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Modelling the Affinity Maturation of B Lymphocytes in the Germinal Centre
Modelling the Affinity Maturation of B Lymphocytes in the Germinal Centre By ADAM THOMAS REYNOLDS A thesis submitted to The University of Birmingham for the degree of MASTER OF PHILOSOPHY School of Biosciences The University of Birmingham June 2010 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. To my Mum and Dad Acknowledgments I would like to thank all the people who have helped me directly and indirectly during this research project and helped me make this a memorable experience. I would like to thank Francesco Falciani, Kai Tollener, Mike Salmon, Micheal Hermann and Dov Stekel for technical support and guidance. I would also like to thank the BBSRC for providing funding for this thesis and thank Illogic for providing a licence to use the Rhapsody tool. I would also like to thank Antony Pemberton for help and support in the use of the Birmingham Biosciences High Performance Computer Cluster to perform the many computer simulations and to thank Ruth Harrison and the student support services who where invaluable in providing support and help with this thesis. -
Does Recycling in Germinal Centers Exist?
Does Recycling in Germinal Centers Exist? Michael Meyer-Hermann Institut f¨ur Theoretische Physik, TU Dresden, D-01062 Dresden, Germany E-Mail: [email protected] Abstract: A general criterion is formulated in order to decide if recycling of B-cells exists in GC reactions. The criterion is independent of the selection and affinity maturation process and based solely on total centroblast population arguments. An experimental test is proposed to verify whether the criterion is fulfilled. arXiv:physics/0102062v2 [physics.bio-ph] 6 Mar 2002 1 1 Introduction The affinity maturation process in germinal center (GC) reactions has been well charac- terized in the last decade. Despite a lot of progress concerning the morphology of GCs and the stages of the selection process, a fundamental question remains unsolved: Does recycling exist? Recycling means a back differentiation of antibody presenting centrocytes (which undergo the selection process and interact with antigen fragments or T-cells) to centroblasts (which do not present antibodies and therefore do not interact with antigen fragments but proliferate and mutate). The existence of recycling in the GC has important consequences for the structure of the affinity maturation process in GC reactions. The centroblasts proliferate and mutate with high rates in the environment of follicular dendritic cells. During the GC reaction they differentiate to antibody presenting centrocytes which may then be selected by inter- action with antigen fragments and T-cells. If the positively selected centrocytes recycle to (proliferating and mutating) centroblasts the antibody-optimization process in GCs may be compatible with random mutations of the centroblasts. -
Lymph Node Cytology
Lymph node cytopathology : A practical approach to lymphoproliferative disorders • Koray Ceyhan, M.D • Department of Pathology • Faculty of Medicine • Ankara University • Ankara, Turkey Diagnostic use of FNA in lymph node pathologies • Well-established : • - metastatic malignancy, • - lymphoma recurrences • -some reactive or inflammatory disorders: Tuberculosis,sarcoidosis • Diagnostic sensitivity/accuracy : usually above 95% • Controversial: • primary lymphoma diagnosis • Diagnostic sensitivity varies from 12% to 96% Academic institutions: high level diagnostic accuracy Community practise the accuracy rate significantly low Multiparameter approach is critical for definitive lymphoma diagnosis • Cytomorphologic features alone are not sufficient for the diagnosis of primary lymphoma • Immunophenotyping with flow cytometry and/or immunocytochemistry is mandatory • In selected cases molecular/cytogenetic analyses are required for definitive lymphoma classification Lymph node pathologies • 1-Reactive lymphoid hyperplasia/inflammatory disorders • 2-Lymphoid malignancies • 3-Metastatic tumors 1 3 2 Common problems in lymph node cytology • Reactive lymphoid hyperplasia vs lymphoma • Primary lymphoma diagnosis(lymphoma subtyping) • Predicting primary site of metastatic tumor • Nonlymphoid tumors mimicking lymphoid malignancies • Correct diagnosis of specific benign lymphoid lesions Problem 1: Reactive vs lymphoma Case 19- years-old boy Multiple bilateral cervical LAPs for 4 weeks FNA from the largest cervical lymph node measuring 15X13 mm No -
