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Evolution and Application of Inteins in Candida Species: a Review
fmicb-07-01585 October 6, 2016 Time: 13:7 # 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Frontiers - Publisher Connector REVIEW published: 10 October 2016 doi: 10.3389/fmicb.2016.01585 Evolution and Application of Inteins in Candida species: A Review José A. L. Fernandes1†, Tâmara H. R. Prandini2†, Maria da Conceição A. Castro1, Thales D. Arantes1,3, Juliana Giacobino2, Eduardo Bagagli2 and Raquel C. Theodoro1* 1 Institute of Tropical Medicine of Rio Grande do Norte, Universidade Federal do Rio Grande do Norte, Natal, Brazil, 2 Department of Microbiology and Immunology, Institute of Biosciences, Universidade Estadual Paulista Julio de Mesquita Filho, Botucatu, Brazil, 3 Post-graduation Program in Biochemistry, Universidade Federal do Rio Grande do Norte, Natal, Brazil Inteins are invasive intervening sequences that perform an autocatalytic splicing from their host proteins. Among eukaryotes, these elements are present in many fungal species, including those considered opportunistic or primary pathogens, such as Candida spp. Here we reviewed and updated the list of Candida species containing inteins in the genes VMA, THRRS and GLT1 and pointed out the importance of these elements as molecular markers for molecular epidemiological researches and species- specific diagnosis, since the presence, as well as the size of these inteins, is polymorphic Edited by: among the different species. Although absent in Candida albicans, these elements are Joshua D. Nosanchuk, present in different sizes, in some environmental Candida spp. and also in most of the Albert Einstein College of Medicine, USA non-albicans Candida spp. considered emergent opportunistic pathogens. -
Uncommon Fungi and Related Species
Uncommon Fungi and 268 Related Species Duane R. Hospenthal SHORT VIEW SUMMARY SCEDOSPORIUM APIOSPERMUM Diagnosis FUSARIUMM SPP. (PSEUDALLESCHERIA BOYDIII) SPECIES Diagnosis is made by culture recovery from the } Definition COMPLEX infected site. } Can cause disseminated infection in } Because L. prolificanss may colonize airways, Definition immunocompromised patients. sputum cultures may not reflect infection. } Infection of the lungs, bones and joints, or } Common cause of keratitis and other eye central nervous system (CNS); may be Therapy infections in contact lens wearers and disseminated. } No effective therapy. Consider voriconazole following trauma. } Also causes mycetoma (see Chapter 261). with amphotericin B. } Skin and soft tissue infection after trauma, onychomycosis; can cause mycetoma. Epidemiology DARK-WALLED FUNGI (BIPOLARIS, } Typically occurs in the immunocompromised or EXOPHIALA, EXSEROHILUM, Epidemiology following trauma. PHIALOPHORA, OCHROCONIS, } Common plant pathogens; found in soil and } CNS infection in immunocompetent persons CURVULARIA, OTHERS) organic debris. after near drowning. Have been recovered in hospital water supplies. Definition } } Organism can be found in soil and fresh water, } This infection involves fungi that have melanin Microbiology especially stagnant or polluted. in their cell walls and may appear dark walled } The most common species infecting humans Microbiology in tissue. belong to one of three species complexes: } Scedosporium apiospermum, Scedosporium } Infection is often termed Fusarium solani, Fusarium oxysporum, or boydiii (formerly Pseudallescheria boydiii), and “phaeohyphomycosis” and typically presents Fusarium fujikuroi, although the number of Scedosporium aurantiacumm are the most as localized skin and soft tissue infections, species identified as causing infection is common species infecting humans. CNS infections, or allergic sinusitis. increasing as molecular methods of } Identification is typically made by DNA } Dark-walled fungi that cause identification have supplanted morphology. -
Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)
