyclostomes, of which the Petromyzontid~e, or Lampreys, are the best known order. The lamprey embraces in its own life history both the fullest devel- opment of the endostyle mechanisms and the characteristic ductless * Received for publication, December 3o, I912. 1I am indebted to Professor B. F. Kingsbury for the privileges of his labora- tory and for helpful criticisms and suggestions. I wish also to thank Professor S. H. Gage for helpful suggestions, and Mr. J. F. Badertscher for aid in many technical problems. 2In addition to the ventral midline subpharyngeal glandular structure, or endostyle proper, there are accessory structures directly continuous with the endostyle epithelium developed in the pharyngeal mucosa that are believed to function as the path of conduction for the slime cord issuing from the orifice of the endostyle. This function has not, however, been observed in the Am- mocoetes and is based on reasoning by analogy from Giard's (Giard, A., Arch. -
Biology of the Invasive Ascidian Ascidiella Aspersa in Its Native Habitat: Reproductive Patterns and Parasite Load
Estuarine, Coastal and Shelf Science 181 (2016) 249e255 Contents lists available at ScienceDirect Estuarine, Coastal and Shelf Science journal homepage: www.elsevier.com/locate/ecss Biology of the invasive ascidian Ascidiella aspersa in its native habitat: Reproductive patterns and parasite load * Sharon A. Lynch , Grainne Darmody, Katie O'Dwyer, Mary Catherine Gallagher, Sinead Nolan, Rob McAllen, Sarah C. Culloty School of Biological, Earth and Environmental Sciences, Aquaculture and Fisheries Development Centre and Environmental Research Institute, University College Cork, The Cooperage, Distillery Fields, North Mall, Cork, Ireland article info abstract Article history: The European sea squirt Ascidiella aspersa is a solitary tunicate native to the northeastern Atlantic, Received 4 February 2016 commonly found in shallow and sheltered marine ecosystems where it is capable of forming large Received in revised form clumps and outcompeting other invertebrate fauna at settlement. To date, there have been relatively few 28 July 2016 studies looking at the reproductive biology and health status of this invasive species. Between 2006 and Accepted 29 August 2016 2010 sampling of a native population took place to investigate gametogenesis and reproductive cycle and Available online 31 August 2016 to determine the impact of settlement depth on reproduction. In addition, parasite diversity and impact was assessed. A staging system to assess reproductive development was determined. The study high- Keywords: Ascidiella aspersa lighted that from year to year the tunicate could change its reproductive strategy from single sex to Gametogenesis hermaphrodite, with spawning possible throughout the year. Depth did not impact on sex determination, Parasites however, gonad maturation and spawning occurred earlier in individuals in deeper waters compared to Invasives shallow depth and it also occurred later in A. -
And Description of a New Species, Ciona Interme
An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia Francesco Mastrototaro, Federica Montesanto, Marika Salonna, Frédérique Viard, Giovanni Chimienti, Egidio Trainito, Carmela Gissi To cite this version: Francesco Mastrototaro, Federica Montesanto, Marika Salonna, Frédérique Viard, Giovanni Chimi- enti, et al.. An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia. Zoological Journal of the Linnean Society, Linnean Society of London, 2020, 10.1093/zoolinnean/zlaa042. hal-02861027 HAL Id: hal-02861027 https://hal.archives-ouvertes.fr/hal-02861027 Submitted on 8 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Doi: 10.1093/zoolinnean/zlaa042 An integrative taxonomy framework for the study of the genus Ciona (Ascidiacea) and the description of the new species Ciona intermedia Francesco Mastrototaro1, Federica Montesanto1*, Marika Salonna2, Frédérique Viard3, Giovanni Chimienti1, Egidio Trainito4, Carmela Gissi2,5,* 1 Department of Biology and CoNISMa LRU, University of Bari “Aldo Moro” Via Orabona, 4 - 70125 Bari, Italy 2 Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari “Aldo Moro”, Via Orabona, 4 - 70125 Bari, Italy 3 Sorbonne Université, CNRS, Lab. -
Kclo4 Inhibits Thyroidal Activity in the Larval Lamprey Endostyle in Vitro