CD27 CD70 Is Downregulated by Interaction With
CD70 Is Downregulated by Interaction with CD27 Mirela Kuka, Ivana Munitic, Maria Letizia Giardino Torchia and Jonathan D. Ashwell This information is current as of September 25, 2021. J Immunol 2013; 191:2282-2289; Prepublished online 2 August 2013; doi: 10.4049/jimmunol.1300868 http://www.jimmunol.org/content/191/5/2282 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2013/08/06/jimmunol.130086 Material 8.DC1 References This article cites 35 articles, 19 of which you can access for free at: http://www.jimmunol.org/ http://www.jimmunol.org/content/191/5/2282.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on September 25, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology CD70 Is Downregulated by Interaction with CD27 Mirela Kuka,1,2 Ivana Munitic,1,3 Maria Letizia Giardino Torchia, and Jonathan D. Ashwell Engagement of the receptor CD27 by CD70 affects the magnitude and quality of T cell responses in a variety of infection models, and exaggerated signaling via this pathway results in enhanced immune responses and autoimmunity. -
A Mathematical Model for the Germinal Center Morphology and Affinity
A mathematical model for the germinal center morphology and affinity maturation Michael Meyer-Hermann Institut f¨ur Theoretische Physik, TU Dresden, D-01062 Dresden, Germany E-Mail: [email protected] Abstract: During germinal center reactions the appearance of two specific zones is ob- served: the dark and the light zone. Up to now, the origin and function of these zones are poorly understood. In the framework of a stochastic and discrete model several possi- ble pathways of zone development during germinal center reactions are investigated. The importance of the zones in the germinal center for affinity maturation, i.e. the process of antibody optimization is discussed. arXiv:physics/0203021v1 [physics.bio-ph] 7 Mar 2002 1 1 Introduction Germinal centers (GC) are an important part of the humoral immune response. They develop after the activation of B-cells by antigens. Such activated B-cells migrate into the follicular system where they begin a monoclonal expansion in the environment of follicular dendritic cells (FDC). This phase of pure centroblast multiplication is followed by a phase of intense hypermutation and proliferation which leads to a larger repertoire of different centroblast types. This seems to be the basis of the affinity maturation process, i.e. the optimization process of the antibodies with respect to a given antigen during germinal center reactions. Antigen fragments are presented on the surface of the FDCs which enables antibody presenting cells to interact with them. It is widely believed that centroblasts do not present antibodies (Han et al., 1997). Accordingly, the selection process must begin after the differentiation of centroblasts to centrocytes (the initiation of this differentiation process is still unclear) which do neither proliferate nor mutate but which present antibodies. -
Uva-DARE (Digital Academic Repository)
UvA-DARE (Digital Academic Repository) Contributions of CD27 and relatives to the specific immune response Hendriks, J.A. Publication date 2004 Link to publication Citation for published version (APA): Hendriks, J. A. (2004). Contributions of CD27 and relatives to the specific immune response. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:24 Sep 2021 Chapter 5 CD27 is acquired by primed B cells at the centroblast stage and promotes germinal center formation. Yanling Xiao, Jenny Hendriks, Petra Langerak, Heinz Jacobs and Jannie Borst The Journal of Immunology 2004 172: 7432-7441 67 68 CD27 Is Acquired by Primed B Cells at the Centroblast Stage and Promotes Germinal Center Formation1 Yanling Xiao, Jenny Hendriks, Petra Langerak, Heinz Jacobs, and Jannie Borst2 Studies on human B cells have featured CD27 as a marker and mediator of the B cell response. -
An Analysis of Myeloma Plasma Cell Phenotype Using Antibodies Defined at the Iird International Workshop on Human Leucocyte Differentiation Antigens