| YEASTBOOK GENOME ORGANIZATION AND INTEGRITY Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina) Bernard A. Dujon*,†,1 and Edward J. Louis‡,§ *Department Genomes and Genetics, Institut Pasteur, Centre National de la Recherche Scientifique UMR3525, 75724-CEDEX15 Paris, France, †University Pierre and Marie Curie UFR927, 75005 Paris, France, ‡Centre for Genetic Architecture of Complex Traits, and xDepartment of Genetics, University of Leicester, LE1 7RH, United Kingdom ORCID ID: 0000-0003-1157-3608 (E.J.L.) ABSTRACT Considerable progress in our understanding of yeast genomes and their evolution has been made over the last decade with the sequencing, analysis, and comparisons of numerous species, strains, or isolates of diverse origins. The role played by yeasts in natural environments as well as in artificial manufactures, combined with the importance of some species as model experimental systems sustained this effort. At the same time, their enormous evolutionary diversity (there are yeast species in every subphylum of Dikarya) sparked curiosity but necessitated further efforts to obtain appropriate reference genomes. Today, yeast genomes have been very informative about basic mechanisms of evolution, speciation, hybridization, domestication, as well as about the molecular machineries underlying them. They are also irreplaceable to investigate in detail the complex relationship between genotypes and phenotypes with both theoretical and practical implications. This review examines these questions at two distinct levels offered by the broad evolutionary range of yeasts: inside the best-studied Saccharomyces species complex, and across the entire and diversified subphylum of Saccharomycotina. While obviously revealing evolutionary histories at different scales, data converge to a remarkably coherent picture in which one can estimate the relative importance of intrinsic genome dynamics, including gene birth and loss, vs. -
Phylogeny of the Genus Arachnomyces and Its Anamorphs and the Establishment of Arachnomycetales, a New Eurotiomycete Order in the Ascomycota
STUDIES IN MYCOLOGY 47: 131-139, 2002 Phylogeny of the genus Arachnomyces and its anamorphs and the establishment of Arachnomycetales, a new eurotiomycete order in the Ascomycota 1, 2 1* 3 2 C. F. C. Gibas , L. Sigler , R. C. Summerbell and R. S. Currah 1University of Alberta Microfungus Collection and Herbarium, Edmonton, Alberta, Canada; 2Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada; 3Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands Abstract: Arachnomyces is a genus of cleistothecial ascomycetes that has morphological similarities to the Onygenaceae and the Gymnoascaceae but is not accommodated well in either taxon. The phylogeny of the genus and its related anamorphs was studied using nuclear SSU rDNA gene sequences. Partial sequences were determined from ex-type cultures representing A. minimus, A. nodosetosus (anamorph Onychocola canadensis), A. kanei (anamorph O. kanei) and A. gracilis (anamorph Malbranchea sp.) and aligned together with published sequences of onygenalean and other ascomycetes. Phylogenetic analysis based on maximum parsimony showed that Arachnomyces is monophyletic, that it includes the hyphomycete Malbranchea sclerotica, and it forms a distinct lineage within the Eurotiomycetes. Based on molecular and morphological data, we propose the new order Arachnomycetales and a new family Arachnomycetaceae. All known anamorphs in this lineage are arthroconidial and have been placed either in Onychocola (A. nodosetosus, A. kanei) or in Malbranchea (A. gracilis). Onychocola is considered appropriate for disposition of the arthroconidial states of Arachnomyces and thus Malbranchea sclerotica and the unnamed anamorph of A. gracilis are redisposed as Onychocola sclerotica comb. nov. and O. gracilis sp. nov. Keywords: Eurotiomycetes, Arachnomycetales, Arachnomycetaceae, Arachnomyces, Onychocola, Malbranchea sclerotica, SSU rDNA, Ascomycota, phylogeny Introduction described from herbivore dung maintained in damp chambers (Singh & Mukerji, 1978; Mukerji, pers. -
