<I>Caliciopsis Pleomorpha</I> <I> Sp. Nov.</I> (<I>Ascomycota
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The Taxonomy, Phylogeny and Impact of Mycosphaerella Species on Eucalypts in South-Western Australia
The Taxonomy, Phylogeny and Impact of Mycosphaerella species on Eucalypts in South-Western Australia By Aaron Maxwell BSc (Hons) Murdoch University Thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy School of Biological Sciences and Biotechnology Murdoch University Perth, Western Australia April 2004 Declaration I declare that the work in this thesis is of my own research, except where reference is made, and has not previously been submitted for a degree at any institution Aaron Maxwell April 2004 II Acknowledgements This work forms part of a PhD project, which is funded by an Australian Postgraduate Award (Industry) grant. Integrated Tree Cropping Pty is the industry partner involved and their financial and in kind support is gratefully received. I am indebted to my supervisors Associate Professor Bernie Dell and Dr Giles Hardy for their advice and inspiration. Also, Professor Mike Wingfield for his generosity in funding and supporting my research visit to South Africa. Dr Hardy played a great role in getting me started on this road and I cannot thank him enough for opening my eyes to the wonders of mycology and plant pathology. Professor Dell’s great wit has been a welcome addition to his wealth of knowledge. A long list of people, have helped me along the way. I thank Sarah Jackson for reviewing chapters and papers, and for extensive help with lab work and the thinking through of vexing issues. Tania Jackson for lab, field, accommodation and writing expertise. Kar-Chun Tan helped greatly with the RAPD’s research. Chris Dunne and Sarah Collins for writing advice. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
A Test of Host-Taxon, Environment, and Distance Effects on Leaf Fungal Endophytes in Metrosideros on the Island of O'ahu a Th
A TEST OF HOST-TAXON, ENVIRONMENT, AND DISTANCE EFFECTS ON LEAF FUNGAL ENDOPHYTES IN METROSIDEROS ON THE ISLAND OF O‘AHU A THESIS SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI‘I AT HILO IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN TROPICAL CONSERVATION BIOLOGY AND ENVIRONMENTAL SCIENCE DECEMBER 2019 By Gary L. Sur Thesis Committee: Dr. Rebecca Ostertag, Chairperson Dr. Jolene Sutton, Primary Advisor Dr. Scott Geib Dr. Elizabeth Stacy Acknowledgments First and foremost, I want to thank my primary advisor, Dr. Elizabeth Stacy, for her steadfast guidance, inspiration, and support throughout the course of this project. Her tireless efforts helped me overcome many seemingly insurmountable challenges, and encouraged me to become a better researcher. Additionally, I thank the members of my thesis committee Dr. Rebecca Ostertag, Dr. Jolene Sutton, and Dr. Scott Geib for their contributions in developing this project, providing lab supplies, equipment, and recommendations that were vital for this project. I thank the National Science Foundation CREST (Centers of Research Excellence in Science and Technology) grant and University of Hawai‘i at Hilo for funding this project. I also thank Doreen Koizumi for her assistance in procuring supplies, reagents, and sequencing services. Special thanks are owed to Dr. Stacy, Jennifer Johansen, and Tomoko Sakishima for collecting and storing all Metrosideros leaf samples from O‘ahu and to Anne Veillet, Renee Corpuz, and Tomoko Sakishima for their invaluable help towards completing my DNA extractions, PCRs, and library preparation. I am grateful to Audra McKinzie of ThermoFisher Scientific, and DC3 Therapeutics LLC for their Ion Torrent sequencing service. -
