Widely Distributed Red Algae Often Represent Hidden Introductions, Complexes of Cryptic Species Or Species with Strong Phylogeographic Structure1
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Rhodomelaceae, Rhodophyta) Based on Molecular Analyses and Morphological Observations of Specimens from the Type Locality in Western Australia
Phytotaxa 324 (1): 051–062 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2017 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.324.1.3 The phylogenetic position of Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta) based on molecular analyses and morphological observations of specimens from the type locality in Western Australia JOHN M. HUISMAN1, BYEONGSEOK KIM2 & MYUNG SOOK KIM2* 1Western Australian Herbarium, Department of Biodiversity, Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983, Australia; and School of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia 6150, Australia 2Department of Biology, Jeju National University, Jeju 63243, Korea *Author for correspondence. Email: [email protected] Abstract Considerable uncertainty surrounds the phylogenetic position of Polysiphonia scopulorum, a species with an apparently cos- mopolitan distribution. Here we report, for the first time, molecular phylogenetic analyses using plastid rbcL gene sequences and morphological observations of P. scopulorum collected from the type locality, Rottnest Island in Western Australia. Mor- phological characteristics of the Rottnest Island specimens allowed unequivocal identification, however, the sequence analy- ses uncovered discrepancies in previous molecular studies that included specimens identified as P. scopulorum from other locations. The phylogenetic evidence clearly revealed that P. scopulorum from Rottnest Island formed a sister clade with P. caespitosa from Spain (JX828149 as P. scopulorum) with moderate support, but that it differed from specimens identified as P. scopulorum from the U.S.A. (AY396039, EU492915). In light of this, we suggest that P. scopulorum be considered an endemic species with a distribution restricted to Australia. -
The Phylogenetic Position of Polysiphonia Scopulorum
Phytotaxa 324 (1): 051–062 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2017 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.324.1.3 The phylogenetic position of Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta) based on molecular analyses and morphological observations of specimens from the type locality in Western Australia JOHN M. HUISMAN1, BYEONGSEOK KIM2 & MYUNG SOOK KIM2* 1Western Australian Herbarium, Department of Biodiversity, Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983, Australia; and School of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia 6150, Australia 2Department of Biology, Jeju National University, Jeju 63243, Korea *Author for correspondence. Email: [email protected] Abstract Considerable uncertainty surrounds the phylogenetic position of Polysiphonia scopulorum, a species with an apparently cos- mopolitan distribution. Here we report, for the first time, molecular phylogenetic analyses using plastid rbcL gene sequences and morphological observations of P. scopulorum collected from the type locality, Rottnest Island in Western Australia. Mor- phological characteristics of the Rottnest Island specimens allowed unequivocal identification, however, the sequence analy- ses uncovered discrepancies in previous molecular studies that included specimens identified as P. scopulorum from other locations. The phylogenetic evidence clearly revealed that P. scopulorum from Rottnest Island formed a sister clade with P. caespitosa from Spain (JX828149 as P. scopulorum) with moderate support, but that it differed from specimens identified as P. scopulorum from the U.S.A. (AY396039, EU492915). In light of this, we suggest that P. scopulorum be considered an endemic species with a distribution restricted to Australia. -