Turning on Virulence: Mechanisms That Underpin the Morphologic Transition and Pathogenicity of Blastomyces
Virulence ISSN: 2150-5594 (Print) 2150-5608 (Online) Journal homepage: http://www.tandfonline.com/loi/kvir20 Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces Joseph A. McBride, Gregory M. Gauthier & Bruce S. Klein To cite this article: Joseph A. McBride, Gregory M. Gauthier & Bruce S. Klein (2018): Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces, Virulence, DOI: 10.1080/21505594.2018.1449506 To link to this article: https://doi.org/10.1080/21505594.2018.1449506 © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group© Joseph A. McBride, Gregory M. Gauthier and Bruce S. Klein Accepted author version posted online: 13 Mar 2018. Submit your article to this journal Article views: 15 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=kvir20 Publisher: Taylor & Francis Journal: Virulence DOI: https://doi.org/10.1080/21505594.2018.1449506 Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces Joseph A. McBride, MDa,b,d, Gregory M. Gauthier, MDa,d, and Bruce S. Klein, MDa,b,c a Division of Infectious Disease, Department of Medicine, University of Wisconsin School of Medicine and Public Health, 600 Highland Avenue, Madison, WI 53792, USA; b Division of Infectious Disease, Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, 1675 Highland Avenue, Madison, WI 53792, USA; c Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, 1550 Linden Drive, Madison, WI 53706, USA. -
Severe Chromoblastomycosis-Like Cutaneous Infection Caused by Chrysosporium Keratinophilum
fmicb-08-00083 January 25, 2017 Time: 11:0 # 1 CASE REPORT published: 25 January 2017 doi: 10.3389/fmicb.2017.00083 Severe Chromoblastomycosis-Like Cutaneous Infection Caused by Chrysosporium keratinophilum Juhaer Mijiti1†, Bo Pan2,3†, Sybren de Hoog4, Yoshikazu Horie5, Tetsuhiro Matsuzawa6, Yilixiati Yilifan1, Yong Liu1, Parida Abliz7, Weihua Pan2,3, Danqi Deng8, Yun Guo8, Peiliang Zhang8, Wanqing Liao2,3* and Shuwen Deng2,3,7* 1 Department of Dermatology, People’s Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China, 2 Department of Dermatology, Shanghai Changzheng Hospital, Second Military Medical University, Shanghai, China, 3 Key Laboratory of Molecular Medical Mycology, Shanghai Changzheng Hospital, Second Military Medical University, Shanghai, China, 4 CBS-KNAW Fungal Biodiversity Centre, Royal Netherlands Academy of Arts and Sciences, Utrecht, Netherlands, 5 Medical Mycology Research Center, Chiba University, Chiba, Japan, 6 Department of Nutrition Science, University of Nagasaki, Nagasaki, Japan, 7 Department of Dermatology, First Hospital of Xinjiang Medical University, Urumqi, China, 8 Department of Dermatology, The Second Affiliated Hospital of Kunming Medical University, Kunming, China Chrysosporium species are saprophytic filamentous fungi commonly found in the Edited by: soil, dung, and animal fur. Subcutaneous infection caused by this organism is Leonard Peruski, rare in humans. We report a case of subcutaneous fungal infection caused by US Centers for Disease Control and Prevention, USA Chrysosporium keratinophilum in a 38-year-old woman. The patient presented with Reviewed by: severe chromoblastomycosis-like lesions on the left side of the jaw and neck for 6 years. Nasib Singh, She also got tinea corporis on her trunk since she was 10 years old. -
Boards' Fodder
boards’ fodder Medical Mycology By Adriana Schmidt, MD, and Natalie M. Curcio, MD, MPH. (Updated July 2015*) SUPERFICIAL ORGANISM CLINICAL HISTO/KOH TREATMENT MYCOSES* Pityriasis Malessezia furfur Hypo- or hyper-pigmented Spaghetti & meatballs: Antifungal shampoos and/or versicolor macules short hyphae + yeast PO therapy Tinea nigra Hortaea werneckii (formerly Brown-black non-scaly Branching septate hyphae Topical imidazoles or palmaris Phaeoannellomyces werneckii) macules + budding yeast allylamines Black piedra Piedraia hortae Hard firm black Dark hyphae around concretions acrospores Cut hair off, PO terbinafine, White piedra