Clin. exp. Immunol. (1988) 72, 351-356 An analysis of myeloma plasma cell phenotype using antibodies defined at the IIrd international workshop on human leucocyte differentiation antigens N. JACKSON, N.R. LING,* JENNIFER BALL, ELAINE BROMIDGE, P.D. NATHAN* & I.M. FRANKLIN Departments of Haematology and *Immunology, The Medical School, Birmingham (Acceptedfor publication 12 January 1988) SUMMARY Fresh bone marrow from 43 cases of myeloma and three cases of plasma cell leukaemia has been phenotyped both by indirect immune-rosetting and, on fixed cytospin preparations, by indirect immunofluorescence. Both clustered and unclustered B cell associated antibodies from the IIrd International Workshop on Human Leucocyte Differentiation Antigens were used. The results confirm the lack of many pan-B antigens on the surface of myeloma plasma cells, i.e. CD19-23, 37, 39, w40. Strong surface reactivity is seen with CD38 antibodies and with one CD24 antibody (HB8). Weak reactions are sometimes obtained with CD9, 10 and 45R. On cytospin preparations CD37, 39 and w40 are sometimes weakly positive, and anti-rough endoplasmic reticulum antibodies are always strongly positive. Specific and surface-reacting antiplasma cell antibodies are still lacking. Keywords myeloma phenotype antibody cluster INTRODUCTION antibodies from CD24 (HB8 and VIB-E3). Before and after the IIrd workshop, we carried out a phenotypic analysis of fresh Multiple myeloma (MM) is a neoplastic disorder of the B cell MM bone marrow cells using both clustered and unclustered lineage. It is characterized by an excess ofneoplastic plasma cells monoclonal antibodies (MoAb) supplied for the workshop, in the bone marrow, although the nature of the clonogenic cell including one from each ofthe new and the previously defined B remains uncertain. -
Activation-Induced Cytidine Deaminase (AID)- Dependent Somatic Hypermutation Requires a Splice Isoform of the Serine/Arginine-Rich (SR) Protein SRSF1
Activation-induced cytidine deaminase (AID)- dependent somatic hypermutation requires a splice isoform of the serine/arginine-rich (SR) protein SRSF1 Yuichi Kanehiroa,1,2, Kagefumi Todoa,1,3, Misaki Negishia, Junji Fukuokaa, Wenjian Ganb, Takuya Hikasaa, Yoshiaki Kagaa, Masayuki Takemotoa, Masaki Magaria, Xialu Lib, James L. Manleyc,4, Hitoshi Ohmoria,4, and Naoki Kanayamaa,4 aDepartment of Bioscience and Biotechnology, Okayama University Graduate School of Natural Science and Technology, Tsushima-Naka, Kita-Ku, Okayama 700-8530, Japan; bNational Institute of Biological Sciences, Beijing 102206, People’s Republic of China; and cDepartment of Biological Science, Columbia University, New York, NY 10027 Contributed by James L. Manley, December 12, 2011 (sent for review October 9, 2011) Somatic hypermutation (SHM) of Ig variable region (IgV) genes DNAs harboring SHM hotspot motifs, thus enabling AID-me- requires both IgV transcription and the enzyme activation-induced diated deamination (8, 23–25). In addition, it has recently been cytidine deaminase (AID). Identification of a cofactor responsible reported that depletion of the THO-TREX complex, which for the fact that IgV genes are much more sensitive to AID-induced functions as the interface between transcription and mRNA ex- mutagenesis than other genes is a key question in immunology. port, enhances mutation in AID-expressing yeast cells (26). Here, we describe an essential role for a splice isoform of the pro- However, cofactors that are essential for generating and stabi- lizing ssDNA bubbles in the IgV genes in vivo are not well de- totypical serine/arginine-rich (SR) protein SRSF1, termed SRSF1-3, fi in AID-induced SHM in a DT40 chicken B-cell line. -
Allergy and Immunology Review Corner: Chapter 9 of Janeway’S Immunobiology 8Th Edition by Kenneth Murphy
Allergy and Immunology Review Corner: Chapter 9 of Janeway’s Immunobiology 8th Edition by Kenneth Murphy. Chapter 9 (pages 335-381): T Cell-Mediated Immunity Prepared by Amanda Jagdis, MD, University of Toronto and Monica Bhagat, MD, University of Pennsylvania 1. What is the correct sequence of lymphocyte entry into lymph nodes? A. Diapedesis; entry into the high endothelial venule; binding of L-selectin to GlyCAM-1; binding of LFA-1 to ICAM-1 B. Entry into the high endothelial venule; diapedesis; binding of LFA-1 to ICAM-1; binding of L-selectin to Gly-CAM-1 C. Entry into the high endothelial venule; binding of LFA-1 to ICAM-1; binding of L-selectin to Gly-CAM-1; diapedesis D. Entry into the high endothelial venule; binding of L-selectin to Gly-CAM-1; binding of LFA-1 to ICAM-1; diapedesis 2. What are the costimulatory molecules expressed by antigen presenting cells (APC’s) that are required for activation (second signal) of naive T cells? A. MHC2 B. B7.1/B7.2 C. IL-12 D. CD28 3. Which of the following binds B7 and results in inhibition? A. CTLA-4 B. CD28 C. CD70 D. ICOS 4. What cytokines are produced by TH1 cells? A. A. IL-4, IL-5 B. IL-6, IL-17 C. IL-2 and IFNγ D. IL-10, TGF-B 5. Which of the following transcription factors is involved in development of Treg cells? A. FoxP3 B. GATA3 C. Tbet D. Bcl6 6. In the recirculation of T cells, which of the following lymphoid organs does not utilize efferent lymphatics to exit from the organ? A. -
