Arabis [Boechera] Hoffmannii (Hoffmann's Rock-Cress) 5-Year
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Chromosomal Evolution and Apomixis in the Cruciferous Tribe Boechereae
fpls-11-00514 May 26, 2020 Time: 17:57 # 1 ORIGINAL RESEARCH published: 28 May 2020 doi: 10.3389/fpls.2020.00514 Chromosomal Evolution and Apomixis in the Cruciferous Tribe Boechereae Terezie Mandáková1, Petra Hloušková1, Michael D. Windham2, Thomas Mitchell-Olds2, Kaylynn Ashby3, Bo Price3, John Carman3 and Martin A. Lysak1* 1 CEITEC, Masaryk University, Brno, Czechia, 2 Department of Biology, Duke University, Durham, NC, United States, 3 Plants, Soils, and Climate Department, Utah State University, Logan, UT, United States The mustard family (Brassicaceae) comprises several dozen monophyletic clades usually ranked as tribes. The tribe Boechereae plays a prominent role in plant research due to the incidence of apomixis and its close relationship to Arabidopsis. This tribe, largely confined to western North America, harbors nine genera and c. 130 species, with >90% of species belonging to the genus Boechera. Hundreds of apomictic diploid and triploid Boechera hybrids have spurred interest in this genus, but the remaining Boechereae genomes remain virtually unstudied. Here we report on comparative Edited by: genome structure of six genera (Borodinia, Cusickiella, Phoenicaulis, Polyctenium, Steven Dodsworth, Nevada, and Sandbergia) and three Boechera species as revealed by comparative University of Bedfordshire, United Kingdom chromosome painting (CCP). All analyzed taxa shared the same seven-chromosome Reviewed by: genome structure. Comparisons with the sister Halimolobeae tribe (n = 8) showed Ana Paula Moraes, that the ancestral Boechereae genome (n = 7) was derived from an older n = 8 Universidade Federal do ABC, Brazil Aretuza Sousa Dos Santos, genome by descending dysploidy followed by the divergence of extant Boechereae Ludwig Maximilian University taxa. -
Taxa Named in Honor of Ihsan A. Al-Shehbaz
TAXA NAMED IN HONOR OF IHSAN A. AL-SHEHBAZ 1. Tribe Shehbazieae D. A. German, Turczaninowia 17(4): 22. 2014. 2. Shehbazia D. A. German, Turczaninowia 17(4): 20. 2014. 3. Shehbazia tibetica (Maxim.) D. A. German, Turczaninowia 17(4): 20. 2014. 4. Astragalus shehbazii Zarre & Podlech, Feddes Repert. 116: 70. 2005. 5. Bornmuellerantha alshehbaziana Dönmez & Mutlu, Novon 20: 265. 2010. 6. Centaurea shahbazii Ranjbar & Negaresh, Edinb. J. Bot. 71: 1. 2014. 7. Draba alshehbazii Klimeš & D. A. German, Bot. J. Linn. Soc. 158: 750. 2008. 8. Ferula shehbaziana S. A. Ahmad, Harvard Pap. Bot. 18: 99. 2013. 9. Matthiola shehbazii Ranjbar & Karami, Nordic J. Bot. doi: 10.1111/j.1756-1051.2013.00326.x, 10. Plocama alshehbazii F. O. Khass., D. Khamr., U. Khuzh. & Achilova, Stapfia 101: 25. 2014. 11. Alshehbazia Salariato & Zuloaga, Kew Bulletin …….. 2015 12. Alshehbzia hauthalii (Gilg & Muschl.) Salariato & Zuloaga 13. Ihsanalshehbazia Tahir Ali & Thines, Taxon 65: 93. 2016. 14. Ihsanalshehbazia granatensis (Boiss. & Reuter) Tahir Ali & Thines, Taxon 65. 93. 2016. 15. Aubrieta alshehbazii Dönmez, Uǧurlu & M.A.Koch, Phytotaxa 299. 104. 2017. 16. Silene shehbazii S.A.Ahmad, Novon 25: 131. 2017. PUBLICATIONS OF IHSAN A. AL-SHEHBAZ 1973 1. Al-Shehbaz, I. A. 1973. The biosystematics of the genus Thelypodium (Cruciferae). Contrib. Gray Herb. 204: 3-148. 1977 2. Al-Shehbaz, I. A. 1977. Protogyny, Cruciferae. Syst. Bot. 2: 327-333. 3. A. R. Al-Mayah & I. A. Al-Shehbaz. 1977. Chromosome numbers for some Leguminosae from Iraq. Bot. Notiser 130: 437-440. 1978 4. Al-Shehbaz, I. A. 1978. Chromosome number reports, certain Cruciferae from Iraq. -
COLLECTION SPECIES from POTENTILLA GENUS Romanian
NATURAL RESOURCES AND SUSTAINABLE DEVELOPMENT, _ 2017 COLLECTION SPECIES FROM POTENTILLA GENUS Crișan Vlad*, Dincă Lucian*, Onet Cristian**, Onet Aurelia** *National Institute for Research and Development in Forestry (INCDS) „Marin Dracea”, 13 Cloșca St., 500040, Brașov, Romania, e-mail: [email protected] **University of Oradea, Faculty of Environmental Protection, 26 Gen. Magheru St., 410048, Oradea, Romania Abstract The present paper reunites the morphological and ecological description of the main species belonging to Potentilla genus present in "Alexandru Beldie" Herbarium from Romanian National Institute for Research and Development in Forestry "Marin Drăcea" (INCDS), Bucharest. Furthermore, the