A Class-Wide Phylogenetic Assessment of Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 1–15. 2009 doi:10.3114/sim.2009.64.01 A class-wide phylogenetic assessment of Dothideomycetes C.L. Schoch1*, P.W. Crous2, J.Z. Groenewald2, E.W.A. Boehm3, T.I. Burgess4, J. de Gruyter2, 5, G.S. de Hoog2, L.J. Dixon6, M. Grube7, C. Gueidan2, Y. Harada8, S. Hatakeyama8, K. Hirayama8, T. Hosoya9, S.M. Huhndorf10, K.D. Hyde11, 33, E.B.G. Jones12, J. Kohlmeyer13, Å. Kruys14, Y.M. Li33, R. Lücking10, H.T. Lumbsch10, L. Marvanová15, J.S. Mbatchou10, 16, A.H. McVay17, A.N. Miller18, G.K. Mugambi10, 19, 27, L. Muggia7, M.P. Nelsen10, 20, P. Nelson21, C A. Owensby17, A.J.L. Phillips22, S. Phongpaichit23, S.B. Pointing24, V. Pujade-Renaud25, H.A. Raja26, E. Rivas Plata10, 27, B. Robbertse1, C. Ruibal28, J. Sakayaroj12, T. Sano8, L. Selbmann29, C.A. Shearer26, T. Shirouzu30, B. Slippers31, S. Suetrong12, 23, K. Tanaka8, B. Volkmann- Kohlmeyer13, M.J. Wingfield31, A.R. Wood32, J.H.C.Woudenberg2, H. Yonezawa8, Y. Zhang24, J.W. Spatafora17 1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 2CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands; 3Department of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.; 4Biological Sciences, Murdoch University, Murdoch, 6150, Australia; 5Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands; 6USDA-ARS Systematic Mycology and Microbiology -
Monilochaetes and Allied Genera of the Glomerellales, and a Reconsideration of Families in the Microascales
available online at www.studiesinmycology.org StudieS in Mycology 68: 163–191. 2011. doi:10.3114/sim.2011.68.07 Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales M. Réblová1*, W. Gams2 and K.A. Seifert3 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43 Průhonice, Czech Republic; 2Molenweg 15, 3743CK Baarn, The Netherlands; 3Biodiversity (Mycology and Botany), Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: We examined the phylogenetic relationships of two species that mimic Chaetosphaeria in teleomorph and anamorph morphologies, Chaetosphaeria tulasneorum with a Cylindrotrichum anamorph and Australiasca queenslandica with a Dischloridium anamorph. Four data sets were analysed: a) the internal transcribed spacer region including ITS1, 5.8S rDNA and ITS2 (ITS), b) nc28S (ncLSU) rDNA, c) nc18S (ncSSU) rDNA, and d) a combined data set of ncLSU-ncSSU-RPB2 (ribosomal polymerase B2). The traditional placement of Ch. tulasneorum in the Microascales based on ncLSU sequences is unsupported and Australiasca does not belong to the Chaetosphaeriaceae. Both holomorph species are nested within the Glomerellales. A new genus, Reticulascus, is introduced for Ch. tulasneorum with associated Cylindrotrichum anamorph; another species of Reticulascus and its anamorph in Cylindrotrichum are described as new. The taxonomic structure of the Glomerellales is clarified and the name is validly published. As delimited here, it includes three families, the Glomerellaceae and the newly described Australiascaceae and Reticulascaceae. Based on ITS and ncLSU rDNA sequence analyses, we confirm the synonymy of the anamorph generaDischloridium with Monilochaetes. -
Proposed Generic Names for Dothideomycetes
Naming and outline of Dothideomycetes–2014 Nalin N. Wijayawardene1, 2, Pedro W. Crous3, Paul M. Kirk4, David L. Hawksworth4, 5, 6, Dongqin Dai1, 2, Eric Boehm7, Saranyaphat Boonmee1, 2, Uwe Braun8, Putarak Chomnunti1, 2, , Melvina J. D'souza1, 2, Paul Diederich9, Asha Dissanayake1, 2, 10, Mingkhuan Doilom1, 2, Francesco Doveri11, Singang Hongsanan1, 2, E.B. Gareth Jones12, 13, Johannes Z. Groenewald3, Ruvishika Jayawardena1, 2, 10, James D. Lawrey14, Yan Mei Li15, 16, Yong Xiang Liu17, Robert Lücking18, Hugo Madrid3, Dimuthu S. Manamgoda1, 2, Jutamart Monkai1, 2, Lucia Muggia19, 20, Matthew P. Nelsen18, 21, Ka-Lai Pang22, Rungtiwa Phookamsak1, 2, Indunil Senanayake1, 2, Carol A. Shearer23, Satinee Suetrong24, Kazuaki Tanaka25, Kasun