Trichosporon ovoides or inkin Soft loose white Blastoconidia, imidazoles, or triazoles (formely beigelii) concretions arthroconidia Fluorescent small Microsporum Canis KOH: spores on outside spore ectothrix: M. audouinii of the hair shaft; “Cats And Dogs M. distortum Wood’s lamp --> yellow Sometimes Fight T. schoenleinii fluorescence & Growl” M. ferrugineum+/- gypseum Large spore Trichophyton spp. (T. tonsurans in North America; T. violaceum in KOH: spores within hair Topical antifungals; PO endothrix Europe, Asia, parts of Africa). shaft antifungals for T. manuum, Tinea corporis T. rubrum > T. mentag. Majocchi’s granuloma: T. rubrum capitis, unguium T. pedis Moccasin: T. rubrum, E. floccosum. Interdigital/vesicular: T. mentag T. unguium Distal lateral, proximal and proximal white subungual: T. rubrum. White superficial: T. mentag. HIV: T. rubrum SUBQ MYCOSES** ORGANISM TRANSMISSION CLINICAL HISTO/KOH TREATMENT -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Novel Taxa of Thermally Dimorphic Systemic Pathogens in the Ajellomycetaceae (Onygenales)
This item is the archived peer-reviewed author-version of: Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales) Reference: Dukik Karolina, Munoz Jose F., Jiang Yanping, Feng Peiying, Sigler Lynne, Stielow J. Benjamin, Freeke Joanna, Jamalian Azadeh, van den Ende Bert Gerrits, McEw en Juan G., ....- Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales) Mycoses: diagnosis, therapy and prophylaxis of fungal diseases - ISSN 0933-7407 - 60:5(2017), p. 296-309 Full text (Publisher's DOI): https://doi.org/10.1111/MYC.12601 To cite this reference: https://hdl.handle.net/10067/1436700151162165141 Institutional repository IRUA HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Mycoses Manuscript Author . Author manuscript; Manuscript Author available in PMC 2018 January 20. Published in final edited form as: Mycoses. 2017 May ; 60(5): 296–309. doi:10.1111/myc.12601. Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales) Karolina Dukik1,2,#, Jose F. Muñoz3,4,5,#, Yanping Jiang1,6,*, Peiying Feng1,7, Lynne Sigler8, J. Benjamin Stielow1,9, Joanna Freeke1,9, Azadeh Jamalian1,9, Bert Gerrits van den Ende1, Juan G. McEwen4,10, Oliver K. Clay4,11, Ilan S. Schwartz12,13, Nelesh P. Govender14,15, Tsidiso G. Maphanga15, Christina A. Cuomo3, Leandro Moreno1,2,16, Chris Kenyon14,17, Andrew M. Borman18, and Sybren de Hoog1,2,* 1CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands 2Institute for Biodiversity and Ecosystem -
New Histoplasma Diagnostic Assays Designed Via Whole Genome Comparisons
Journal of Fungi Article New Histoplasma Diagnostic Assays Designed via Whole Genome Comparisons Juan E. Gallo 1,2,3, Isaura Torres 1,3 , Oscar M. Gómez 1,3 , Lavanya Rishishwar 4,5,6, Fredrik Vannberg 4, I. King Jordan 4,5,6 , Juan G. McEwen 1,7 and Oliver K. Clay 1,8,* 1 Cellular and Molecular Biology Unit, Corporación para Investigaciones Biológicas (CIB), Medellín 05534, Colombia; [email protected] (J.E.G.); [email protected] (I.T.); [email protected] (O.M.G.); [email protected] (J.G.M.) 2 Doctoral Program in Biomedical Sciences, Universidad del Rosario, Bogotá 111221, Colombia 3 GenomaCES, Universidad CES, Medellin 050021, Colombia 4 School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA; [email protected] (L.R.); [email protected] (F.V.); [email protected] (I.K.J.) 5 Applied Bioinformatics Laboratory, Atlanta, GA 30332, USA 6 PanAmerican Bioinformatics Institute, Cali, Valle del Cauca 760043, Colombia 7 School of Medicine, Universidad de Antioquia, Medellín 050010, Colombia 8 Translational Microbiology and Emerging Diseases (MICROS), School of Medicine and Health Sciences, Universidad del Rosario, Bogotá 111221, Colombia * Correspondence: [email protected] Abstract: Histoplasmosis is a systemic fungal disease caused by the pathogen Histoplasma spp. that results in significant morbidity and mortality in persons with HIV/AIDS and can also affect immuno- competent individuals. Although some PCR and antigen-detection assays have been developed, Citation: Gallo, J.E.; Torres, I.; conventional diagnosis has largely relied on culture, which can take weeks. Our aim was to provide Gómez, O.M.; Rishishwar, L.; a proof of principle for rationally designing and standardizing PCR assays based on Histoplasma- Vannberg, F.; Jordan, I.K.; McEwen, specific genomic sequences. -