paper systemize the herbarium specimens based on species, harvest year, the place from where they were harvested and the specialist that gathered them. The first part of the article shortly describes the herbarium and its specific, together with a presentation of the material and method used for elaborating this paper. As such, the material that was used is represented by the 276 plates that contain the specimens of 69 species belonging to the Potentilla genus. Besides the description of harvested Potentilla species, the article presents the European map of their harvesting locations, together with a synthetic analysis of their harvesting periods. The paper ends with a series of conclusions regarding the analysis of the Potentilla genus species and specimens present in the herbarium. Key words: herbar, plante, flowers, frunze, Potentilla. INTRODUCTION Romanian National Institute for Research and Development in Forestry "Marin Drăcea" (INCDS) from Bucharest hosts an extremely valuable collection of herbaceous plants. This herbarium is registered in "INDEX HERBARIORUM" which is a guide to the world's herbaria and their staff established since 1935. -
Diploid Apomicts of the Boechera Holboellii Complex Display Large-Scale Chromosome Substitutions and Aberrant Chromosomes
Diploid apomicts of the Boechera holboellii complex display large-scale chromosome substitutions and aberrant chromosomes Laksana Kantama*†, Timothy F. Sharbel‡, M. Eric Schranz§, Thomas Mitchell-Olds¶, Sacco de Vries*, and Hans de Jongʈ** *Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, NL-6703 HA, Wageningen, The Netherlands; ‡Apomixis Research Group, Department of Cytogenetics and Genome Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany; §Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Kruislaan 318, NL-1098 MS, Amsterdam, The Netherlands; ¶Department of Biology, Duke University, Durham, NC 27708; and ʈLaboratory of Genetics, Wageningen University, Arboretumlaan 4, NL-6703 BD, Wageningen, The Netherlands Communicated by Maarten Koornneef, Wageningen University and Research Centre, Wageningen, The Netherlands, July 15, 2007 (received for review May 20, 2007) We conducted a cytogenetic study of sexual lines of Boechera holboellii is polyphyletic. Its sequence and microsatellite analyses and seven diploid apomic- have shown that B. divaricarpa arose through hybridization (14 ؍ stricta and Boechera holboellii (2n tic accessions of their interspecific hybrid Boechera divaricarpa and between sexual B. stricta and B. holboellii or a closely related or 15). By studying chromosome morphology, species (3, 5, 6). The level of allelic variation is comparable 14 ؍ B. holboellii (2n rDNA repeats, genome painting, male meiosis, pollen morphology, between B. divaricarpa and B. holboellii, and a low number of and flow-cytometry seed screens, we revealed an unexpected species-specific alleles suggests that the hybrid originated re- plethora of chromosome forms, pairing behavior, and hybrid cently (6). Multiple evolutionary origins of triploidy in Boechera composition in all apomictic lines. -
Phylogenetic Position and Generic Limits of Arabidopsis (Brassicaceae)
PHYLOGENETIC POSITION Steve L. O'Kane, Jr.2 and Ihsan A. 3 AND GENERIC LIMITS OF Al-Shehbaz ARABIDOPSIS (BRASSICACEAE) BASED ON SEQUENCES OF NUCLEAR RIBOSOMAL DNA1 ABSTRACT The primary goals of this study were to assess the generic limits and monophyly of Arabidopsis and to investigate its relationships to related taxa in the family Brassicaceae. Sequences of the internal transcribed spacer region (ITS-1 and ITS-2) of nuclear ribosomal DNA, including 5.8S rDNA, were used in maximum parsimony analyses to construct phylogenetic trees. An attempt was made to include all species currently or recently included in Arabidopsis, as well as species suggested to be close relatives. Our ®ndings show that Arabidopsis, as traditionally recognized, is polyphyletic. The genus, as recircumscribed based on our results, (1) now includes species previously placed in Cardaminopsis and Hylandra as well as three species of Arabis and (2) excludes species now placed in Crucihimalaya, Beringia, Olimar- abidopsis, Pseudoarabidopsis, and Ianhedgea. Key words: Arabidopsis, Arabis, Beringia, Brassicaceae, Crucihimalaya, ITS phylogeny, Olimarabidopsis, Pseudoar- abidopsis. Arabidopsis thaliana (L.) Heynh. was ®rst rec- netic studies and has played a major role in un- ommended as a model plant for experimental ge- derstanding the various biological processes in netics over a half century ago (Laibach, 1943). In higher plants (see references in Somerville & Mey- recent years, many biologists worldwide have fo- erowitz, 2002). The intraspeci®c phylogeny of A. cused their research on this plant. As indicated by thaliana has been examined by Vander Zwan et al. Patrusky (1991), the widespread acceptance of A. (2000). Despite the acceptance of A. -