M. Thambugala1, 2, 17, Saowanee Wikee1, 2, Hai-Xia Wu15, 16, Ying Zhang26, Begoña Aguirre-Hudson5, Siti A. Alias27, André Aptroot28, Ali H. Bahkali29, Jose L. Bezerra30, Jayarama D. Bhat1, 2, 31, Ekachai Chukeatirote1, 2, Cécile Gueidan5, Kazuyuki Hirayama25, G. Sybren De Hoog3, Ji Chuan Kang32, Kerry Knudsen33, Wen Jing Li1, 2, Xinghong Li10, ZouYi Liu17, Ausana Mapook1, 2, Eric H.C. McKenzie34, Andrew N. Miller35, Peter E. Mortimer36, 37, Dhanushka Nadeeshan1, 2, Alan J.L. Phillips38, Huzefa A. Raja39, Christian Scheuer19, Felix Schumm40, Joanne E. Taylor41, Qing Tian1, 2, Saowaluck Tibpromma1, 2, Yong Wang42, Jianchu Xu3, 4, Jiye Yan10, Supalak Yacharoen1, 2, Min Zhang15, 16, Joyce Woudenberg3 and K. D. Hyde1, 2, 37, 38 1Institute of Excellence in Fungal Research and 2School of Science, Mae Fah Luang University, -
Toward a Fully Resolved Fungal Tree of Life
Annual Review of Microbiology Toward a Fully Resolved Fungal Tree of Life Timothy Y. James,1 Jason E. Stajich,2 Chris Todd Hittinger,3 and Antonis Rokas4 1Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan 48109, USA; email: [email protected] 2Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California, Riverside, California 92521, USA; email: [email protected] 3Laboratory of Genetics, DOE Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Center for Genomic Science and Innovation, J.F. Crow Institute for the Study of Evolution, University of Wisconsin–Madison, Madison, Wisconsin 53726, USA; email: [email protected] 4Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235, USA; email: [email protected] Annu. Rev. Microbiol. 2020. 74:291–313 Keywords First published as a Review in Advance on deep phylogeny, phylogenomic inference, uncultured majority, July 13, 2020 classification, systematics The Annual Review of Microbiology is online at micro.annualreviews.org Abstract https://doi.org/10.1146/annurev-micro-022020- Access provided by Vanderbilt University on 06/28/21. For personal use only. In this review, we discuss the current status and future challenges for fully 051835 Annu. Rev. Microbiol. 2020.74:291-313. Downloaded from www.annualreviews.org elucidating the fungal tree of life. In the last 15 years, advances in genomic Copyright © 2020 by Annual Reviews. technologies have revolutionized fungal systematics, ushering the field into All rights reserved the phylogenomic era. This has made the unthinkable possible, namely ac- cess to the entire genetic record of all known extant taxa. -
Logs and Chips of Eighteen Eucalypt Species from Australia
United States Department of Agriculture Pest Risk Assessment Forest Service of the Importation Into Forest Products Laboratory the United States of General Technical Report Unprocessed Logs and FPL−GTR−137 Chips of Eighteen Eucalypt Species From Australia P. (=Tryphocaria) solida, P. tricuspis; Scolecobrotus westwoodi; Abstract Tessaromma undatum; Zygocera canosa], ghost moths and carpen- The unmitigated pest risk potential for the importation of unproc- terworms [Abantiades latipennis; Aenetus eximius, A. ligniveren, essed logs and chips of 18 species of eucalypts (Eucalyptus amyg- A. paradiseus; Zelotypia stacyi; Endoxyla cinereus (=Xyleutes dalina, E. cloeziana, E. delegatensis, E. diversicolor, E. dunnii, boisduvali), Endoxyla spp. (=Xyleutes spp.)], true powderpost E. globulus, E. grandis, E. nitens, E. obliqua, E. ovata, E. pilularis, beetles (Lyctus brunneus, L. costatus, L. discedens, L. parallelocol- E. regnans, E. saligna, E. sieberi, E. viminalis, Corymbia calo- lis; Minthea rugicollis), false powderpost or auger beetles (Bo- phylla, C. citriodora, and C. maculata) from Australia into the strychopsis jesuita; Mesoxylion collaris; Sinoxylon anale; Xylion United States was assessed by estimating the likelihood and conse- cylindricus; Xylobosca bispinosa; Xylodeleis