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cryptogamie Algologie 2021 ● 42 ● 7 DIRECTEUR DE LA PUBLICATION / PUBLICATION DIRECTOR : Bruno DAVID Président du Muséum national d’Histoire naturelle RÉDACTRICE EN CHEF / EDITOR-IN-CHIEF : Line LE GALL Muséum national d’Histoire naturelle ASSISTANTE DE RÉDACTION / ASSISTANT EDITOR : Marianne SALAÜN ([email protected]) MISE EN PAGE / PAGE LAYOUT : Marianne SALAÜN RÉDACTEURS ASSOCIÉS / ASSOCIATE EDITORS Ecoevolutionary dynamics of algae in a changing world Stacy KRUEGER-HADFIELD Department of Biology, University of Alabama, 1300 University Blvd, Birmingham, AL 35294 (United States) Jana KULICHOVA Department of Botany, Charles University, Prague (Czech Republic) Cecilia TOTTI Dipartimento di Scienze della Vita e dell’Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona (Italy) Phylogenetic systematics, species delimitation & genetics of speciation Sylvain FAUGERON UMI3614 Evolutionary Biology and Ecology of Algae, Departamento de Ecología, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Av. Bernardo O’Higgins 340, Santiago (Chile) Marie-Laure GUILLEMIN Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia (Chile) Diana SARNO Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli (Italy) Comparative evolutionary genomics of algae Nicolas BLOUIN Department of Molecular Biology, University of Wyoming, Dept. 3944, 1000 E University Ave, Laramie, WY 82071 (United States) Heroen VERBRUGGEN School of BioSciences, -
Analysis of Chloroplast Genomes and a Supermatrix Inform Reclassification of the Rhodomelaceae (Rhodophyta)
Journal of Phycology ANALYSIS OF CHLOROPLAST GENOMES AND A SUPERMATRIX INFORM RECLASSIFICATION OF THE RHODOMELACEAE (RHODOPHYTA) Journal: Journal of Phycology Manuscript ID JPY-17-049-ART.R1 Manuscript Type: Regular Article Date Submitted by the Author: n/a Complete List of Authors: Díaz Tapia, Pilar; University of A Coruña, Coastal Biology Research Group Maggs, Christine; Bournemouth University, Faculty of Science and Technology West, John; University of Melbourne, School of BioSciences Verbruggen, Heroen; University of Melbourne, School of BioSciences chloroplast genome, classification, phylogenomics, red algae, Keywords: Rhodomelaceae, Rhodophyta, tribes Page 1 of 129 Journal of Phycology 1 ANALYSIS OF CHLOROPLAST GENOMES AND A SUPERMATRIX INFORM 1 2 RECLASSIFICATION OF THE RHODOMELACEAE (RHODOPHYTA) Formatted: English (U.K.) 3 1 4 Pilar Díaz-Tapia2 5 Coastal Biology Research Group, Faculty of Sciences and Centre for Advanced 6 Scientific Research (CICA), University of A Coruña, 15071, A Coruña. Spain 7 School of BioSciences, University of Melbourne, Melbourne, Victoria 3010, Australia 8 Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, 9 Dorset BH12 5BB, UK 10 11 Christine A. Maggs 12 Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, 13 Dorset BH12 5BB, UK 14 15 John A. West 16 School of BioSciences, University of Melbourne, Melbourne, Victoria 3010, Australia 17 18 Heroen Verbruggen 19 School of BioSciences, University of Melbourne, Melbourne, Victoria 3010, Australia 20 21 2Author for correspondence: e-mail [email protected] 1 Received ; accepted 1 Journal of Phycology Page 2 of 129 22 Abstract 23 With over a thousand species, the Rhodomelaceae is the most species-rich family of red 24 algae. -
Manuscript Details
Manuscript Details Manuscript number MPE_2019_141 Title Morphological evolution and classification of the red algal order Ceramiales inferred using plastid phylogenomics Article type Research Paper Abstract The order Ceramiales contains about one third of red algal diversity and it was classically classified into four families according to morphology. The first phylogenies based on one or two molecular markers were poorly supported and failed to resolve these families as monophyletic. Nine families are currently recognized, but relationships within and among them are poorly understood. We produced a well-resolved phylogeny for the Ceramiales using plastid genomes for 80 (27 newly sequenced) representative species of the major lineages. Three of the previously recognized families were resolved as independent monophyletic lineages: Ceramiaceae, Wrangeliaceae and Rhodomelaceae. By contrast, our results indicated that the other six families require reclassification. We propose the new order Inkyuleeales, a new circumscription of the Callithamniaceae to include the Spyridiaceae, and a new concept of the Delesseriaceae that includes the Sarcomeniaceae and the Dasyaceae. We also investigated the evolution of the thallus structure, which has been important in the classical delineation of families. The ancestor of the Ceramiales was a monosiphonous filament that evolved into more complex morphologies several times independently during the evolutionary history of this hyperdiverse lineage. Keywords Evolution; Morphology; New order; New subfamily; -
The Genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F