Biogeography and Diversification of Brassicales
Molecular Phylogenetics and Evolution 99 (2016) 204–224 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Biogeography and diversification of Brassicales: A 103 million year tale ⇑ Warren M. Cardinal-McTeague a,1, Kenneth J. Sytsma b, Jocelyn C. Hall a, a Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada b Department of Botany, University of Wisconsin, Madison, WI 53706, USA article info abstract Article history: Brassicales is a diverse order perhaps most famous because it houses Brassicaceae and, its premier mem- Received 22 July 2015 ber, Arabidopsis thaliana. This widely distributed and species-rich lineage has been overlooked as a Revised 24 February 2016 promising system to investigate patterns of disjunct distributions and diversification rates. We analyzed Accepted 25 February 2016 plastid and mitochondrial sequence data from five gene regions (>8000 bp) across 151 taxa to: (1) Available online 15 March 2016 produce a chronogram for major lineages in Brassicales, including Brassicaceae and Arabidopsis, based on greater taxon sampling across the order and previously overlooked fossil evidence, (2) examine Keywords: biogeographical ancestral range estimations and disjunct distributions in BioGeoBEARS, and (3) determine Arabidopsis thaliana where shifts in species diversification occur using BAMM. The evolution and radiation of the Brassicales BAMM BEAST began 103 Mya and was linked to a series of inter-continental vicariant, long-distance dispersal, and land BioGeoBEARS bridge migration events. North America appears to be a significant area for early stem lineages in the Brassicaceae order. Shifts to Australia then African are evident at nodes near the core Brassicales, which diverged Cleomaceae 68.5 Mya (HPD = 75.6–62.0). -
Expression Profiling and Local Adaptation of Boechera Holboellii
CORE Metadata, citation and similar papers at core.ac.uk Provided by DigitalCommons@CalPoly µBlackwellExpression Publishing Ltd profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient CHARLES A. KNIGHT HEIKO VOGEL JUERGEN KROYMANN ALICE SHUMATE HANNEKE WITSENBOER and THOMAS MITCHELL-OLDS Abstract We studied the physiological basis of local adaptation to drought in Boechera holboellii, a perennial relative of Arabidopsis thaliana, and used cDNA–AFLPs to identify candidate genes showing differential expression in these populations. We compared two populations of B. holboellii from contrasting water environments in a reciprocal transplant experiment, as well as in a laboratory dry-down experiment. We continuously measured the water con tent of soils using time domain reflectometery (TDR). We compared populations for their water use efficiency (WUE), root/shoot ratios (R:S) and leaf mass per unit area (LMA) in the field and in the laboratory, and identified candidate genes that (i) responded plastically to water stress and (ii) were differentially expressed between the two populations. Genotypes from the drier site had higher WUE, which was attributable to a large reduction in transpi rational water loss. The xeric-adapted population also had increased investment in root bio mass and greater leaf mass per unit area. Reciprocal transplants in the field had significantly greater survival in their native habitat. In total, 450 cDNA-AFLP fragments showed significant changes between drought and control treatments. Furthermore, some genes showed genotype (population)-specific patterns of up- or down-regulation in response to drought. Three hundred cDNA-AFLP bands were sequenced leading to the identification of cDNAs coding for proteins involved in signal transduction, transcriptional regulation, redox regulation, oxidative stress and pathways involved in stress adaptation. -
Index of Botanist Names Associated with the Flora of Putnam Park Frederick Warren King