obsipa, Xylopsocus quences of introduction of representative insects and pathogens of gibbicollis; Xylothrips religiosus; Xylotillus lindi), dampwood concern. Twenty-two individual pest risk assessments were pre- termite (Porotermes adamsoni), giant termite (Mastotermes dar- pared, fifteen dealing with insects and seven with pathogens. The winiensis), drywood termites (Neotermes insularis; Kalotermes selected organisms were representative examples of insects and rufinotum, K. banksiae; Ceratokalotermes spoliator; Glyptotermes pathogens found on foliage, on the bark, in the bark, and in the tuberculatus; Bifiditermes condonensis; Cryptotermes primus, wood of eucalypts. C. -
Chocolate Spot Disease of Eucalyptus
Mycol Progress (2012) 11:61–69 DOI 10.1007/s11557-010-0728-8 ORIGINAL ARTICLE Chocolate spot disease of Eucalyptus Ratchadawan Cheewangkoon & Johannes Z. Groenewald & Kevin D. Hyde & Chaiwat To-anun & Pedro W. Crous Received: 30 July 2010 /Revised: 6 November 2010 /Accepted: 26 November 2010 /Published online: 24 December 2010 # The Author(s) 2010. This article is published with open access at Springerlink.com Abstract Chocolate Spot leaf disease of Eucalyptus is superficial on the host tissue and conidiogenous cells that associated with several Heteroconium-like species of can have loci that are either inconspicuous or proliferating hyphomycetes that resemble Heteroconium s.str. in mor- percurrently. Furthermore, conidiogenous cells can either phology. They differ, however, in their ecology, with the occur solitary on hyphae, or be sporodochial, arranged on a former being plant pathogenic, while Heteroconium s.str. is weakly developed stroma, which further distinguishes a genus of sooty moulds. Results of molecular analyses, Alysidiella from Heteroconium. inferred from DNA sequences of the large subunit (LSU) and internal transcribed spacers (ITS) region of nrDNA, Keywords Alysidiella . Aulographina . Capnodiales . delineated four Heteroconium-like species on Eucalyptus, Capnodiaceae . Heteroconium namely H. eucalypti, H. kleinziense, Alysidiella parasitica, and one isolate resembling a novel species in a clade separate from the holotype of Heteroconium, H. citharexyli. Introduction Based on molecular phylogeny, morphology and ecology, the Heteroconium-like species associated with Chocolate Over the past 20 years, several collections have been Spot disease are reclassified in the genus Alysidiella, which obtained of a foliar disease of Eucalyptus spp. that was is shown to have mycelium that is immersed in and commonly referred to as ‘Chocolate Spot’. -
Metagenome Sequence of Elaphomyces Granulatus From
bs_bs_banner Environmental Microbiology (2015) 17(8), 2952–2968 doi:10.1111/1462-2920.12840 Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome C. Alisha Quandt,1*† Annegret Kohler,2 the sequencing of sporocarp tissue, this study has Cedar N. Hesse,3 Thomas J. Sharpton,4,5 provided insights into Elaphomyces phylogenetics, Francis Martin2 and Joseph W. Spatafora1 genomics, metagenomics and the evolution of the Departments of 1Botany and Plant Pathology, ectomycorrhizal association. 4Microbiology and 5Statistics, Oregon State University, Corvallis, OR 97331, USA. Introduction 2Institut National de la Recherché Agronomique, Centre Elaphomyces Nees (Elaphomycetaceae, Eurotiales) is an de Nancy, Champenoux, France. ectomycorrhizal genus of fungi with broad host associa- 3Bioscience Division, Los Alamos National Laboratory, tions that include both angiosperms and gymnosperms Los Alamos, NM, USA. (Trappe, 1979). As the only family to include mycorrhizal taxa within class Eurotiomycetes, Elaphomycetaceae Summary represents one of the few independent origins of the mycorrhizal symbiosis in Ascomycota (Tedersoo et al., Many obligate symbiotic fungi are difficult to maintain 