European Journal of Phycology ISSN: 0967-0262 (Print) 1469-4433 (Online) Journal homepage: http://www.tandfonline.com/loi/tejp20 The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well-defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales) Pilar Díaz-Tapia, Lynne McIvor, D. Wilson Freshwater, Heroen Verbruggen, Michael J. Wynne & Christine A. Maggs To cite this article: Pilar Díaz-Tapia, Lynne McIvor, D. Wilson Freshwater, Heroen Verbruggen, Michael J. Wynne & Christine A. Maggs (2017) The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well-defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales), European Journal of Phycology, 52:1, 1-30, DOI: 10.1080/09670262.2016.1256436 To link to this article: http://dx.doi.org/10.1080/09670262.2016.1256436 View supplementary material Published online: 01 Feb 2017. Submit your article to this journal Article views: 181 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tejp20 Download by: [UNAM Ciudad Universitaria] Date: 04 May 2017, At: 14:07 EUROPEAN JOURNAL OF PHYCOLOGY, 2017 VOL. 52, NO. 1, 1–30 http://dx.doi.org/10.1080/09670262.2016.1256436 The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well-defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales) Pilar Díaz-Tapiaa,b,c, Lynne McIvord, D. Wilson Freshwatere, Heroen -
Plastid Genome Analysis of Three Nemaliophycidae Red Algal Species Suggests Environmental Adaptation for Iron Limited Habitats
RESEARCH ARTICLE Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats Chung Hyun Cho1, Ji Won Choi1, Daryl W. Lam2, Kyeong Mi Kim3, Hwan Su Yoon1* 1 Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea, 2 Department of Biological a1111111111 Sciences, University of Alabama, Tuscaloosa, Alabama, United States of America, 3 Marine Biodiversity Institute of Korea, Seocheon, Korea a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 Abstract The red algal subclass Nemaliophycidae includes both marine and freshwater taxa that con- OPEN ACCESS tribute to more than half of the freshwater species in Rhodophyta. Given that these taxa inhabit diverse habitats, the Nemaliophycidae is a suitable model for studying environmental Citation: Cho CH, Choi JW, Lam DW, Kim KM, Yoon HS (2018) Plastid genome analysis of three adaptation. For this purpose, we characterized plastid genomes of two freshwater species, Nemaliophycidae red algal species suggests Kumanoa americana (Batrachospermales) and Thorea hispida (Thoreales), and one marine environmental adaptation for iron limited habitats. species Palmaria palmata (Palmariales). Comparative genome analysis identified seven PLoS ONE 13(5): e0196995. https://doi.org/ genes (ycf34, ycf35, ycf37, ycf46, ycf91, grx, and pbsA) that were different among marine 10.1371/journal.pone.0196995 and freshwater species. Among currently available red algal plastid genomes (127), four Editor: Timothy P. Devarenne, Texas A&M genes (pbsA, ycf34, ycf35, ycf37) were retained in most of the marine species. Among University College Station, UNITED STATES these, the pbsA gene, known for encoding heme oxygenase, had two additional copies Received: January 19, 2018 (HMOX1 and HMOX2) that were newly discovered and were reported from previously red Accepted: April 24, 2018 algal nuclear genomes. -
PDF (This Is an Accepted Manuscript of an Article Published by Taylor
European Journal of Phycology For Peer Review Only The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well-defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales) Journal: European Journal of Phycology Manuscript ID TEJP-2016-0091.R1 Manuscript Type: Original Article Date Submitted by the Author: n/a Complete List of Authors: Díaz-Tapia, Pilar; University of A Coruña, Departamento de Bioloxía Animal, Vexetal e Ecoloxía; University of Melbourne, School of BioSciences; Bournemouth University, Faculty of Science and Technology McIvor, Lynne; Queen’s University Belfast, School of Biological Sciences Freshwater, David; University of North Carolina at Wilmington, Center for Marine Science Verbruggen, Heroen; University of Melbourne, School of BioSciences Wynne, Michael; University of Michigan Ann Arbor, Department of Ecology and Evolutionary Biology and Herbarium Maggs, Christine; Queen´s University Belfast, School of Biological Sciences; Bournemouth University, Faculty of Science and Technology Biogeography, Evolution, Molecular systematics, morphology, phylogeny, Keywords: Polysiphonia, Red algae, Time calibration URL: http:/mc.manuscriptcentral.com/tejp Email: [email protected] Page 1 of 109 European Journal of Phycology 1 2 3 4 5 1 6 7 1 The genera Melanothamnus Bornet & Falkenberg and Vertebrata S.F. Gray constitute well- 8 9 2 defined clades of the red algal tribe Polysiphonieae (Rhodomelaceae, Ceramiales) 10 11 3 12 4 PILAR DÍAZ-TAPIA 1,2,3 , LYNNE MCIVOR 4, D. WILSON FRESHWATER 5, HEROEN