Index of Botanist Names Associated with the Flora of Putnam Park Frederick Warren King Standard abbreviation form refers to how the botanist’s name may appear in the citation of a species. For a number of the botanists who appear below, they are the authorities or co- authorities for the names of many additional species. The focus in this list is on flowers that appear in Putnam Park. Andrews, Henry Cranke (c. 1759 – 1830). English botanist, botanical artist, and engraver. He is the authority for Scilla siberica, Siberian Squill. Standard abbreviation form: Andrews Aiton, William (1731–1793). He was a Scottish botanist, appointed director of Royal Botanic Gardens, Kew in 1759. He is the authority for Solidago nemoralis, Vaccinium angustifolium, Viola pubescens, and Viola sagittate. He is the former authority for Actaea rubra and Clintonia borealis. Standard abbreviation form: Aiton Aiton, William Townsend (1766 – 1849). English botanist, son of William Aiton. He is the authority for Barbarea vulgaris, Winter Cress. Standard abbreviation form: W.T. Aiton Al-Shehbaz, Ihsan Ali (b. 1939). Iraqi born American botanist, Senior Curator at the Missouri Botanical Garden. Co-authority for Arabidopsis lyrate, Lyre-leaved Rock Cress and Boechera grahamii, Spreading-pod Rock Cress, and authority for Boechera laevigata, Smooth Rock Cress. Standard abbreviation form: Al-Shehbaz Avé-Lallemant, Julius Léopold Eduard (1803 – 1867). German botanist, co-authority for Thalictrum dasycarpum, Tall Meadow Rue. The genus Lallemantia is named in his honor. Standard abbreviation form: Avé-Lall. Barnhart, John Hendley (1871 – 1949). Was an American botanist and non-practicing MD. He is the authority for Ratibida pinnata. -
Arabis Georgiana)
Species Status Assessment Report for the Georgia rockcress (Arabis georgiana) Version 1.0 Photo by Michele Elmore, U.S. Fish and Wildlife Service January 2021 U.S. Fish and Wildlife Service South Atlantic-Gulf Region Atlanta, GA ACKNOWLEDGEMENTS This document was prepared by the U.S. Fish and Wildlife Service’s Georgia Rockcress Species Status Assessment Core Team: Lindsay Dombroskie (Texas A&M Natural Resources Institute), Michele Elmore (U.S. Fish and Wildlife Service, Service), Stephanie DeMay (Texas A&M Natural Resources Institute), and Drew Becker (Service). We would also like to recognize and thank the following individuals who served on the expert team for this SSA and provided substantive information and/or insights, valuable input into the analysis, and/or reviews of a draft of this document: Alfred Schotz (Alabama Natural Heritage Program), Henning von Schmeling (Chattahoochee Nature Center), Jimmy Rickard (US Forest Service), Malcolm Hodges (The Nature Conservancy, Georgia Chapter), and Mincy Moffett (Georgia Department of Natural Resources, Wildlife Conservation Section). Further peer review was provided by James Allison (Independent Botanist), Julie Ballenger (Columbus State University), Alicia Garcia (U.S. Air Force), and Brian Keener (University of West Alabama). We appreciate their input and comments, which resulted in a more robust status assessment and final report. Suggested reference: U.S. Fish and Wildlife Service. 2021. Species status assessment report for the Georgia rockcress (Arabis georgiana), Version 1.0. January 2021. Atlanta, GA. 125 pp. SSA Report – Georgia Rockcress ii January 2021 VERSION UPDATES SSA Report – Georgia Rockcress iii January 2021 EXECUTIVE SUMMARY Arabis georgiana (Georgia rockcress) is a perennial plant of the mustard family (Brassicaceae) endemic to Alabama and Georgia. -
Dissertation the Potential for Adaptation in the Model
DISSERTATION THE POTENTIAL FOR ADAPTATION IN THE MODEL PLANT, ARABIDOPSIS, AND ITS CLOSE RELATIVE, BOECHERA Submitted by John Thomson Lovell Graduate Degree Program in Ecology In partial fulfillment of the requirements For the Degree of Doctor of Philosophy Colorado State University Fort Collins, Colorado Spring 2014 Doctoral Committee: Advisor: John K. McKay Cameron K. Ghalambor William L. Bauerle Amy L. Angert Copyright by John Thomson Lovell 2014 All Rights Reserved ABSTRACT THE POTENTIAL FOR ADAPTATION IN THE MODEL PLANT, ARABIDOPSIS, AND ITS CLOSE RELATIVE, BOECHERA Populations of a species are found across diverse environments. Frequently, evolutionary responses to varying natural selection pressures across environments cause adaptive differentiation