GENERAL AND COMPARATIVE ENDOCRINOLOGY General and Comparative Endocrinology 128 (2002) 214–223 www.academicpress.com KClO4 inhibits thyroidal activity in the larval lamprey endostyle in vitro Richard G. Manzon*,1 and John H. Youson Department of Zoology and Division of Life Sciences, University of Toronto at Scarborough, 1265 Military Trail, Toronto, Ont., Canada MIC 1A4 Accepted 5 July 2002 Abstract An in vitro experimental system was devised to assess the direct effects of the goitrogen, potassium perchlorate (KClO4), on ra- dioiodide uptake and organification by the larval lamprey endostyle. Organification refers to the incorporation of iodide into lamprey thyroglobulin (Tg). Histological and biochemical evidence indicated that endostyles were viable at the termination of a 4 h in vitro incubation. A single iodoprotein, designated as lamprey Tg, was identified in the endostylar homogenates by polyacrylamide gel electrophoresis and Western blotting. Lamprey Tg was immunoreactive with rabbit anti-human Tg serum and had an electrophoretic mobility similar to that of reduced porcine Tg. When KClO4 was added to the incubation medium, both iodide uptake and orga- nification by the endostyle were significantly reduced relative to controls as determined by gamma counting, and gel-autoradiography and densitometry, respectively. Western blotting showed that KClO4 significantly lowered the total amount of lamprey Tg in the endostyle. Based on the results of this in vitro investigation, we conclude that KClO4 acts directly on the larval lamprey endostyle to inhibit thyroidal activity. These data support a previous supposition from in vivo experimentation that KClO4 acts directly on the endostyle to suppress the synthesis of thyroxine and triiodothyronine, resulting in a decrease in the serum levels of these two hormones. -
Repertoires of G Protein-Coupled Receptors for Ciona-Specific Neuropeptides
Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides Akira Shiraishia, Toshimi Okudaa, Natsuko Miyasakaa, Tomohiro Osugia, Yasushi Okunob, Jun Inouec, and Honoo Satakea,1 aBioorganic Research Institute, Suntory Foundation for Life Sciences, 619-0284 Kyoto, Japan; bDepartment of Biomedical Intelligence, Graduate School of Medicine, Kyoto University, 606-8507 Kyoto, Japan; and cMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, 904-0495 Okinawa, Japan Edited by Thomas P. Sakmar, The Rockefeller University, New York, NY, and accepted by Editorial Board Member Jeremy Nathans March 11, 2019 (received for review September 26, 2018) Neuropeptides play pivotal roles in various biological events in the conservesagreaternumberofneuropeptide homologs than proto- nervous, neuroendocrine, and endocrine systems, and are corre- stomes (e.g., Caenorhabditis elegans and Drosophila melanogaster) lated with both physiological functions and unique behavioral and other invertebrate deuterostomes (7–13), confirming the evo- traits of animals. Elucidation of functional interaction between lutionary and phylogenetic relatedness of ascidians to vertebrates. neuropeptides and receptors is a crucial step for the verification of The second group includes Ciona-specific novel neuropeptides, their biological roles and evolutionary processes. However, most namely Ci-NTLPs, Ci-LFs, and Ci-YFV/Ls (SI Appendix,Fig. receptors for novel peptides remain to be identified. Here, we S1 and Table S1), which share neither consensus motifs nor se- show the identification of multiple G protein-coupled receptors quence similarity with any other peptides (8, 9). The presence of (GPCRs) for species-specific neuropeptides of the vertebrate sister both homologous and species-specific neuropeptides highlights this group, Ciona intestinalis Type A, by combining machine learning phylogenetic relative of vertebrates as a prominent model organism and experimental validation. -
Title Occurrence of the European Ascidian Ascidiella Scabra (Müller
Occurrence of the European ascidian Ascidiella scabra (Müller, Title 1776) in the 19 century in Nagasaki, Japan, probably as an ephemeral alien species Author(s) NISHIKAWA, Teruaki; OTANI, Michio Contributions from the Biological Laboratory, Kyoto Citation University (2004), 29(4): 401-408 Issue Date 2004-07-21 URL http://hdl.handle.net/2433/156412 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University Contr. biol. lab. Kyoto Univ., Vol. 29, pp. 401ZK)8. Issued 21 July 2004 Occurrence of the European ascidian Ascidiella scabra (Milller, 1776) in the 19 century in Nagasaki, Japan, probably as an ephemeral alien species Teruaki NISHIKAWA' and Michio OTANI2 Thei Nagoya University Museum, Chikusa-ku, Nagoya, 464-8601 Japan 2Marine Ecological Institute Inc., 3-3-4 Harada Moto-machi, Toyonaka, 561 -0808 Japan ABSTRACT The generic affiliation of the single Japanese record of the ascidian genus Ascidietta, as "A. virginea (MtiIIer)" by Hartmeyer in 1902, was questioned by Nishikawa in 1995 because of the genus's natura1 distribution being confined to Atlantic waters, the somewhat confused history of taxonomy in the genus and allies, and of the insufficient description. Our personal reexamination of the material collected from Nagasaki and deposited in the Museum fUr Naturkunde der Humboldt-Universitat zu Berlin reyeals that it is identical to Ascidietla scabra (Mti11er, 1776), so far recorded exclusively from European boreal to warm-temperate waters. Combining imperfect label information of the material with historical knowledge, the material is supposed to have been collected in February, 1861, by Mr. Otto SchottmUller, a member of the Prussian East Asia Expedition led by Graf zu Eulenburg.