Uva-DARE (Digital Academic Repository)
UvA-DARE (Digital Academic Repository) Molecular basis of CD4+ T cell help for the cytotoxic T cell response Ahrends, T.J. Publication date 2018 Document Version Other version License Other Link to publication Citation for published version (APA): Ahrends, T. J. (2018). Molecular basis of CD4+ T cell help for the cytotoxic T cell response. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:08 Oct 2021 CURRICULUM VITAE LIST OF PUBLICATIONS & WORD OF THANKS ADDENDUM CURRICULUM VITAE Tomasz Ahrends was born on December 30th, 1988 in Gdańsk (Poland). In 2010 he obtained Bachelor’s degree in Biotechnology at the Intercollegiate Faculty of Biotechnology of University of Gdańsk and Medical University of Gdańsk. Subsequently, he continued his education with a Master’s degree in Biotechnology, which he fnished in 2012. -
B Cells Centrocytes Within Human Germinal Center Discriminates
CXCR4 Expression Functionally Discriminates Centroblasts versus Centrocytes within Human Germinal Center B Cells This information is current as of September 28, 2021. Gersende Caron, Simon Le Gallou, Thierry Lamy, Karin Tarte and Thierry Fest J Immunol 2009; 182:7595-7602; ; doi: 10.4049/jimmunol.0804272 http://www.jimmunol.org/content/182/12/7595 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2009/06/02/182.12.7595.DC1 Material http://www.jimmunol.org/ References This article cites 27 articles, 12 of which you can access for free at: http://www.jimmunol.org/content/182/12/7595.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 28, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2009 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology CXCR4 Expression Functionally Discriminates Centroblasts versus Centrocytes within Human Germinal Center B Cells1 Gersende Caron,2*† Simon Le Gallou,2* Thierry Lamy,*‡ Karin Tarte,*† and Thierry Fest3*† The human germinal center is a highly dynamic structure where B cells conduct their terminal differentiation and traffic following chemokine gradients. -
PDF Hosted at the Radboud Repository of the Radboud University Nijmegen
PDF hosted at the Radboud Repository of the Radboud University Nijmegen The following full text is a publisher's version. For additional information about this publication click this link. http://hdl.handle.net/2066/27226 Please be advised that this information was generated on 2021-09-26 and may be subject to change. 1142 G. D. Keizer, J. Borst, C. G. Figdor et al Eur. J. Immunol. 1985.15: 1142-1147 Gerrit D. Keizer0, Jannie Borst°, Biochemical and functional characteristics of the Carl G. Figdor0 , Hergen Spits0 , Frank MiedemaA, Cox TerhorstD human leukocyte membrane antigen family LFA-1, and Jan E. De Vries0 Mo-1 and pl50,95* Division of Immunology, The Netherlands Cancer Institute (Antoni The human leukocyte function-associated (LFA-1) antigen, the monocyte differentia van Leeuwenhoek Huis)0 , Amsterdam, tion antigen Mo-1 which is characterized as the C3bi receptor and the glycoprotein Central Laboratory of the Netherlands p i50,95 are characterized biochemically. Immunoprecipitations carried out with 6 Red Cross Blood Transfusion ServiceA, different monoclonal antibodies (mAb) against LFA-1 indicated that four mAb (SPV- Amsterdam and Dana-Farber Cancer Ll, SPV-L5, SPV-L7 and SPV-L11) were directed against the a chain, whereas mAb Institute0, Boston CLB54 and MHM-23 were found to react with the common |3 chain of LFA-1, Mo-1 and p 150,95. LFA-1 and Mo-1 expressed on KG-1 cells or lymphocytes, monocytes and granulocytes from one donor were homogeneous. Interestingly the a chain of pl50,95 showed heterogeneity. The molecular weight of the a chain expressed on monocytes was consistently higher than that of the a chain on granulocytes.