among populations. For plants with limited dispersal capability, adaptation is the primary way populations can persist through changing environments and climates. Therefore, factors that constrain adaptation can directly affect the conservation status and future distributions of species and populations. Contemporary adaptations, via either selection on standing genetic variation or new beneficial mutations that sweep to fixation, have been observed across many taxonomic groups. However, these events of fast, streamlined adaptive evolution may be rare. Instead, adaptation is often constrained by both ecological and genetic forces. Determining the mechanisms and ecological manifestations of adaptive constraint remains a major challenge for evolutionary biologists, conservation biologists -
Karyotype Evolution in Apomictic Boechera and the Origin of the Aberrant Chromosomes
The Plant Journal (2015) 82, 785–793 doi: 10.1111/tpj.12849 Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes Terezie Mandakov a1, M. Eric Schranz2, Timothy F. Sharbel3, Hans de Jong4 and Martin A. Lysak1,* 1CEITEC – Central European Institute of Technology, Masaryk University, Brno, CZ-62500 Czech Republic, 2Plant Systematics Group, Wageningen University (WU), Droevendaalsesteeg 1, Wageningen, 6708 PB The Netherlands, 3Apomixis Research Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, D-06466 Germany, and 4Laboratory of Genetics, Wageningen UR PSG, P.O. Box 16, Wageningen, 6700 AA The Netherlands Received 17 February 2015; revised 24 March 2015; accepted 1 April 2015; published online 10 April 2015. *For correspondence (e-mail [email protected]). SUMMARY Chromosome rearrangements may result in both decrease and increase of chromosome numbers. Here we have used comparative chromosome painting (CCP) to reconstruct the pathways of descending and ascend- ing dysploidy in the genus Boechera (tribe Boechereae, Brassicaceae). We describe the origin and structure of three Boechera genomes and establish the origin of the previously described aberrant Het and Del chro- mosomes found in Boechera apomicts with euploid (2n = 14) and aneuploid (2n = 15) chromosome number. CCP analysis allowed us to reconstruct the origin of seven chromosomes in sexual B. stricta and apomictic B. divaricarpa from the ancestral karyotype (n = 8) of Brassicaceae lineage I. Whereas three chromosomes (BS4, BS6, and BS7) retained their ancestral structure, five chromosomes were reshuffled by reciprocal translocations to form chromosomes BS1-BS3 and BS5. The reduction of the chromosome number (from x = 8tox= 7) was accomplished through the inactivation of a paleocentromere on chromosome BS5. -
Draba Smithii Gilg Ex OE Schulz
Draba smithii Gilg ex O.E. Schulz (Smith’s draba): A Technical Conservation Assessment Prepared for the USDA Forest Service, Rocky Mountain Region, Species Conservation Project February 3, 2004 Juanita A. R. Ladyman, Ph.D. JnJ Associates 6760 S. Kit Carson Circle East Centennial, CO 80122 Peer Review Administered by Center for Plant Conservation Ladyman, J.A.R. (2004, February 3). Draba smithii Gilg ex O.E. Schulz (Smith’s draba): a technical conservation assessment. [Online]. USDA Forest Service, Rocky Mountain Region. Available: http://www.fs.fed.us/r2/ projects/scp/assessments/drabasmithii.pdf [date of access]. ACKNOWLEDGEMENTS The time spent and help given by all the people and institutions mentioned in the References section are gratefully acknowledged. I would also like to thank the Colorado Natural Heritage Program, in particular Susan Spackman and David Anderson, and the Colorado Natural Areas Program, in particular Ron West, for their generosity in making their files and records available. I also appreciate access to the files and assistance given to me by Andrew Kratz, Region 2 Forest Service, and Chuck Davis, U.S. Fish and Wildlife Service. I also very much appreciate the documents sent to me by Michael Windham and Ann Kelsey of the University of Utah, Tim Hogan and Nan Letterer of the University of Colorado, and Ulrike Starck of the Botanischer Garten und Botanisches Museum Berlin-Dahlem. The thoughtful reviews and constructive comments of Beth Burkhart and two other unnamed reviewers are also much appreciated. AUTHOR’S BIOGRAPHY Juanita A. R. Ladyman received her B.Sc. degree (with First-class honors) in Biochemistry from London University, England.