October 2006 Newsletter of the Mycological Society of America
Supplement to Mycologia Vol. 57(5) October 2006 Newsletter of the Mycological Society of America — In This Issue — RCN: A Phylogeny for Kingdom Fungi (Deep Hypha)1 RCN: A Phylogeny for Kingdom Fungi By Meredith Blackwell, (Deep Hypha) . 1 Joey Spatafora, and John Taylor MSA Business . 4 “Fungi have a profound impact on global ecosystems. They modify our habitats and are essential for many ecosystem func- Mycological News . 18 tions. For example they are among the biological agents that form soil, recycle nutrients, decay wood, enhance plant growth, Mycologist’s Bookshelf . 31 and cull plants from their environment. They feed us, poison us, Mycological Classifieds . 36 parasitize us until death, and cure us. Still other fungi destroy our crops, homes, libraries, and even data CDs. For practical Mycology On-Line . 37 and intellectual reasons it is important to provide a phylogeny of fungi upon which a classification can be firmly based. A Calender of Events . 37 phylogeny is the framework for retrieving information on 1.5 million species and gives a best estimation of the manner in Sustaining Members . 39 which fungal evolution proceeded in relation to other organ- isms. A stable classification is needed both by mycologists and other user groups. The planning of a broad-scale phylogeny is — Important Dates — justified on the basis of the importance of fungi as a group, the poor current state of their knowledge, and the willingness of October 15 Deadline: united, competent researchers to attack the problem. Inoculum 57(6) “If only 80,000 of an estimated 1.5 million fungi are August 4-9, 2007: known, we must continue to discover missing diversity not only MSA Meeting at lower taxonomic levels but higher levels as well. -
Phylogeny of Chrysosporia Infecting Reptiles: Proposal of the New Family Nannizziopsiaceae and Five New Species
CORE Metadata, citation and similar papers at core.ac.uk Provided byPersoonia Diposit Digital 31, de Documents2013: 86–100 de la UAB www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X669698 Phylogeny of chrysosporia infecting reptiles: proposal of the new family Nannizziopsiaceae and five new species A.M. Stchigel1, D.A. Sutton2, J.F. Cano-Lira1, F.J. Cabañes3, L. Abarca3, K. Tintelnot4, B.L. Wickes5, D. García1, J. Guarro1 Key words Abstract We have performed a phenotypic and phylogenetic study of a set of fungi, mostly of veterinary origin, morphologically similar to the Chrysosporium asexual morph of Nannizziopsis vriesii (Onygenales, Eurotiomycetidae, animal infections Eurotiomycetes, Ascomycota). The analysis of sequences of the D1-D2 domains of the 28S rDNA, including rep- ascomycetes resentatives of the different families of the Onygenales, revealed that N. vriesii and relatives form a distinct lineage Chrysosporium within that order, which is proposed as the new family Nannizziopsiaceae. The members of this family show the mycoses particular characteristic of causing skin infections in reptiles and producing hyaline, thin- and smooth-walled, small, Nannizziopsiaceae mostly sessile 1-celled conidia and colonies with a pungent skunk-like odour. The phenotypic and multigene study Nannizziopsis results, based on ribosomal ITS region, actin and β-tubulin sequences, demonstrated that some of the fungi included Onygenales in this study were different from the known species of Nannizziopsis and Chrysosporium and are described here as reptiles new. They are N. chlamydospora, N. draconii, N. arthrosporioides, N. pluriseptata and Chrysosporium longisporum. Nannizziopsis chlamydospora is distinguished by producing chlamydospores and by its ability to grow at 5 °C.