2010). Other ectomycorrhizal Ascomycota include several in culture, and there is a growing need for alternative genera within Pezizomycetes (e.g. Tuber, Otidea, etc.) approaches to obtaining tissue and subsequent and Cenococcum in Dothideomycetes (Tedersoo et al., genomic assemblies from such species. In this 2006; 2010). The only other genome sequence pub- study, the genome of Elaphomyces granulatus was lished from an ectomycorrhizal ascomycete is Tuber sequenced from sporocarp tissue. The genome melanosporum (Pezizales, Pezizomycetes), the black assembly remains on many contigs, but gene space perigord truffle (Martin et al., 2010). -
A Manual of Diseases of Eucalyptus in South-East Asia
A Manual of Diseases of Eucalypts in South-East Asia Kenneth M. Old Michael J. Wingfield Zi Qing Yuan A Manual of Diseases of Eucalypts in South-East Asia Kenneth M. Old CSIRO Forestry and Forest Products, Canberra, Australia Michael J. Wingfield Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa Zi Qing Yuan School of Agricultural Science, University of Tasmania, Hobart, Australia Australian Centre for International Agricultural Research (ACIAR), Canberra, Australia Center for International Forestry Research (CIFOR), Bogor, Indonesia A manual of diseases of eucalypts in South-East Asia K.M. Old, M.J. Wingfield and Z.Q. Yuan © 2003 Center for International Forestry Research Published by Center for International Forestry Research Mailing address: P.O. Box 6596 JKPWB, Jakarta 10065, Indonesia Office address: Jl. CIFOR, Situ Gede, Sindang Barang, Bogor Barat 16680, Indonesia Tel.: +62 (251) 622622; Fax: +62 (251) 622100 E-mail: [email protected] Web site: http://www.cifor.cgiar.org ISBN 064306530 With the support of CSIRO Forestry and Forest Products PO Box E4008 Kingston ACT 2604 Canberra, Australia Cover, designed by Ruth Gibbs, includes a plantation of Eucalyptus camaldulensis, with trees in foreground severely damaged by leaf and shoot blight (front cover) and a clonal nursery of the same eucalypt species (back cover). Contents Acknowledgements and dedication iv Preface v Introduction Eucalypt plantations in South-East Asia 1 Eucalyptus diseases and the scope of this manual 2 Key to diseases -
Biological and Evolutionary Diversity in the Genus Aspergillus
Sexual structures in Aspergillus -- morphology, importance and genomics David M. Geiser Department of Plant Pathology Penn State University University Park, PA Geiser mini-CV • 1989-95: PhD at University of Georgia (Bill Timberlake and Mike Arnold): Aspergillus molecular evolutionary genetics (A. nidulans) • 1995-98: postdoc at UC Berkeley (John Taylor): (A. flavus/oryzae/parasiticus, A. fumigatus, A. sydowii) • 1998-: Faculty at Penn State; Director of Fusarium Research Center -- molecular evolution of Fusarium and other fungi Chaetosartorya Petromyces Hemicarpenteles Neosartorya Fennellia Aspergillus Neocarpenteles Eurotium Warcupiella Neopetromyces Emericella Sexual structures in Aspergillus -- morphology, importance and genomics • Sexual stages associated with Aspergillus • The impact (and lack thereof) of the sexual stage on population biology • What does it mean? Characteristics of clinically important Aspergillus spp. • Ability to grow at 37C • Commonly encountered by humans • Prolific sporulators • Nothing here about sexual stages Approx. 1/3 Aspergillus species has a known sexual stage Petromyces (3) Neopetromyces (1) Neosartorya (32, 3 heterothallic) Chaetosartorya (4) Aspergillus Emericella (34, 1 heterothallic) 148 homothallic 4 heterothallic (427 names) Fennellia (3) Eurotium (69) Warcupiella (1) Hemicarpenteles (4) Neocarpenteles (1) Heterothallics rare; virtually all have a conidial stage Types of ascomata cleistothecium (no hymenium - naked passive spore dispersal) asci asci and paraphyses (hymenium) apothecium perithecium